Wall clock time and date at job start Tue Mar 31 2020 01:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86793 * 120.00091 * 2 1 4 4 H 1.48496 * 109.47193 * 239.99812 * 3 2 1 5 5 H 1.48504 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47471 * 119.99358 * 3 2 1 7 7 C 1.40030 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99872 * 170.11928 * 7 2 1 9 9 C 1.41545 * 120.00380 * 350.11000 * 7 2 1 10 10 C 1.41166 * 120.99520 * 153.79198 * 9 7 2 11 11 C 1.36593 * 119.12300 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.26052 * 0.02946 * 11 10 9 13 13 C 1.32491 * 122.22863 * 359.65013 * 12 11 10 14 14 N 1.39459 * 119.64767 * 180.32160 * 13 12 11 15 15 C 1.34779 * 120.00044 * 5.67496 * 14 13 12 16 16 O 1.21579 * 119.99806 * 5.06405 * 15 14 13 17 17 N 1.34777 * 120.00327 * 185.06276 * 15 14 13 18 18 C 1.46492 * 120.00266 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47338 * 179.97438 * 18 17 15 20 20 C 1.50700 * 109.47604 * 179.97438 * 19 18 17 21 21 O 1.20828 * 119.99399 * 0.02562 * 20 19 18 22 22 O 1.34224 * 120.00483 * 179.97438 * 20 19 18 23 23 C 1.38641 * 120.70401 * 0.64055 * 13 12 11 24 24 H 0.96998 * 120.00044 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.43849 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.36692 * 180.02562 * 11 10 9 27 27 H 0.96997 * 120.00040 * 185.67782 * 14 13 12 28 28 H 0.97003 * 119.99622 * 359.97438 * 17 15 14 29 29 H 1.09007 * 109.47125 * 299.99201 * 18 17 15 30 30 H 1.08999 * 109.47560 * 59.99640 * 18 17 15 31 31 H 1.08999 * 109.47066 * 299.99737 * 19 18 17 32 32 H 1.09009 * 109.46942 * 59.99568 * 19 18 17 33 33 H 0.96698 * 117.00391 * 180.02562 * 22 20 19 34 34 H 1.07994 * 120.66569 * 179.67892 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2124 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6965 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0755 -1.2197 -0.1600 9 6 1.3156 -2.4294 0.2116 10 6 1.8141 -3.6472 -0.2994 11 6 1.1149 -4.7987 -0.0734 12 7 -0.0143 -4.7917 0.6113 13 6 -0.5257 -3.6800 1.1194 14 7 -1.7186 -3.7357 1.8396 15 6 -2.2852 -4.9275 2.1139 16 8 -1.7112 -5.9566 1.8148 17 7 -3.4880 -4.9783 2.7197 18 6 -4.1036 -6.2737 3.0184 19 6 -5.4542 -6.0511 3.7019 20 6 -6.0878 -7.3836 4.0086 21 8 -5.5173 -8.4064 3.7114 22 8 -7.2853 -7.4343 4.6128 23 6 0.1091 -2.4610 0.9371 24 1 -0.4850 0.8400 -0.0004 25 1 2.7359 -3.6682 -0.8616 26 1 1.4929 -5.7328 -0.4623 27 1 -2.1406 -2.9168 2.1430 28 1 -3.9458 -4.1572 2.9587 29 1 -4.2521 -6.8277 2.0915 30 1 -3.4508 -6.8421 3.6809 31 1 -5.3054 -5.4972 4.6289 32 1 -6.1072 -5.4824 3.0397 33 1 -7.6512 -8.3117 4.7893 34 1 -0.3109 -1.5545 1.3470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:52 Heat of formation + Delta-G solvation = -83.086410 kcal Electronic energy + Delta-G solvation = -20453.543150 eV Core-core repulsion = 16965.636995 eV Total energy + Delta-G solvation = -3487.906155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60200 -39.74925 -38.06690 -36.55716 -35.17937 -34.19961 -33.71751 -31.24371 -30.44965 -28.43538 -25.99754 -24.89200 -22.01461 -21.72754 -21.25221 -20.11689 -18.43494 -18.11040 -17.65837 -16.72127 -16.62381 -16.00846 -15.29847 -15.17167 -14.48587 -14.24617 -14.16651 -13.96226 -13.50073 -13.40529 -12.80524 -12.59787 -12.46191 -12.13822 -11.89689 -11.71684 -11.41360 -11.19767 -10.94049 -10.89887 -10.28908 -10.13492 -9.74887 -9.59723 -9.37826 -8.87684 -7.96256 -7.71124 -7.01932 -6.73628 -4.62027 1.87621 2.45136 2.71007 2.82741 3.00745 3.04038 3.23360 3.25967 3.84739 3.87067 4.32643 4.57877 4.67275 4.72604 4.93942 5.14048 5.67403 5.71496 5.79155 5.98973 6.15743 6.54492 6.58229 6.64267 6.81497 6.95813 7.14523 7.26439 7.43654 7.50181 7.54482 7.87938 8.11779 8.37774 8.47148 8.73811 8.76955 9.16548 9.73971 10.10264 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033008 B = 0.003156 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.068278 B = 8869.191002 C = 9647.156137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.143 3.857 10 C -0.282 4.282 11 C 0.119 3.881 12 N -0.553 5.553 13 C 0.353 3.647 14 N -0.667 5.667 15 C 0.693 3.307 16 O -0.530 6.530 17 N -0.756 5.756 18 C 0.152 3.848 19 C -0.126 4.126 20 C 0.484 3.516 21 O -0.507 6.507 22 O -0.519 6.519 23 C -0.242 4.242 24 H 0.281 0.719 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.404 0.596 28 H 0.392 0.608 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.412 0.588 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 -3.073 8.147 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.134 3.866 10 C -0.306 4.306 11 C -0.035 4.035 12 N -0.272 5.272 13 C 0.127 3.873 14 N -0.315 5.315 15 C 0.392 3.608 16 O -0.400 6.400 17 N -0.416 5.416 18 C 0.027 3.973 19 C -0.164 4.164 20 C 0.325 3.675 21 O -0.394 6.394 22 O -0.331 6.331 23 C -0.268 4.268 24 H 0.092 0.908 25 H 0.120 0.880 26 H 0.140 0.860 27 H 0.239 0.761 28 H 0.225 0.775 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.271 0.729 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.565 -4.636 7.830 15.514 hybrid contribution -0.011 1.873 0.189 1.883 sum -12.576 -2.763 8.019 15.169 Atomic orbital electron populations 1.69739 1.07549 1.29204 1.35727 1.25943 0.94885 1.01406 0.92032 0.86255 0.79974 0.79797 0.80029 1.18929 1.20300 1.18805 1.19548 0.95825 0.90017 1.43167 0.90105 1.17579 0.90336 0.92263 0.86398 1.21695 1.04221 0.94508 1.10188 1.21475 0.90588 0.96587 0.94806 1.67174 1.14821 1.28217 1.17013 1.17967 0.85724 0.90880 0.92696 1.42534 1.24388 1.07366 1.57217 1.16014 0.80711 0.84793 0.79294 1.91030 1.62078 1.31973 1.54927 1.45075 1.20889 1.08483 1.67120 1.20783 0.90647 0.85035 1.00817 1.21475 0.97509 0.93001 1.04406 1.23135 0.78691 0.92033 0.73617 1.90798 1.62591 1.36893 1.49158 1.84511 1.35351 1.40269 1.72984 1.21614 1.01088 0.95359 1.08741 0.90820 0.88001 0.85996 0.76102 0.77469 0.90625 0.90690 0.86851 0.86827 0.72896 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.37 10.70 55.55 0.59 -18.77 16 2 C 0.08 1.80 5.31 -17.34 -0.09 1.71 16 3 Si 0.92 17.84 29.57 -169.99 -5.03 12.82 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.64 9.14 -37.65 -0.34 -11.98 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 9 C 0.14 3.76 5.60 -106.55 -0.60 3.16 16 10 C -0.28 -6.99 9.85 -39.07 -0.38 -7.37 16 11 C 0.12 2.92 11.10 -18.04 -0.20 2.72 16 12 N -0.55 -14.45 7.90 -12.75 -0.10 -14.55 16 13 C 0.35 8.65 7.41 -154.68 -1.15 7.50 16 14 N -0.67 -13.05 5.40 -15.86 -0.09 -13.14 16 15 C 0.69 13.34 8.51 -86.92 -0.74 12.60 16 16 O -0.53 -12.82 14.64 5.30 0.08 -12.75 16 17 N -0.76 -9.78 5.56 -65.23 -0.36 -10.14 16 18 C 0.15 1.81 4.96 -4.04 -0.02 1.79 16 19 C -0.13 -0.91 5.93 -27.88 -0.17 -1.07 16 20 C 0.48 4.31 8.33 36.01 0.30 4.61 16 21 O -0.51 -6.57 16.74 -18.75 -0.31 -6.89 16 22 O -0.52 -3.26 13.42 -39.24 -0.53 -3.79 16 23 C -0.24 -6.13 8.62 -38.46 -0.33 -6.46 16 24 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 25 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 26 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 27 H 0.40 6.31 8.71 -40.82 -0.36 5.96 16 28 H 0.39 3.52 8.49 -40.82 -0.35 3.17 16 29 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 30 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.41 1.00 9.10 45.56 0.41 1.42 16 34 H 0.13 3.30 6.11 -52.49 -0.32 2.98 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -35.55 307.18 -7.52 -43.07 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -2.69 Total: 12.31 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -3.72 Total: 7.21 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.05 Total: -56.61 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.76 Total: -23.42 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.55 -7.52 -43.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.017 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds