Wall clock time and date at job start Tue Mar 31 2020 00:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 C 1.50699 * 109.47116 * 120.00779 * 2 1 3 5 5 H 1.07992 * 120.00517 * 119.99538 * 4 2 1 6 6 C 1.37884 * 119.99482 * 299.99206 * 4 2 1 7 7 N 1.31514 * 119.99492 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00197 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47302 * 89.99639 * 8 6 4 10 10 H 1.48495 * 109.46991 * 209.99870 * 8 6 4 11 11 H 1.48500 * 109.47213 * 329.99731 * 8 6 4 12 12 C 1.50708 * 109.46555 * 240.00168 * 2 1 3 13 13 O 1.21292 * 119.99739 * 239.99946 * 12 2 1 14 14 N 1.34773 * 120.00024 * 60.00482 * 12 2 1 15 15 C 1.40135 * 119.99939 * 185.52573 * 14 12 2 16 16 C 1.38635 * 120.01916 * 24.84120 * 15 14 12 17 17 C 1.38470 * 120.33286 * 179.74357 * 16 15 14 18 18 C 1.37797 * 120.36738 * 0.23272 * 17 16 15 19 19 C 1.39821 * 120.03128 * 0.04459 * 18 17 16 20 20 C 1.47414 * 120.16121 * 180.02562 * 19 18 17 21 21 O 1.21509 * 119.99700 * 180.02562 * 20 19 18 22 22 O 1.34749 * 120.00186 * 359.97438 * 20 19 18 23 23 C 1.39289 * 120.02337 * 205.11442 * 15 14 12 24 24 O 1.35712 * 120.17783 * 359.97438 * 23 15 14 25 25 H 1.09008 * 109.46665 * 299.99874 * 1 2 3 26 26 H 1.09005 * 109.47499 * 59.99294 * 1 2 3 27 27 H 1.08998 * 109.47345 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99601 * 180.02562 * 7 6 4 29 29 H 0.96997 * 120.00137 * 5.52523 * 14 12 2 30 30 H 1.07996 * 119.83069 * 0.02562 * 16 15 14 31 31 H 1.07999 * 119.81134 * 180.25166 * 17 16 15 32 32 H 1.07998 * 119.97623 * 180.02562 * 18 17 16 33 33 H 0.96699 * 117.00097 * 180.02562 * 22 20 19 34 34 H 0.96699 * 113.99968 * 270.27531 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8593 3.5564 8 14 0.6250 1.2790 2.6542 9 1 -0.8026 0.8728 2.6998 10 1 0.9762 1.9949 3.9069 11 1 0.8473 2.1765 1.4922 12 6 2.0322 -0.7104 -1.2306 13 8 2.7295 -1.6966 -1.1193 14 7 1.7066 -0.2499 -2.4546 15 6 2.0752 -0.9738 -3.5965 16 6 2.2917 -2.3405 -3.5114 17 6 2.6509 -3.0630 -4.6367 18 6 2.8018 -2.4307 -5.8517 19 6 2.5930 -1.0520 -5.9538 20 6 2.7531 -0.3727 -7.2523 21 8 2.5713 0.8257 -7.3375 22 8 3.1020 -1.0806 -8.3445 23 6 2.2300 -0.3197 -4.8165 24 8 2.0242 1.0189 -4.9038 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9035 -0.5281 4.4374 29 1 1.2172 0.5826 -2.5452 30 1 2.1750 -2.8449 -2.5636 31 1 2.8135 -4.1280 -4.5616 32 1 3.0818 -3.0005 -6.7254 33 1 3.1952 -0.5914 -9.1734 34 1 1.1117 1.2639 -5.1098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:54 Heat of formation + Delta-G solvation = -160.550814 kcal Electronic energy + Delta-G solvation = -21342.123262 eV Core-core repulsion = 17818.565247 eV Total energy + Delta-G solvation = -3523.558015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.03328 -41.07015 -39.69892 -37.79687 -36.89120 -35.89024 -35.78258 -33.41243 -31.75105 -30.22492 -27.14625 -25.87386 -25.34349 -23.19624 -22.69416 -21.03258 -19.77054 -19.26563 -18.82404 -18.31485 -17.88286 -17.14358 -16.88586 -16.62756 -16.38761 -16.34940 -15.77039 -15.33120 -15.10755 -14.69722 -14.46207 -14.10382 -13.76091 -13.43706 -13.37939 -12.90138 -12.82794 -12.56529 -12.53499 -12.21783 -12.10231 -11.70933 -11.49761 -11.41127 -11.25749 -10.78622 -10.49896 -9.96128 -9.13088 -8.28173 -6.36753 -0.44767 0.09030 1.33596 1.40581 1.43627 1.51205 1.75133 1.83399 2.23743 2.33761 2.64648 3.00943 3.05641 3.79572 3.87040 4.02138 4.16264 4.28434 4.37788 4.48208 4.56345 4.72150 4.75432 4.96496 5.04454 5.10270 5.30370 5.40150 5.41216 5.49030 5.58389 5.76031 6.20422 6.48539 6.67444 6.78420 7.00239 7.18011 7.30764 8.89076 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.035258 B = 0.004138 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.956229 B = 6764.534011 C = 7340.381674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.005 4.005 3 H 0.071 0.929 4 C -0.523 4.523 5 H 0.035 0.965 6 C 0.009 3.991 7 N -0.950 5.950 8 Si 0.957 3.043 9 H -0.259 1.259 10 H -0.301 1.301 11 H -0.232 1.232 12 C 0.530 3.470 13 O -0.551 6.551 14 N -0.658 5.658 15 C 0.103 3.897 16 C -0.103 4.103 17 C -0.114 4.114 18 C -0.056 4.056 19 C -0.154 4.154 20 C 0.536 3.464 21 O -0.531 6.531 22 O -0.502 6.502 23 C 0.137 3.863 24 O -0.483 6.483 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.268 0.732 29 H 0.425 0.575 30 H 0.132 0.868 31 H 0.163 0.837 32 H 0.172 0.828 33 H 0.434 0.566 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.951 1.307 -24.171 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.089 0.911 4 C -0.561 4.561 5 H 0.053 0.947 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.782 3.218 9 H -0.184 1.184 10 H -0.229 1.229 11 H -0.155 1.155 12 C 0.320 3.680 13 O -0.427 6.427 14 N -0.304 5.304 15 C 0.008 3.992 16 C -0.123 4.123 17 C -0.132 4.132 18 C -0.075 4.075 19 C -0.156 4.156 20 C 0.381 3.619 21 O -0.422 6.422 22 O -0.316 6.316 23 C 0.088 3.912 24 O -0.295 6.295 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.263 0.737 30 H 0.149 0.851 31 H 0.180 0.820 32 H 0.189 0.811 33 H 0.296 0.704 34 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.984 0.785 -23.384 23.734 hybrid contribution -0.703 1.034 0.331 1.294 sum -4.687 1.819 -23.053 23.595 Atomic orbital electron populations 1.22041 0.93982 1.02038 1.01766 1.19277 0.95693 0.97581 0.90160 0.91089 1.21053 1.31921 1.13058 0.90093 0.94685 1.25988 0.97379 1.00551 0.94840 1.70064 1.47430 1.42726 0.98761 0.85749 0.78934 0.79118 0.78040 1.18423 1.22922 1.15462 1.21320 0.78010 0.84078 0.84594 1.90546 1.37453 1.27990 1.86710 1.43465 1.56997 1.26699 1.03272 1.18258 1.02409 0.91716 0.86859 1.21742 0.97471 0.92169 1.00937 1.21358 0.99197 1.01885 0.90791 1.21614 0.95055 0.91682 0.99126 1.19339 1.11190 0.95006 0.90108 1.20451 0.72578 0.84297 0.84560 1.90914 1.48250 1.16674 1.86342 1.84503 1.80963 1.45510 1.20625 1.18107 0.99714 0.83340 0.90036 1.84801 1.35452 1.16582 1.92682 0.93372 0.89591 0.93044 0.92345 0.73671 0.85076 0.81956 0.81099 0.70379 0.73215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 8.58 71.98 0.62 -4.45 16 2 C -0.01 -0.24 2.23 -12.28 -0.03 -0.27 16 3 H 0.07 2.93 7.20 -2.39 -0.02 2.91 16 4 C -0.52 -30.31 8.96 25.60 0.23 -30.08 16 5 H 0.03 2.39 7.00 -2.91 -0.02 2.37 16 6 C 0.01 0.54 5.45 84.66 0.46 1.00 16 7 N -0.95 -59.94 13.96 21.45 0.30 -59.65 16 8 Si 0.96 42.04 24.37 68.60 1.67 43.71 16 9 H -0.26 -10.55 6.87 99.48 0.68 -9.87 16 10 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.23 -8.80 6.53 99.48 0.65 -8.15 16 12 C 0.53 22.15 6.95 87.66 0.61 22.76 16 13 O -0.55 -27.56 12.62 -3.07 -0.04 -27.60 16 14 N -0.66 -20.49 5.14 -303.19 -1.56 -22.05 16 15 C 0.10 3.06 6.44 38.16 0.25 3.31 16 16 C -0.10 -3.06 8.71 22.42 0.20 -2.86 16 17 C -0.11 -2.44 10.02 22.22 0.22 -2.22 16 18 C -0.06 -1.04 9.61 22.55 0.22 -0.82 16 19 C -0.15 -3.46 5.88 -20.04 -0.12 -3.57 16 20 C 0.54 11.14 8.26 70.24 0.58 11.72 16 21 O -0.53 -13.97 15.94 26.81 0.43 -13.54 16 22 O -0.50 -6.37 12.68 -56.60 -0.72 -7.09 16 23 C 0.14 3.51 6.74 22.96 0.15 3.66 16 24 O -0.48 -11.51 10.99 -69.38 -0.76 -12.27 16 25 H 0.05 1.78 3.27 -2.38 -0.01 1.78 16 26 H 0.09 2.20 7.70 -2.38 -0.02 2.18 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.42 10.16 7.95 -92.71 -0.74 9.42 16 30 H 0.13 4.74 5.77 -2.91 -0.02 4.73 16 31 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.17 2.08 7.61 -2.91 -0.02 2.06 16 33 H 0.43 1.54 9.11 -74.06 -0.67 0.87 16 34 H 0.41 5.97 9.06 -74.06 -0.67 5.30 16 Total: -1.00 -81.95 293.19 1.75 -80.20 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.96 Total: 20.12 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 3.39 Total: -1.84 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.26 Total: -81.70 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -1.09 Total: -60.49 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.67 Total: 43.71 kcal Total: -81.95 1.75 -80.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.354 kcal (2) G-P(sol) polarization free energy of solvation -81.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds