Wall clock time and date at job start Tue Mar 31 2020 00:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 C 1.33062 * 125.04341 * 89.72574 * 14 13 12 16 16 C 1.39343 * 114.91667 * 179.79566 * 15 14 13 17 17 C 1.48431 * 122.76456 * 180.22887 * 16 15 14 18 18 N 1.33687 * 126.31198 * 359.97438 * 17 16 15 19 19 N 1.28565 * 109.85417 * 179.85205 * 18 17 16 20 20 N 1.28915 * 109.72255 * 0.42126 * 19 18 17 21 21 H 0.97006 * 126.43470 * 179.76882 * 20 19 18 22 22 N 1.31998 * 126.30726 * 180.30304 * 17 16 15 23 23 C 1.34536 * 114.47096 * 0.48738 * 16 15 14 24 24 S 1.75814 * 125.03735 * 270.01874 * 14 13 12 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.00899 * 110.99467 * 321.04346 * 12 2 1 30 30 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 31 31 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 32 32 H 1.08000 * 122.54012 * 359.96745 * 15 14 13 33 33 H 1.08006 * 125.22452 * 179.72072 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 6 1.8204 -1.1661 -4.4318 16 6 2.5097 -1.7799 -5.4757 17 6 1.8266 -2.5407 -6.5517 18 7 0.5095 -2.7381 -6.6680 19 7 0.2640 -3.4380 -7.7181 20 7 1.3690 -3.7304 -8.3143 21 1 1.4649 -4.2516 -9.1268 22 7 2.4081 -3.1523 -7.5666 23 6 3.8458 -1.6306 -5.4252 24 16 4.2778 -0.6734 -4.0147 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 1.4496 -1.4978 -1.4101 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 0.7450 -1.2079 -4.3418 33 1 4.5455 -2.0366 -6.1408 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589786825.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:07 Heat of formation + Delta-G solvation = 135.520796 kcal Electronic energy + Delta-G solvation = -18182.088164 eV Core-core repulsion = 15178.707150 eV Total energy + Delta-G solvation = -3003.381013 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 279.085 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.26475 -39.37824 -37.69453 -34.96145 -34.32108 -33.88021 -31.86959 -29.30375 -27.21828 -26.82581 -25.53427 -24.90135 -22.35212 -22.06254 -20.53372 -19.71888 -18.58155 -17.66752 -17.60474 -16.82147 -16.66323 -15.98450 -15.26813 -15.22025 -15.07405 -14.21676 -14.18675 -13.87691 -13.53546 -13.45672 -13.10059 -13.03288 -12.80365 -12.59888 -12.33863 -12.13362 -12.02688 -12.01278 -11.90771 -11.83461 -11.74333 -11.03164 -10.45420 -9.72023 -9.34308 -8.96599 -8.06744 -6.17509 -0.42560 0.02045 0.57072 0.82309 0.94615 1.23266 1.45744 1.46385 1.57061 2.01544 2.47139 2.74081 3.21420 3.21932 3.68680 3.96097 4.13398 4.21072 4.34747 4.51974 4.55253 4.69581 4.79667 4.92809 5.09135 5.12253 5.20323 5.33244 5.44099 5.68109 5.72896 5.84397 6.29211 6.64223 6.79919 6.96512 7.03166 7.52247 8.98621 Molecular weight = 279.08amu Principal moments of inertia in cm(-1) A = 0.027826 B = 0.003437 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.002053 B = 8144.441207 C = 8532.370345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.217 3.783 3 H 0.008 0.992 4 C -0.514 4.514 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.681 5.681 13 C 0.129 3.871 14 C -0.175 4.175 15 C -0.112 4.112 16 C -0.051 4.051 17 C 0.266 3.734 18 N -0.323 5.323 19 N 0.005 4.995 20 N -0.271 5.271 21 H 0.489 0.511 22 N -0.295 5.295 23 C -0.167 4.167 24 S 0.191 5.809 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.027 0.973 28 H 0.261 0.739 29 H 0.333 0.667 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.398 -6.334 -21.817 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.026 0.974 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.311 5.311 13 C -0.002 4.002 14 C -0.292 4.292 15 C -0.143 4.143 16 C -0.068 4.068 17 C -0.017 4.017 18 N -0.200 5.200 19 N 0.009 4.991 20 N -0.123 5.123 21 H 0.348 0.652 22 N -0.140 5.140 23 C -0.307 4.307 24 S 0.457 5.543 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.923 -5.860 -21.216 22.794 hybrid contribution -1.843 -0.805 -0.119 2.014 sum 4.081 -6.665 -21.335 22.721 Atomic orbital electron populations 1.22257 0.99947 0.99294 1.00250 1.18951 0.90066 0.92943 0.87213 0.97423 1.21451 1.30358 1.12484 0.91012 0.92692 1.25687 0.95478 0.95894 1.01804 1.70002 1.38027 1.24262 1.23956 0.85542 0.77932 0.79068 0.78971 1.20301 1.21040 1.19459 1.60757 1.58168 1.09321 1.02864 1.20320 0.99184 0.94086 0.86560 1.24267 0.97221 1.06471 1.01281 1.19876 1.01730 0.98903 0.93772 1.16170 0.92037 1.03899 0.94695 1.23247 0.88289 0.96157 0.94045 1.75519 1.15544 1.16525 1.12431 1.78302 1.12084 1.07512 1.01207 1.51020 1.00127 1.37541 1.23573 0.65181 1.78805 1.12057 1.16125 1.07017 1.26162 0.97857 1.03899 1.02813 1.84348 1.05103 1.47892 1.17003 0.91914 0.95024 0.95353 0.93028 0.84958 0.93632 0.90865 0.83783 0.78711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.53 8.94 71.98 0.64 -6.88 16 2 C 0.22 10.79 2.57 44.17 0.11 10.90 16 3 H 0.01 0.43 7.80 -2.39 -0.02 0.41 16 4 C -0.51 -28.43 8.84 25.60 0.23 -28.20 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.52 5.30 84.66 0.45 0.97 16 7 N -0.92 -52.93 11.32 21.45 0.24 -52.69 16 8 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.68 -28.16 6.22 -499.47 -3.11 -31.26 16 13 C 0.13 4.41 5.96 85.56 0.51 4.92 16 14 C -0.17 -5.03 6.00 24.53 0.15 -4.88 16 15 C -0.11 -3.08 9.80 21.38 0.21 -2.87 16 16 C -0.05 -1.27 5.79 -21.14 -0.12 -1.39 16 17 C 0.27 6.59 8.01 137.42 1.10 7.69 16 18 N -0.32 -8.53 12.24 -52.28 -0.64 -9.17 16 19 N 0.01 0.11 13.42 37.02 0.50 0.60 16 20 N -0.27 -4.01 8.44 37.02 0.31 -3.70 16 21 H 0.49 2.19 8.96 -340.34 -3.05 -0.86 16 22 N -0.30 -6.02 12.79 -52.24 -0.67 -6.69 16 23 C -0.17 -3.51 10.95 66.97 0.73 -2.78 16 24 S 0.19 4.52 23.31 -56.49 -1.32 3.21 16 25 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 26 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 27 H 0.03 1.18 7.45 -2.38 -0.02 1.16 16 28 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.33 13.32 8.46 -89.69 -0.76 12.56 16 30 H 0.05 1.53 7.44 -2.38 -0.02 1.52 16 31 H 0.07 2.55 8.06 -2.39 -0.02 2.53 16 32 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -64.56 305.37 -1.28 -65.84 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -2.64 Total: 10.41 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.01 Total: -22.52 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -3.36 Total: -102.92 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.32 Total: 3.21 kcal Total: -64.56 -1.28 -65.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589786825.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.362 kcal (2) G-P(sol) polarization free energy of solvation -64.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds