Wall clock time and date at job start Tue Mar 31 2020 00:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46969 * 2 1 4 4 C 1.36962 * 119.99605 * 261.62755 * 3 2 1 5 5 H 1.08002 * 119.99427 * 197.36463 * 4 3 2 6 6 C 1.38978 * 120.00503 * 17.36421 * 4 3 2 7 7 N 1.31407 * 119.99906 * 8.53477 * 6 4 3 8 8 Si 1.86799 * 120.00346 * 188.54178 * 6 4 3 9 9 H 1.48505 * 109.46881 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47276 * 119.99833 * 8 6 4 11 11 H 1.48504 * 109.46969 * 239.99852 * 8 6 4 12 12 C 1.34772 * 120.00357 * 81.62569 * 3 2 1 13 13 O 1.21631 * 119.99759 * 5.55815 * 12 3 2 14 14 C 1.47416 * 120.00413 * 185.55810 * 12 3 2 15 15 C 1.37949 * 126.76442 * 202.68637 * 14 12 3 16 16 O 1.33611 * 108.38548 * 180.30138 * 15 14 12 17 17 C 1.34894 * 109.89742 * 359.72865 * 16 15 14 18 18 C 1.41669 * 125.67886 * 179.97438 * 17 16 15 19 19 C 1.35667 * 120.00060 * 9.15884 * 18 17 16 20 20 C 1.41370 * 120.00167 * 26.15699 * 19 18 17 21 21 O 1.21699 * 119.99701 * 13.32960 * 20 19 18 22 22 O 1.34985 * 120.00101 * 193.33385 * 20 19 18 23 23 C 1.36515 * 108.64093 * 359.97438 * 17 16 15 24 24 H 1.08996 * 109.47156 * 60.00077 * 1 2 3 25 25 H 1.08992 * 109.47024 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46946 * 300.00190 * 1 2 3 27 27 H 1.08998 * 109.47268 * 240.00072 * 2 1 3 28 28 H 1.08996 * 109.47156 * 119.99922 * 2 1 3 29 29 H 0.97000 * 120.00200 * 179.97438 * 7 6 4 30 30 H 1.07997 * 125.80146 * 0.06059 * 15 14 12 31 31 H 1.08009 * 119.99902 * 189.16771 * 18 17 16 32 32 H 1.08007 * 119.99798 * 206.14821 * 19 18 17 33 33 H 0.96701 * 114.00010 * 179.97438 * 22 20 19 34 34 H 1.08004 * 126.69721 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4094 1.9693 -1.1735 5 1 3.0204 2.8596 -1.1539 6 6 2.0201 1.4203 -2.3895 7 7 1.1436 0.4416 -2.4179 8 14 2.7428 2.0734 -3.9834 9 1 3.6995 3.1682 -3.6811 10 1 3.4517 0.9773 -4.6912 11 1 1.6512 2.5944 -4.8449 12 6 2.0827 2.0733 1.1547 13 8 1.8323 1.5214 2.2092 14 6 2.4566 3.4992 1.1397 15 6 2.9834 4.2258 2.1873 16 8 3.1778 5.4813 1.7738 17 6 2.8011 5.6034 0.4843 18 6 2.8643 6.7907 -0.2860 19 6 3.5036 7.8831 0.2025 20 6 4.5399 7.7300 1.1517 21 8 5.0247 6.6318 1.3515 22 8 4.9917 8.8019 1.8365 23 6 2.3489 4.3925 0.0452 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 0.8716 0.0587 -3.2666 30 1 3.1981 3.8453 3.1750 31 1 2.4034 6.8262 -1.2622 32 1 3.2208 8.8697 -0.1340 33 1 5.7002 8.5987 2.4625 34 1 1.9770 4.1618 -0.9422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589719125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:38 Heat of formation + Delta-G solvation = -83.533551 kcal Electronic energy + Delta-G solvation = -21825.474912 eV Core-core repulsion = 18305.256616 eV Total energy + Delta-G solvation = -3520.218296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.58227 -41.08529 -40.29153 -37.10663 -36.97894 -35.22838 -34.19674 -33.43684 -31.47356 -30.11754 -26.92604 -25.93083 -25.14078 -23.04996 -22.36902 -21.37031 -20.46512 -19.28222 -18.78618 -17.91615 -17.61047 -17.17808 -16.80238 -16.40196 -16.29433 -16.00088 -15.50198 -15.11532 -14.90657 -14.51584 -14.26175 -14.03903 -13.65785 -13.45452 -13.26839 -13.03633 -12.85555 -12.55875 -12.45255 -12.18530 -11.99995 -11.73460 -11.58227 -11.29723 -10.87119 -10.66601 -10.45416 -9.72190 -8.93223 -8.22054 -5.90137 -0.69531 0.67755 1.37205 1.50267 1.51962 1.63012 1.98992 2.23047 2.29571 2.47302 2.62139 2.95441 3.19359 3.76236 4.03088 4.10738 4.39507 4.46741 4.53116 4.67614 4.81251 4.84215 4.90306 4.93285 5.09356 5.17073 5.25825 5.38482 5.46088 5.50677 5.64815 5.77813 5.84613 6.07757 6.50574 7.06465 7.10076 7.55740 7.96384 8.72916 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.019809 B = 0.005851 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.162974 B = 4784.630134 C = 5880.685839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.132 3.868 3 N -0.435 5.435 4 C -0.353 4.353 5 H 0.116 0.884 6 C -0.004 4.004 7 N -0.882 5.882 8 Si 0.988 3.012 9 H -0.257 1.257 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.498 3.502 13 O -0.647 6.647 14 C -0.231 4.231 15 C 0.042 3.958 16 O -0.144 6.144 17 C -0.048 4.048 18 C 0.049 3.951 19 C -0.231 4.231 20 C 0.499 3.501 21 O -0.544 6.544 22 O -0.508 6.508 23 C -0.115 4.115 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.011 0.989 27 H 0.100 0.900 28 H 0.023 0.977 29 H 0.272 0.728 30 H 0.227 0.773 31 H 0.206 0.794 32 H 0.187 0.813 33 H 0.419 0.581 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 14.210 -0.708 14.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 N -0.151 5.151 4 C -0.480 4.480 5 H 0.134 0.866 6 C -0.206 4.206 7 N -0.520 5.520 8 Si 0.812 3.188 9 H -0.181 1.181 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.289 3.711 13 O -0.539 6.539 14 C -0.235 4.235 15 C -0.032 4.032 16 O -0.037 6.037 17 C -0.096 4.096 18 C 0.031 3.969 19 C -0.249 4.249 20 C 0.348 3.652 21 O -0.438 6.438 22 O -0.320 6.320 23 C -0.134 4.134 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.118 0.882 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.244 0.756 31 H 0.222 0.778 32 H 0.205 0.795 33 H 0.278 0.722 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.994 13.864 -0.469 14.191 hybrid contribution 0.650 -0.717 -0.116 0.974 sum 3.643 13.147 -0.585 13.655 Atomic orbital electron populations 1.21786 0.95797 1.00570 0.99848 1.21306 0.95179 0.82956 0.99677 1.43861 1.53392 1.11395 1.06417 1.20475 1.31047 1.13599 0.82905 0.86644 1.26152 0.95589 0.96682 1.02173 1.70158 1.29290 1.25181 1.27420 0.84927 0.78304 0.78512 0.77104 1.18067 1.20898 1.19718 1.17634 0.83657 0.85920 0.83893 1.90562 1.59534 1.71728 1.32042 1.20686 1.10903 0.95582 0.96365 1.25084 0.97390 0.80701 0.99986 1.84105 1.64155 1.28991 1.26446 1.20016 1.08099 0.97496 0.83989 1.21364 0.92813 0.85978 0.96727 1.21602 0.99533 1.01920 1.01866 1.20132 0.83963 0.81483 0.79632 1.91022 1.59383 1.27948 1.65442 1.85046 1.55206 1.38019 1.53679 1.22822 0.99686 0.90530 1.00363 0.91107 0.92376 0.96964 0.88210 0.95848 0.91746 0.75639 0.77761 0.79535 0.72190 0.80473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 9.63 71.98 0.69 -5.08 16 2 C 0.13 6.68 5.25 86.38 0.45 7.13 16 3 N -0.44 -22.76 2.65 -639.24 -1.69 -24.45 16 4 C -0.35 -17.36 7.80 84.07 0.66 -16.71 16 5 H 0.12 5.42 4.74 -2.91 -0.01 5.40 16 6 C 0.00 -0.18 5.19 84.93 0.44 0.26 16 7 N -0.88 -42.80 8.11 21.67 0.18 -42.63 16 8 Si 0.99 36.68 29.56 68.60 2.03 38.71 16 9 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 10 H -0.28 -10.69 7.11 99.48 0.71 -9.99 16 11 H -0.27 -9.75 7.11 99.48 0.71 -9.05 16 12 C 0.50 26.09 7.52 86.66 0.65 26.74 16 13 O -0.65 -36.83 16.68 -4.13 -0.07 -36.90 16 14 C -0.23 -10.26 5.75 -20.08 -0.12 -10.37 16 15 C 0.04 1.60 12.01 67.75 0.81 2.41 16 16 O -0.14 -5.13 7.21 21.68 0.16 -4.97 16 17 C -0.05 -1.57 5.96 22.71 0.14 -1.43 16 18 C 0.05 1.10 9.79 22.52 0.22 1.32 16 19 C -0.23 -4.64 9.92 22.45 0.22 -4.42 16 20 C 0.50 12.67 7.39 68.59 0.51 13.17 16 21 O -0.54 -18.43 13.90 27.04 0.38 -18.05 16 22 O -0.51 -9.67 13.54 -59.03 -0.80 -10.47 16 23 C -0.11 -4.38 8.48 22.72 0.19 -4.19 16 24 H 0.07 3.52 6.36 -2.39 -0.02 3.51 16 25 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.10 5.17 5.79 -2.39 -0.01 5.16 16 28 H 0.02 1.20 7.61 -2.39 -0.02 1.18 16 29 H 0.27 12.41 8.31 -92.71 -0.77 11.64 16 30 H 0.23 7.51 8.06 -2.91 -0.02 7.49 16 31 H 0.21 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.42 4.97 8.98 -74.06 -0.67 4.30 16 34 H 0.18 6.65 6.05 -2.91 -0.02 6.63 16 Total: -1.00 -69.65 295.95 5.55 -64.11 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.50 Total: 25.82 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 4.87 Total: 8.83 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -1.52 Total: -67.08 kcal Atomic # 8 Polarization: -70.05 SS G_CDS: -0.34 Total: -70.39 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.71 kcal Total: -69.65 5.55 -64.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589719125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.426 kcal (2) G-P(sol) polarization free energy of solvation -69.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds