Wall clock time and date at job start Tue Mar 31 2020 00:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46731 * 2 1 4 4 C 1.50703 * 109.47460 * 240.00744 * 2 1 3 5 5 H 1.07995 * 119.99541 * 240.00140 * 4 2 1 6 6 C 1.37875 * 120.00058 * 59.99190 * 4 2 1 7 7 N 1.31513 * 120.00180 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99831 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47258 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47028 * 120.00127 * 8 6 4 11 11 H 1.48501 * 109.47245 * 240.00088 * 8 6 4 12 12 C 1.50694 * 109.47548 * 120.00024 * 2 1 3 13 13 O 1.21293 * 120.00245 * 120.00166 * 12 2 1 14 14 N 1.34783 * 120.00072 * 300.01021 * 12 2 1 15 15 C 1.40144 * 119.99813 * 184.47346 * 14 12 2 16 16 C 1.38626 * 120.01634 * 325.29437 * 15 14 12 17 17 C 1.38466 * 120.32696 * 180.26029 * 16 15 14 18 18 C 1.37795 * 120.37757 * 359.76310 * 17 16 15 19 19 C 1.39830 * 120.02120 * 359.97438 * 18 17 16 20 20 C 1.47410 * 120.16286 * 179.97438 * 19 18 17 21 21 O 1.21506 * 120.00240 * 180.02562 * 20 19 18 22 22 O 1.34753 * 120.00061 * 0.02562 * 20 19 18 23 23 C 1.39281 * 120.01533 * 145.04118 * 15 14 12 24 24 O 1.35707 * 120.18361 * 359.97438 * 23 15 14 25 25 H 1.09007 * 109.46801 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47216 * 299.99577 * 1 2 3 27 27 H 1.08994 * 109.47327 * 60.00003 * 1 2 3 28 28 H 0.96998 * 120.00460 * 179.97438 * 7 6 4 29 29 H 0.96992 * 120.00064 * 4.46424 * 14 12 2 30 30 H 1.07993 * 119.83739 * 0.02562 * 16 15 14 31 31 H 1.08006 * 119.81389 * 179.74325 * 17 16 15 32 32 H 1.07997 * 119.99161 * 180.02562 * 18 17 16 33 33 H 0.96706 * 116.99992 * 180.02562 * 22 20 19 34 34 H 0.96702 * 113.99832 * 269.72266 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3215 -1.1200 -4.0080 9 1 3.1457 -2.2873 -3.6039 10 1 1.1662 -1.5864 -4.8162 11 1 3.1466 -0.1869 -4.8165 12 6 2.0324 -0.7104 1.2304 13 8 2.7298 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 2.2493 -0.8533 3.5972 16 6 2.4855 -2.2192 3.6145 17 6 3.0164 -2.8227 4.7420 18 6 3.3201 -2.0718 5.8567 19 6 3.0932 -0.6921 5.8539 20 6 3.4165 0.1141 7.0449 21 8 3.2177 1.3128 7.0394 22 8 3.9325 -0.4782 8.1397 23 6 2.5565 -0.0800 4.7142 24 8 2.3324 1.2584 4.7000 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7094 1.1620 -3.4843 29 1 1.0969 0.4988 2.5447 30 1 2.2507 -2.8161 2.7457 31 1 3.1932 -3.8882 4.7478 32 1 3.7344 -2.5490 6.7325 33 1 4.1279 0.0916 8.8963 34 1 3.0832 1.7795 4.3838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211874.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:52 Heat of formation + Delta-G solvation = -167.535030 kcal Electronic energy + Delta-G solvation = -21284.219964 eV Core-core repulsion = 17760.359091 eV Total energy + Delta-G solvation = -3523.860873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.97029 -41.00780 -39.64747 -37.78302 -36.88772 -35.86041 -35.69411 -32.77366 -31.66355 -30.08101 -27.23690 -25.84116 -25.09341 -23.19696 -22.66318 -20.97022 -19.69744 -19.27061 -18.49204 -18.21160 -17.95718 -16.98414 -16.76417 -16.61619 -16.43281 -16.32402 -15.68492 -15.22773 -15.04605 -14.55121 -14.39615 -13.61894 -13.44136 -13.36576 -13.00333 -12.95808 -12.73258 -12.61134 -12.53804 -12.25604 -12.14354 -12.03543 -11.63737 -11.32123 -11.06591 -10.62585 -10.38164 -9.96119 -9.18193 -8.16848 -6.27877 -0.44291 0.09472 1.40230 1.42893 1.46374 1.55321 1.76068 1.91302 2.26037 2.46693 2.58368 3.07630 3.13520 3.87569 3.90787 4.09322 4.18195 4.34352 4.51382 4.70201 4.74305 4.89266 4.96011 5.04763 5.13074 5.30804 5.42683 5.45403 5.58242 5.71183 5.76631 5.90399 6.15056 6.52120 6.60659 6.81237 7.00055 7.26315 7.42209 8.89218 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.035038 B = 0.003935 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.930489 B = 7114.340656 C = 7568.215622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.027 3.973 3 H 0.045 0.955 4 C -0.528 4.528 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.276 1.276 12 C 0.526 3.474 13 O -0.555 6.555 14 N -0.666 5.666 15 C 0.098 3.902 16 C -0.091 4.091 17 C -0.115 4.115 18 C -0.052 4.052 19 C -0.156 4.156 20 C 0.536 3.464 21 O -0.532 6.532 22 O -0.501 6.501 23 C 0.136 3.864 24 O -0.484 6.484 25 H 0.027 0.973 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.265 0.735 29 H 0.421 0.579 30 H 0.130 0.870 31 H 0.167 0.833 32 H 0.174 0.826 33 H 0.434 0.566 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.684 -3.282 19.360 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.006 3.994 3 H 0.063 0.937 4 C -0.567 4.567 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.783 3.217 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.432 6.432 14 N -0.313 5.313 15 C 0.003 3.997 16 C -0.111 4.111 17 C -0.133 4.133 18 C -0.071 4.071 19 C -0.159 4.159 20 C 0.381 3.619 21 O -0.423 6.423 22 O -0.315 6.315 23 C 0.087 3.913 24 O -0.297 6.297 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.259 0.741 30 H 0.148 0.852 31 H 0.184 0.816 32 H 0.191 0.809 33 H 0.296 0.704 34 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 3.409 -3.890 18.955 19.648 hybrid contribution 0.428 0.805 -0.862 1.255 sum 3.837 -3.085 18.093 18.751 Atomic orbital electron populations 1.21600 0.94929 0.99780 1.01835 1.18832 0.95414 0.96126 0.89024 0.93682 1.21296 1.31733 1.12881 0.90759 0.92768 1.25597 0.95120 0.95696 1.01506 1.69954 1.37153 1.23572 1.24355 0.85520 0.78299 0.78604 0.79327 1.20144 1.20074 1.20185 1.21806 0.77927 0.83841 0.84762 1.90505 1.38697 1.27123 1.86867 1.43636 1.47721 1.36515 1.03414 1.18296 1.01627 0.92758 0.87010 1.21662 0.97280 0.92543 0.99634 1.21381 0.98600 1.02142 0.91213 1.21643 0.95300 0.90693 0.99437 1.19349 1.08481 0.95342 0.92690 1.20471 0.73243 0.85173 0.83056 1.90917 1.51062 1.17051 1.83272 1.84500 1.75294 1.46349 1.25366 1.18192 0.97128 0.84388 0.91562 1.84696 1.43395 1.13250 1.88333 0.95363 0.93223 0.90827 0.92568 0.74079 0.85245 0.81559 0.80904 0.70394 0.73476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.86 71.98 0.64 -4.85 16 2 C 0.03 1.32 2.65 -12.29 -0.03 1.29 16 3 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 4 C -0.53 -29.54 8.37 25.60 0.21 -29.32 16 5 H 0.05 3.21 6.75 -2.91 -0.02 3.19 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -50.20 11.32 21.45 0.24 -49.96 16 8 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.53 23.07 6.99 87.65 0.61 23.68 16 13 O -0.56 -27.24 12.87 -3.07 -0.04 -27.28 16 14 N -0.67 -23.16 5.11 -303.20 -1.55 -24.71 16 15 C 0.10 3.11 6.32 38.16 0.24 3.35 16 16 C -0.09 -2.72 8.69 22.42 0.19 -2.53 16 17 C -0.12 -2.45 10.02 22.22 0.22 -2.22 16 18 C -0.05 -0.99 9.61 22.55 0.22 -0.77 16 19 C -0.16 -3.72 5.88 -20.03 -0.12 -3.84 16 20 C 0.54 11.87 8.26 70.24 0.58 12.45 16 21 O -0.53 -14.98 15.94 26.82 0.43 -14.55 16 22 O -0.50 -6.80 12.68 -56.63 -0.72 -7.51 16 23 C 0.14 3.81 6.74 22.96 0.15 3.96 16 24 O -0.48 -13.26 11.13 -69.33 -0.77 -14.03 16 25 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.05 1.80 7.47 -2.39 -0.02 1.78 16 27 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 28 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.42 13.01 7.87 -92.71 -0.73 12.28 16 30 H 0.13 4.54 6.18 -2.91 -0.02 4.52 16 31 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.17 2.12 7.61 -2.91 -0.02 2.10 16 33 H 0.43 1.93 9.11 -74.05 -0.67 1.25 16 34 H 0.41 8.72 9.06 -74.06 -0.67 8.05 16 Total: -1.00 -70.89 300.38 2.11 -68.78 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -0.88 Total: 20.63 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 3.37 Total: 2.75 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -1.31 Total: -74.67 kcal Atomic # 8 Polarization: -62.28 SS G_CDS: -1.10 Total: -63.38 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -70.89 2.11 -68.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211874.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.754 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds