Wall clock time and date at job start Tue Mar 31 2020 00:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 C 1.50699 * 109.47116 * 120.00779 * 2 1 3 5 5 H 1.07992 * 120.00517 * 119.99538 * 4 2 1 6 6 C 1.37884 * 119.99482 * 299.99206 * 4 2 1 7 7 N 1.31514 * 119.99492 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00197 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47302 * 89.99639 * 8 6 4 10 10 H 1.48495 * 109.46991 * 209.99870 * 8 6 4 11 11 H 1.48500 * 109.47213 * 329.99731 * 8 6 4 12 12 C 1.50708 * 109.46555 * 240.00168 * 2 1 3 13 13 O 1.21292 * 119.99739 * 239.99946 * 12 2 1 14 14 N 1.34773 * 120.00024 * 60.00482 * 12 2 1 15 15 C 1.40135 * 119.99939 * 185.52573 * 14 12 2 16 16 C 1.38635 * 120.01916 * 24.84120 * 15 14 12 17 17 C 1.38470 * 120.33286 * 179.74357 * 16 15 14 18 18 C 1.37797 * 120.36738 * 0.23272 * 17 16 15 19 19 C 1.39821 * 120.03128 * 0.04459 * 18 17 16 20 20 C 1.47414 * 120.16121 * 180.02562 * 19 18 17 21 21 O 1.21509 * 119.99700 * 180.02562 * 20 19 18 22 22 O 1.34749 * 120.00186 * 359.97438 * 20 19 18 23 23 C 1.39289 * 120.02337 * 205.11442 * 15 14 12 24 24 O 1.35712 * 120.17783 * 359.97438 * 23 15 14 25 25 H 1.09008 * 109.46665 * 299.99874 * 1 2 3 26 26 H 1.09005 * 109.47499 * 59.99294 * 1 2 3 27 27 H 1.08998 * 109.47345 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99601 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00137 * 5.52523 * 14 12 2 30 30 H 1.07996 * 119.83069 * 0.02562 * 16 15 14 31 31 H 1.07999 * 119.81134 * 180.25166 * 17 16 15 32 32 H 1.07998 * 119.97623 * 180.02562 * 18 17 16 33 33 H 0.96699 * 117.00097 * 180.02562 * 22 20 19 34 34 H 0.96699 * 113.99968 * 270.27531 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8593 3.5564 8 14 0.6250 1.2790 2.6542 9 1 -0.8026 0.8728 2.6998 10 1 0.9762 1.9949 3.9069 11 1 0.8473 2.1765 1.4922 12 6 2.0322 -0.7104 -1.2306 13 8 2.7295 -1.6966 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.0752 -0.9738 -3.5965 16 6 2.2917 -2.3405 -3.5114 17 6 2.6509 -3.0630 -4.6367 18 6 2.8018 -2.4307 -5.8517 19 6 2.5930 -1.0520 -5.9538 20 6 2.7531 -0.3727 -7.2523 21 8 2.5713 0.8257 -7.3375 22 8 3.1020 -1.0806 -8.3445 23 6 2.2300 -0.3197 -4.8165 24 8 2.0242 1.0189 -4.9038 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9035 -0.5281 4.4374 29 1 1.2172 0.5826 -2.5452 30 1 2.1750 -2.8449 -2.5636 31 1 2.8135 -4.1280 -4.5616 32 1 3.0818 -3.0005 -6.7254 33 1 3.1952 -0.5914 -9.1734 34 1 1.1117 1.2639 -5.1098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:55 Heat of formation + Delta-G solvation = -131.542076 kcal Electronic energy + Delta-G solvation = -21340.865349 eV Core-core repulsion = 17818.565247 eV Total energy + Delta-G solvation = -3522.300102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93728 -39.92594 -38.50270 -36.80968 -36.05751 -34.41850 -34.03245 -31.50527 -30.67443 -29.07972 -25.26836 -24.86474 -23.83489 -22.03646 -21.57327 -19.62481 -18.67182 -18.28779 -17.42908 -16.84652 -16.44937 -16.05445 -15.68130 -15.46272 -15.24939 -14.81868 -14.30856 -14.24746 -13.63570 -13.33887 -13.02979 -12.58303 -12.44153 -12.28990 -11.94170 -11.74910 -11.70141 -11.19357 -11.13371 -10.71791 -10.59566 -10.48623 -10.20915 -9.73317 -9.22537 -9.06917 -8.81371 -8.66174 -7.97293 -6.13649 -4.15478 0.54005 1.12314 2.43192 2.75187 3.16092 3.20848 3.25566 3.31633 3.40596 3.68325 3.97810 4.30212 4.75041 4.89205 5.04932 5.15146 5.21896 5.38116 5.59320 5.74677 5.96333 5.97609 6.10790 6.16618 6.26185 6.29416 6.31346 6.48528 6.59205 6.87648 7.01627 7.38932 7.51414 7.73116 7.77345 8.41751 8.71639 9.03803 9.43901 10.98961 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.035258 B = 0.004138 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.956229 B = 6764.534011 C = 7340.381674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.002 4.002 3 H 0.057 0.943 4 C -0.511 4.511 5 H 0.095 0.905 6 C 0.073 3.927 7 N -0.892 5.892 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.267 1.267 12 C 0.529 3.471 13 O -0.506 6.506 14 N -0.677 5.677 15 C 0.131 3.869 16 C -0.085 4.085 17 C -0.119 4.119 18 C -0.078 4.078 19 C -0.143 4.143 20 C 0.528 3.472 21 O -0.502 6.502 22 O -0.515 6.515 23 C 0.130 3.870 24 O -0.472 6.472 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.266 0.734 29 H 0.410 0.590 30 H 0.161 0.839 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.412 0.588 34 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 -0.203 -20.931 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 H 0.075 0.925 4 C -0.549 4.549 5 H 0.113 0.887 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.192 1.192 12 C 0.320 3.680 13 O -0.379 6.379 14 N -0.322 5.322 15 C 0.034 3.966 16 C -0.105 4.105 17 C -0.137 4.137 18 C -0.097 4.097 19 C -0.146 4.146 20 C 0.373 3.627 21 O -0.390 6.390 22 O -0.327 6.327 23 C 0.082 3.918 24 O -0.282 6.282 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.246 0.754 30 H 0.178 0.822 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.270 0.730 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.555 -0.741 -20.038 20.213 hybrid contribution -1.244 1.641 -0.496 2.118 sum -3.799 0.900 -20.534 20.902 Atomic orbital electron populations 1.22144 0.96924 1.01751 0.99567 1.19345 0.93416 0.97806 0.91764 0.92519 1.20881 1.32623 1.14343 0.87081 0.88725 1.24965 0.95733 0.96541 0.95706 1.69870 1.45059 1.40077 0.97946 0.86922 0.80672 0.83734 0.77305 1.20408 1.22147 1.19193 1.21649 0.78245 0.84659 0.83466 1.90546 1.35319 1.26101 1.85899 1.43950 1.57559 1.26411 1.04310 1.18162 1.00127 0.91515 0.86805 1.21820 0.96092 0.91759 1.00878 1.21104 1.00333 1.00701 0.91592 1.21280 0.97566 0.92227 0.98615 1.19120 1.11328 0.94279 0.89842 1.20652 0.73149 0.84824 0.84125 1.90918 1.46798 1.15489 1.85825 1.84566 1.81969 1.45865 1.20304 1.18133 1.00285 0.83070 0.90348 1.84856 1.33643 1.17026 1.92634 0.92908 0.94747 0.92149 0.92402 0.75423 0.82154 0.84564 0.84337 0.72974 0.75441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.58 37.16 0.32 -2.49 16 2 C 0.00 -0.04 2.23 -92.92 -0.21 -0.25 16 3 H 0.06 1.23 7.20 -51.93 -0.37 0.85 16 4 C -0.51 -14.17 8.96 -34.44 -0.31 -14.48 16 5 H 0.09 2.98 7.00 -52.49 -0.37 2.61 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 8 Si 0.88 20.62 24.37 -169.99 -4.14 16.47 16 9 H -0.28 -6.23 6.87 56.52 0.39 -5.84 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -5.78 6.53 56.52 0.37 -5.41 16 12 C 0.53 10.88 6.95 -10.98 -0.08 10.80 16 13 O -0.51 -11.94 12.62 5.55 0.07 -11.87 16 14 N -0.68 -10.84 5.14 -9.76 -0.05 -10.89 16 15 C 0.13 1.99 6.44 -83.52 -0.54 1.45 16 16 C -0.08 -1.27 8.71 -39.35 -0.34 -1.61 16 17 C -0.12 -1.38 10.02 -39.66 -0.40 -1.78 16 18 C -0.08 -0.85 9.61 -39.15 -0.38 -1.22 16 19 C -0.14 -1.81 5.88 -104.89 -0.62 -2.42 16 20 C 0.53 6.31 8.26 34.47 0.28 6.60 16 21 O -0.50 -7.23 15.94 -26.60 -0.42 -7.65 16 22 O -0.52 -4.31 12.68 -40.63 -0.51 -4.82 16 23 C 0.13 1.80 6.74 -38.51 -0.26 1.54 16 24 O -0.47 -6.14 10.99 -40.75 -0.45 -6.59 16 25 H 0.05 1.07 3.27 -51.92 -0.17 0.90 16 26 H 0.03 0.51 7.70 -51.93 -0.40 0.11 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.41 5.38 7.95 -40.82 -0.32 5.06 16 30 H 0.16 2.73 5.77 -52.49 -0.30 2.43 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.14 1.19 7.61 -52.49 -0.40 0.79 16 33 H 0.41 1.56 9.11 45.56 0.42 1.97 16 34 H 0.39 3.33 9.06 45.56 0.41 3.75 16 LS Contribution 293.19 15.07 4.42 4.42 Total: -1.00 -35.13 293.19 -4.47 -39.60 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -1.54 Total: 9.32 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.62 Total: -1.92 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.72 Total: -36.96 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -1.32 Total: -30.93 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.14 Total: 16.47 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -35.13 -4.47 -39.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.940 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds