Wall clock time and date at job start Tue Mar 31 2020 01:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86793 * 120.00091 * 2 1 4 4 H 1.48496 * 109.47193 * 239.99812 * 3 2 1 5 5 H 1.48504 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47471 * 119.99358 * 3 2 1 7 7 C 1.40030 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99872 * 170.11928 * 7 2 1 9 9 C 1.41545 * 120.00380 * 350.11000 * 7 2 1 10 10 C 1.41166 * 120.99520 * 153.79198 * 9 7 2 11 11 C 1.36593 * 119.12300 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.26052 * 0.02946 * 11 10 9 13 13 C 1.32491 * 122.22863 * 359.65013 * 12 11 10 14 14 N 1.39459 * 119.64767 * 180.32160 * 13 12 11 15 15 C 1.34779 * 120.00044 * 5.67496 * 14 13 12 16 16 O 1.21579 * 119.99806 * 5.06405 * 15 14 13 17 17 N 1.34777 * 120.00327 * 185.06276 * 15 14 13 18 18 C 1.46492 * 120.00266 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47338 * 179.97438 * 18 17 15 20 20 C 1.50700 * 109.47604 * 179.97438 * 19 18 17 21 21 O 1.20828 * 119.99399 * 0.02562 * 20 19 18 22 22 O 1.34224 * 120.00483 * 179.97438 * 20 19 18 23 23 C 1.38641 * 120.70401 * 0.64055 * 13 12 11 24 24 H 0.96998 * 120.00044 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.43849 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.36692 * 180.02562 * 11 10 9 27 27 H 0.96997 * 120.00040 * 185.67782 * 14 13 12 28 28 H 0.97003 * 119.99622 * 359.97438 * 17 15 14 29 29 H 1.09007 * 109.47125 * 299.99201 * 18 17 15 30 30 H 1.08999 * 109.47560 * 59.99640 * 18 17 15 31 31 H 1.08999 * 109.47066 * 299.99737 * 19 18 17 32 32 H 1.09009 * 109.46942 * 59.99568 * 19 18 17 33 33 H 0.96698 * 117.00391 * 180.02562 * 22 20 19 34 34 H 1.07994 * 120.66569 * 179.67892 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2124 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6965 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0755 -1.2197 -0.1600 9 6 1.3156 -2.4294 0.2116 10 6 1.8141 -3.6472 -0.2994 11 6 1.1149 -4.7987 -0.0734 12 7 -0.0143 -4.7917 0.6113 13 6 -0.5257 -3.6800 1.1194 14 7 -1.7186 -3.7357 1.8396 15 6 -2.2852 -4.9275 2.1139 16 8 -1.7112 -5.9566 1.8148 17 7 -3.4880 -4.9783 2.7197 18 6 -4.1036 -6.2737 3.0184 19 6 -5.4542 -6.0511 3.7019 20 6 -6.0878 -7.3836 4.0086 21 8 -5.5173 -8.4064 3.7114 22 8 -7.2853 -7.4343 4.6128 23 6 0.1091 -2.4610 0.9371 24 1 -0.4850 0.8400 -0.0004 25 1 2.7359 -3.6682 -0.8616 26 1 1.4929 -5.7328 -0.4623 27 1 -2.1406 -2.9168 2.1430 28 1 -3.9458 -4.1572 2.9587 29 1 -4.2521 -6.8277 2.0915 30 1 -3.4508 -6.8421 3.6809 31 1 -5.3054 -5.4972 4.6289 32 1 -6.1072 -5.4824 3.0397 33 1 -7.6512 -8.3117 4.7893 34 1 -0.3109 -1.5545 1.3470 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480293.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:51 Heat of formation + Delta-G solvation = -110.210867 kcal Electronic energy + Delta-G solvation = -20454.719355 eV Core-core repulsion = 16965.636995 eV Total energy + Delta-G solvation = -3489.082360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51659 -41.15707 -39.80635 -37.25155 -36.44880 -35.91244 -35.48555 -32.51038 -32.14347 -30.13876 -27.89858 -25.92561 -23.82048 -23.34130 -22.09536 -21.70996 -19.63038 -19.44538 -19.06319 -17.76318 -17.49511 -17.38808 -16.96560 -16.47412 -16.03485 -15.92865 -15.80052 -15.10502 -15.02109 -14.63561 -14.31697 -14.15805 -14.10619 -13.16799 -12.96343 -12.84691 -12.69294 -12.64081 -12.50296 -12.06794 -11.89725 -11.71619 -11.49895 -11.30952 -11.16007 -10.15309 -9.89712 -9.61082 -8.83839 -8.55424 -6.55527 0.85037 1.03514 1.20503 1.43496 1.44424 1.54564 1.60511 2.22610 2.25072 2.28824 2.87157 3.27691 3.55887 3.78176 4.03205 4.17224 4.35104 4.58288 4.70975 4.78772 4.87000 4.88036 4.95861 5.12844 5.26967 5.39757 5.51717 5.63280 5.66848 5.86736 6.01209 6.29374 6.58402 6.81646 6.85573 6.98715 7.01420 7.62064 7.91276 8.31660 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033008 B = 0.003156 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.068278 B = 8869.191002 C = 9647.156137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.483 4.483 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.296 4.296 11 C 0.112 3.888 12 N -0.582 5.582 13 C 0.350 3.650 14 N -0.658 5.658 15 C 0.689 3.311 16 O -0.583 6.583 17 N -0.726 5.726 18 C 0.152 3.848 19 C -0.112 4.112 20 C 0.490 3.510 21 O -0.558 6.558 22 O -0.508 6.508 23 C -0.257 4.257 24 H 0.292 0.708 25 H 0.116 0.884 26 H 0.146 0.854 27 H 0.422 0.578 28 H 0.417 0.583 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.429 0.571 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.122 -1.176 9.022 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.514 4.514 8 H 0.101 0.899 9 C 0.104 3.896 10 C -0.319 4.319 11 C -0.041 4.041 12 N -0.302 5.302 13 C 0.123 3.877 14 N -0.307 5.307 15 C 0.388 3.612 16 O -0.458 6.458 17 N -0.386 5.386 18 C 0.027 3.973 19 C -0.150 4.150 20 C 0.334 3.666 21 O -0.449 6.449 22 O -0.322 6.322 23 C -0.283 4.283 24 H 0.103 0.897 25 H 0.134 0.866 26 H 0.163 0.837 27 H 0.260 0.740 28 H 0.254 0.746 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.291 0.709 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.054 -2.710 8.755 16.778 hybrid contribution 0.309 1.256 -0.053 1.295 sum -13.745 -1.453 8.702 16.333 Atomic orbital electron populations 1.69768 1.08812 1.30843 1.34727 1.26800 0.95739 1.04439 0.90938 0.85130 0.78654 0.75222 0.79973 1.18675 1.18924 1.18449 1.19843 0.96200 0.90918 1.44428 0.89902 1.18024 0.91234 0.93263 0.87033 1.21874 1.04969 0.94353 1.10747 1.21894 0.90303 0.97575 0.94340 1.67296 1.15707 1.29054 1.18130 1.18185 0.86818 0.90314 0.92369 1.42375 1.23216 1.08597 1.56535 1.16234 0.81927 0.83732 0.79260 1.90995 1.63944 1.33631 1.57205 1.44725 1.18645 1.10248 1.64949 1.20760 0.92870 0.83825 0.99796 1.21399 0.94829 0.92773 1.05983 1.23358 0.78843 0.91810 0.72580 1.90799 1.63996 1.38665 1.51430 1.84468 1.33974 1.41777 1.71990 1.21597 1.01479 0.95601 1.09589 0.89725 0.86625 0.83676 0.73968 0.74576 0.93015 0.92793 0.83642 0.83819 0.70861 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.15 10.70 21.84 0.23 -38.91 16 2 C 0.04 1.75 5.31 85.29 0.45 2.21 16 3 Si 0.99 35.49 29.57 68.60 2.03 37.51 16 4 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 5 H -0.27 -8.88 7.11 99.48 0.71 -8.17 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.48 -24.91 9.14 23.52 0.21 -24.70 16 8 H 0.08 4.08 7.87 -2.91 -0.02 4.06 16 9 C 0.11 6.05 5.60 -21.11 -0.12 5.93 16 10 C -0.30 -14.90 9.85 22.60 0.22 -14.68 16 11 C 0.11 5.58 11.10 84.27 0.94 6.51 16 12 N -0.58 -31.00 7.90 -194.27 -1.53 -32.54 16 13 C 0.35 17.39 7.41 132.76 0.98 18.38 16 14 N -0.66 -25.56 5.40 -322.37 -1.74 -27.30 16 15 C 0.69 26.43 8.51 179.05 1.52 27.95 16 16 O -0.58 -28.89 14.64 -3.97 -0.06 -28.95 16 17 N -0.73 -17.64 5.56 -478.55 -2.66 -20.30 16 18 C 0.15 3.50 4.96 86.38 0.43 3.93 16 19 C -0.11 -1.29 5.93 29.85 0.18 -1.11 16 20 C 0.49 7.85 8.33 71.24 0.59 8.44 16 21 O -0.56 -14.42 16.74 21.96 0.37 -14.05 16 22 O -0.51 -5.01 13.42 -51.35 -0.69 -5.70 16 23 C -0.26 -13.19 8.62 23.00 0.20 -12.99 16 24 H 0.29 12.48 8.29 -92.71 -0.77 11.71 16 25 H 0.12 5.31 8.06 -2.91 -0.02 5.29 16 26 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 27 H 0.42 12.72 8.71 -92.71 -0.81 11.91 16 28 H 0.42 6.18 8.49 -92.71 -0.79 5.39 16 29 H 0.05 1.46 8.10 -2.38 -0.02 1.44 16 30 H 0.05 1.49 8.10 -2.39 -0.02 1.48 16 31 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.14 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.43 1.11 9.10 -74.06 -0.67 0.44 16 34 H 0.13 6.63 6.11 -2.91 -0.02 6.62 16 Total: -1.00 -79.72 307.18 0.48 -79.24 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -1.08 Total: 31.13 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 5.61 Total: 19.87 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -5.70 Total: -119.06 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -0.38 Total: -48.70 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.51 kcal Total: -79.72 0.48 -79.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480293.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.972 kcal (2) G-P(sol) polarization free energy of solvation -79.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds