Wall clock time and date at job start Tue Mar 31 2020 01:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86805 * 119.99784 * 2 1 4 4 H 1.48509 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47078 * 299.99868 * 3 2 1 6 6 H 1.48500 * 109.47229 * 60.00458 * 3 2 1 7 7 C 1.38983 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00140 * 179.97438 * 7 2 1 9 9 N 1.37322 * 120.00284 * 359.97438 * 7 2 1 10 10 C 1.36491 * 126.07216 * 180.28107 * 9 7 2 11 11 C 1.35676 * 107.50895 * 180.16023 * 10 9 7 12 12 N 1.40597 * 126.08161 * 179.84612 * 11 10 9 13 13 C 1.34773 * 119.99887 * 179.71650 * 12 11 10 14 14 O 1.21311 * 120.00349 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00168 * 179.97438 * 13 12 11 16 16 H 1.08996 * 112.90318 * 41.67827 * 15 13 12 17 17 C 1.53777 * 113.61594 * 172.92941 * 15 13 12 18 18 C 1.53782 * 87.08365 * 89.11577 * 17 15 13 19 19 C 1.53776 * 113.61485 * 270.42600 * 15 13 12 20 20 H 1.08999 * 113.69015 * 156.31922 * 19 15 13 21 21 C 1.50700 * 113.61289 * 25.43326 * 19 15 13 22 22 O 1.20833 * 119.99882 * 285.85958 * 21 19 15 23 23 O 1.34228 * 120.00380 * 105.59024 * 21 19 15 24 24 C 1.40650 * 107.83757 * 359.57859 * 11 10 9 25 25 N 1.30913 * 108.38331 * 0.26766 * 24 11 10 26 26 H 0.96995 * 119.99872 * 359.97438 * 1 2 3 27 27 H 1.08003 * 126.24294 * 0.02562 * 10 9 7 28 28 H 0.96992 * 119.99866 * 359.71191 * 12 11 10 29 29 H 1.09007 * 113.61843 * 334.56430 * 17 15 13 30 30 H 1.09002 * 113.61669 * 203.66782 * 17 15 13 31 31 H 1.09000 * 113.61260 * 270.88826 * 18 17 15 32 32 H 1.08995 * 113.69238 * 139.99045 * 18 17 15 33 33 H 0.96703 * 117.00036 * 180.27071 * 23 21 19 34 34 H 1.07991 * 125.80706 * 180.23928 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7070 1.3465 -0.0006 5 1 1.8882 2.3965 -1.2125 6 1 1.8883 2.3965 1.2125 7 6 2.0079 -1.2036 -0.0005 8 1 3.0880 -1.2037 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8750 -3.6405 0.0044 11 6 0.8579 -4.5384 -0.0012 12 7 0.9892 -5.9383 -0.0018 13 6 -0.1100 -6.7182 -0.0019 14 8 -1.2126 -6.2124 -0.0009 15 6 0.0307 -8.2186 -0.0032 16 1 0.8173 -8.5715 0.6637 17 6 -1.3038 -8.9626 0.1704 18 6 -1.4364 -8.9204 -1.3612 19 6 0.0979 -8.8298 -1.4127 20 1 0.5918 -9.8009 -1.4459 21 6 0.6114 -7.8760 -2.4604 22 8 -0.0946 -6.9807 -2.8604 23 8 1.8550 -8.0177 -2.9453 24 6 -0.3512 -3.8199 0.0001 25 7 -0.0715 -2.5410 0.0004 26 1 -0.4850 0.8400 0.0004 27 1 2.9302 -3.8708 0.0094 28 1 1.8708 -6.3426 -0.0023 29 1 -2.0642 -8.3800 0.6907 30 1 -1.1932 -9.9701 0.5715 31 1 -1.9392 -8.0270 -1.7314 32 1 -1.8342 -9.8393 -1.7918 33 1 2.1413 -7.3794 -3.6129 34 1 -1.3418 -4.2500 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:19 Heat of formation + Delta-G solvation = -46.754253 kcal Electronic energy + Delta-G solvation = -21738.193970 eV Core-core repulsion = 18251.863295 eV Total energy + Delta-G solvation = -3486.330675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31926 -41.45171 -40.26063 -38.21137 -36.97533 -35.90609 -34.97561 -32.27582 -29.98513 -28.41004 -27.78756 -26.45683 -23.45507 -22.88053 -22.51334 -21.29727 -20.14388 -19.32366 -19.09496 -18.25924 -17.48508 -17.25665 -16.98354 -16.80813 -16.02991 -15.73157 -15.59784 -15.11086 -14.90410 -14.81517 -14.26971 -13.56973 -13.50360 -13.34003 -13.17691 -12.93420 -12.87044 -12.50639 -12.30011 -12.03736 -11.93594 -11.80224 -11.47026 -11.38092 -11.03538 -10.85664 -10.60660 -10.12041 -8.54608 -8.48714 -6.26286 1.07998 1.22449 1.38177 1.51996 1.57941 1.84673 1.97387 2.12610 2.35631 2.49252 2.90075 3.07209 3.35477 3.48072 3.70450 3.83493 4.26863 4.37961 4.40759 4.57713 4.61625 4.74490 4.81598 4.97740 5.01116 5.08995 5.14486 5.27349 5.44427 5.48323 5.64897 5.94055 6.29658 6.71793 6.73489 6.98899 7.40102 7.46105 7.66370 8.51267 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033543 B = 0.004265 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.549601 B = 6562.791944 C = 6910.089706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.022 2.978 4 H -0.239 1.239 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.355 4.355 8 H 0.142 0.858 9 N -0.167 5.167 10 C -0.084 4.084 11 C -0.040 4.040 12 N -0.617 5.617 13 C 0.503 3.497 14 O -0.567 6.567 15 C -0.114 4.114 16 H 0.155 0.845 17 C -0.107 4.107 18 C -0.130 4.130 19 C -0.082 4.082 20 H 0.183 0.817 21 C 0.470 3.530 22 O -0.547 6.547 23 O -0.507 6.507 24 C -0.061 4.061 25 N -0.311 5.311 26 H 0.276 0.724 27 H 0.188 0.812 28 H 0.416 0.584 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.053 0.947 32 H 0.111 0.889 33 H 0.421 0.579 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 -19.759 -1.184 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.840 3.160 4 H -0.161 1.161 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.486 4.486 8 H 0.160 0.840 9 N 0.063 4.937 10 C -0.234 4.234 11 C -0.146 4.146 12 N -0.262 5.262 13 C 0.291 3.709 14 O -0.445 6.445 15 C -0.136 4.136 16 H 0.172 0.828 17 C -0.144 4.144 18 C -0.167 4.167 19 C -0.101 4.101 20 H 0.200 0.800 21 C 0.314 3.686 22 O -0.436 6.436 23 O -0.319 6.319 24 C -0.236 4.236 25 N -0.144 5.144 26 H 0.086 0.914 27 H 0.205 0.795 28 H 0.253 0.747 29 H 0.080 0.920 30 H 0.162 0.838 31 H 0.072 0.928 32 H 0.129 0.871 33 H 0.282 0.718 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.620 -18.144 -1.005 19.021 hybrid contribution 0.711 0.692 -0.685 1.205 sum 6.331 -17.452 -1.690 18.641 Atomic orbital electron populations 1.70423 1.08584 1.29048 1.37467 1.26936 0.96462 1.04474 0.94065 0.84508 0.79074 0.74187 0.78214 1.16131 1.19844 1.19641 1.20694 0.92996 0.80872 1.53994 0.84036 1.44845 1.03538 1.04847 1.40422 1.21977 0.98723 0.84245 1.18448 1.17337 0.92678 0.83920 1.20685 1.42461 1.09690 1.02381 1.71675 1.20884 0.83584 0.90099 0.76374 1.90581 1.27699 1.75967 1.50261 1.22502 1.04604 0.88497 0.97958 0.82758 1.22840 0.93958 1.01845 0.95747 1.22979 0.92269 1.03422 0.98019 1.22772 0.98923 0.99697 0.88721 0.79960 1.24031 0.79302 0.83915 0.81399 1.90843 1.59042 1.34645 1.59097 1.84468 1.31537 1.58620 1.57313 1.24060 0.98923 0.91031 1.09554 1.78135 0.92154 1.16493 1.27610 0.91423 0.79489 0.74720 0.91970 0.83824 0.92788 0.87080 0.71845 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.50 11.81 21.66 0.26 -49.24 16 2 C -0.01 -0.43 5.50 84.95 0.47 0.03 16 3 Si 1.02 39.58 29.55 68.60 2.03 41.61 16 4 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.35 -19.36 10.25 84.01 0.86 -18.50 16 8 H 0.14 6.67 7.83 -2.91 -0.02 6.64 16 9 N -0.17 -9.68 3.74 -190.01 -0.71 -10.39 16 10 C -0.08 -4.05 11.49 83.37 0.96 -3.09 16 11 C -0.04 -1.95 6.90 37.73 0.26 -1.69 16 12 N -0.62 -22.24 5.39 -303.92 -1.64 -23.87 16 13 C 0.50 17.73 5.31 87.66 0.47 18.20 16 14 O -0.57 -26.13 12.65 -3.12 -0.04 -26.17 16 15 C -0.11 -2.29 4.26 -11.02 -0.05 -2.34 16 16 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 17 C -0.11 -1.85 7.43 31.12 0.23 -1.62 16 18 C -0.13 -2.63 7.15 31.12 0.22 -2.41 16 19 C -0.08 -1.41 4.21 -11.02 -0.05 -1.46 16 20 H 0.18 1.24 8.14 -2.39 -0.02 1.22 16 21 C 0.47 12.01 6.88 71.24 0.49 12.50 16 22 O -0.55 -20.82 15.93 21.94 0.35 -20.47 16 23 O -0.51 -9.43 13.42 -51.40 -0.69 -10.12 16 24 C -0.06 -3.55 10.85 85.42 0.93 -2.62 16 25 N -0.31 -19.82 10.40 -56.47 -0.59 -20.41 16 26 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.19 7.09 8.06 -2.91 -0.02 7.07 16 28 H 0.42 11.00 8.82 -92.71 -0.82 10.18 16 29 H 0.06 1.50 7.54 -2.38 -0.02 1.48 16 30 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.70 7.04 -2.39 -0.02 1.68 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.42 5.86 9.10 -74.06 -0.67 5.19 16 34 H 0.16 9.59 5.92 -2.92 -0.02 9.57 16 Total: -1.00 -90.71 299.64 3.44 -87.27 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: -0.32 Total: 34.79 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.79 Total: -2.99 kcal Atomic # 7 Polarization: -101.24 SS G_CDS: -2.68 Total: -103.92 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -0.38 Total: -56.76 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -90.71 3.44 -87.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.514 kcal (2) G-P(sol) polarization free energy of solvation -90.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds