Wall clock time and date at job start Tue Mar 31 2020 01:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48497 * 109.46851 * 272.65712 * 3 2 1 5 5 H 1.48504 * 109.47160 * 32.65494 * 3 2 1 6 6 H 1.48495 * 109.47296 * 152.65632 * 3 2 1 7 7 C 1.39942 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99636 * 347.81896 * 7 2 1 9 9 C 1.41406 * 119.99692 * 167.82133 * 7 2 1 10 10 C 1.40777 * 120.20592 * 149.03699 * 9 7 2 11 11 C 1.37642 * 119.88164 * 180.27036 * 10 9 7 12 12 C 1.38534 * 120.32099 * 359.48230 * 11 10 9 13 13 C 1.39243 * 120.42760 * 0.27272 * 12 11 10 14 14 N 1.39958 * 119.94766 * 180.02562 * 13 12 11 15 15 C 1.34776 * 120.00176 * 144.55257 * 14 13 12 16 16 O 1.21589 * 119.99954 * 4.69635 * 15 14 13 17 17 N 1.34779 * 120.00033 * 184.68712 * 15 14 13 18 18 O 1.41595 * 119.99911 * 180.02562 * 17 15 14 19 19 C 1.42902 * 113.99794 * 180.02562 * 18 17 15 20 20 C 1.50705 * 109.46879 * 180.02562 * 19 18 17 21 21 N 1.34779 * 119.99814 * 179.97438 * 20 19 18 22 22 O 1.21281 * 120.00083 * 359.97438 * 20 19 18 23 23 C 1.38270 * 120.10761 * 359.97438 * 13 12 11 24 24 H 0.97003 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.05910 * 0.02893 * 10 9 7 26 26 H 1.08003 * 119.84158 * 179.74740 * 11 10 9 27 27 H 1.08004 * 119.78619 * 180.25254 * 12 11 10 28 28 H 0.97000 * 120.00037 * 324.56013 * 14 13 12 29 29 H 0.97006 * 119.99547 * 0.02562 * 17 15 14 30 30 H 1.09000 * 109.47348 * 299.99390 * 19 18 17 31 31 H 1.08996 * 109.47142 * 59.99898 * 19 18 17 32 32 H 0.97000 * 119.99572 * 359.97438 * 21 20 19 33 33 H 0.96999 * 119.99815 * 179.97438 * 21 20 19 34 34 H 1.08004 * 120.16083 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4336 2.0787 -1.3986 5 1 1.4690 2.6358 0.7555 6 1 3.5668 1.4245 0.6431 7 6 2.0079 -1.2120 0.0005 8 1 1.4861 -2.1365 0.1983 9 6 3.3981 -1.2258 -0.2578 10 6 4.2190 -2.2038 0.3351 11 6 5.5722 -2.2077 0.0834 12 6 6.1295 -1.2600 -0.7594 13 6 5.3291 -0.2898 -1.3569 14 7 5.9027 0.6625 -2.2072 15 6 5.2210 1.1027 -3.2833 16 8 4.0761 0.7378 -3.4687 17 7 5.8084 1.9475 -4.1538 18 8 5.0920 2.4104 -5.2840 19 6 5.8364 3.2985 -6.1203 20 6 4.9814 3.7265 -7.2852 21 7 5.4780 4.5705 -8.2113 22 8 3.8466 3.3115 -7.3893 23 6 3.9684 -0.2664 -1.1124 24 1 -0.4850 0.8401 0.0004 25 1 3.7883 -2.9473 0.9894 26 1 6.2019 -2.9558 0.5419 27 1 7.1918 -1.2736 -0.9541 28 1 6.7909 1.0056 -2.0221 29 1 6.7219 2.2385 -4.0059 30 1 6.1324 4.1762 -5.5456 31 1 6.7263 2.7891 -6.4899 32 1 6.3855 4.9027 -8.1277 33 1 4.9278 4.8457 -8.9613 34 1 3.3467 0.4855 -1.5757 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001562816984.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:50 Heat of formation + Delta-G solvation = -22.187383 kcal Electronic energy + Delta-G solvation = -21008.908568 eV Core-core repulsion = 17523.643193 eV Total energy + Delta-G solvation = -3485.265375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09440 -39.74435 -37.81818 -36.81119 -34.35584 -34.15567 -33.24094 -32.15226 -30.28061 -28.60265 -27.54010 -25.11345 -22.38546 -21.50341 -21.04923 -20.11472 -18.74081 -18.39658 -17.70539 -17.29962 -16.54991 -16.50845 -15.92855 -15.28402 -14.96768 -14.60753 -14.39009 -14.04337 -13.97884 -13.40028 -13.06224 -12.84020 -12.52181 -12.00263 -11.62445 -11.38055 -10.76319 -10.65789 -10.59370 -10.41648 -10.16987 -10.00028 -9.91793 -9.61873 -9.14472 -8.97036 -8.87480 -7.53346 -7.13829 -6.78689 -4.37957 1.36103 2.16749 2.55219 2.75982 3.06653 3.29312 3.34594 3.41923 3.57844 4.06266 4.15256 4.24967 4.50722 4.57886 4.60590 4.63092 5.52000 6.01103 6.21822 6.28786 6.40285 6.51704 6.65554 6.75023 6.82217 6.83198 7.02731 7.26801 7.54969 7.60638 7.71468 7.79980 7.91670 8.15285 8.27293 8.45999 8.72714 8.89878 8.94521 10.23570 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.004803 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.258575 B = 5828.276374 C = 6842.858760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.086 3.914 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.246 1.246 7 C -0.442 4.442 8 H 0.092 0.908 9 C 0.101 3.899 10 C -0.218 4.218 11 C -0.071 4.071 12 C -0.264 4.264 13 C 0.184 3.816 14 N -0.673 5.673 15 C 0.710 3.290 16 O -0.531 6.531 17 N -0.619 5.619 18 O -0.097 6.097 19 C 0.009 3.991 20 C 0.525 3.475 21 N -0.851 5.851 22 O -0.508 6.508 23 C -0.228 4.228 24 H 0.284 0.716 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.398 0.602 29 H 0.400 0.600 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.402 0.598 33 H 0.409 0.591 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.000 11.213 -10.553 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.132 4.132 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.169 1.169 7 C -0.471 4.471 8 H 0.110 0.890 9 C 0.097 3.903 10 C -0.238 4.238 11 C -0.090 4.090 12 C -0.286 4.286 13 C 0.092 3.908 14 N -0.324 5.324 15 C 0.411 3.589 16 O -0.402 6.402 17 N -0.326 5.326 18 O -0.099 6.099 19 C -0.073 4.073 20 C 0.306 3.694 21 N -0.418 5.418 22 O -0.381 6.381 23 C -0.250 4.250 24 H 0.095 0.905 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.232 0.768 29 H 0.239 0.761 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.231 0.769 33 H 0.241 0.759 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.667 10.528 -10.715 21.705 hybrid contribution 1.693 1.638 -0.454 2.400 sum 17.361 12.166 -11.169 23.962 Atomic orbital electron populations 1.69646 1.07977 1.30134 1.35892 1.26113 0.94802 1.01642 0.90686 0.86390 0.80673 0.79933 0.79508 1.18714 1.22367 1.16904 1.19493 0.91173 0.95550 1.40843 0.88958 1.17667 0.93474 0.90541 0.88625 1.21048 0.92843 1.04104 1.05812 1.20395 0.94922 0.96673 0.97020 1.20012 0.97566 1.00695 1.10301 1.17216 0.92804 0.89126 0.91641 1.42313 1.20206 1.44844 1.25082 1.15432 0.85144 0.79062 0.79306 1.91075 1.15461 1.58939 1.74732 1.46216 1.14303 1.52269 1.19831 1.90807 1.26509 1.64563 1.28019 1.22663 0.96242 0.95990 0.92383 1.19820 0.87419 0.78999 0.83175 1.43606 1.19369 1.50413 1.28419 1.90896 1.18455 1.53445 1.75263 1.21266 0.93510 1.05769 1.04416 0.90517 0.88039 0.88325 0.88609 0.76810 0.76078 0.88870 0.88824 0.76946 0.75851 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -23.50 13.93 55.55 0.77 -22.72 16 2 C 0.09 2.47 5.47 -17.34 -0.09 2.38 16 3 Si 0.91 23.19 24.40 -169.99 -4.15 19.05 16 4 H -0.26 -7.03 6.67 56.52 0.38 -6.66 16 5 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.25 -6.17 6.66 56.52 0.38 -5.79 16 7 C -0.44 -12.85 9.61 -37.74 -0.36 -13.21 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 C 0.10 2.73 5.13 -106.85 -0.55 2.18 16 10 C -0.22 -5.22 9.79 -38.84 -0.38 -5.60 16 11 C -0.07 -1.49 10.02 -39.69 -0.40 -1.88 16 12 C -0.26 -5.35 9.97 -39.10 -0.39 -5.74 16 13 C 0.18 4.12 6.29 -83.76 -0.53 3.59 16 14 N -0.67 -11.99 5.34 -14.27 -0.08 -12.07 16 15 C 0.71 14.15 8.55 -86.92 -0.74 13.40 16 16 O -0.53 -14.06 14.19 -12.86 -0.18 -14.24 16 17 N -0.62 -8.84 6.39 27.64 0.18 -8.66 16 18 O -0.10 -1.54 10.64 -40.34 -0.43 -1.97 16 19 C 0.01 0.07 6.71 36.01 0.24 0.32 16 20 C 0.52 5.52 8.18 -10.98 -0.09 5.43 16 21 N -0.85 -4.17 8.87 31.22 0.28 -3.90 16 22 O -0.51 -8.70 17.34 -14.35 -0.25 -8.94 16 23 C -0.23 -6.05 5.63 -38.69 -0.22 -6.27 16 24 H 0.28 7.53 8.30 -40.82 -0.34 7.19 16 25 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 26 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 27 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.40 4.89 8.84 -40.82 -0.36 4.53 16 29 H 0.40 3.34 8.56 -40.82 -0.35 2.99 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.40 0.39 8.83 -40.82 -0.36 0.03 16 33 H 0.41 1.76 8.93 -40.82 -0.36 1.40 16 34 H 0.13 3.60 2.58 -52.48 -0.14 3.46 16 LS Contribution 301.43 15.07 4.54 4.54 Total: -1.00 -41.03 301.43 -6.12 -47.15 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.29 Total: 7.19 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -3.51 Total: -5.41 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 1.15 Total: -47.35 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.86 Total: -25.16 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.15 Total: 19.05 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -41.03 -6.12 -47.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562816984.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.959 kcal (2) G-P(sol) polarization free energy of solvation -41.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds