Wall clock time and date at job start Tue Mar 31 2020 01:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47502 * 270.00347 * 3 2 1 5 5 H 1.48507 * 109.47078 * 30.00266 * 3 2 1 6 6 H 1.48496 * 109.47116 * 149.99788 * 3 2 1 7 7 C 1.37869 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99724 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00313 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47595 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47600 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21493 * 119.99885 * 359.97438 * 13 12 11 15 15 C 1.48320 * 119.99810 * 180.27205 * 13 12 11 16 16 C 1.39685 * 119.99594 * 179.44257 * 15 13 12 17 17 N 1.31795 * 119.99920 * 179.75271 * 16 15 13 18 18 C 1.32974 * 119.99944 * 0.52877 * 17 16 15 19 19 C 1.48213 * 120.00095 * 179.75307 * 18 17 16 20 20 O 1.21413 * 119.99980 * 179.97438 * 19 18 17 21 21 O 1.34667 * 120.00214 * 359.97438 * 19 18 17 22 22 C 1.39652 * 119.99160 * 359.72695 * 18 17 16 23 23 N 1.31831 * 120.00428 * 0.02562 * 22 18 17 24 24 H 0.97000 * 120.00464 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47333 * 59.99564 * 9 7 2 26 26 H 1.09002 * 109.47271 * 299.99998 * 9 7 2 27 27 H 1.08999 * 109.47616 * 59.99678 * 10 9 7 28 28 H 1.09011 * 109.47134 * 299.99765 * 10 9 7 29 29 H 1.08998 * 109.47382 * 59.99524 * 11 10 9 30 30 H 1.09002 * 109.47216 * 299.99960 * 11 10 9 31 31 H 0.97001 * 120.00074 * 359.97438 * 12 11 10 32 32 H 1.07995 * 119.99899 * 0.02562 * 16 15 13 33 33 H 0.96696 * 116.99806 * 180.02562 * 21 19 18 34 34 H 1.08001 * 119.99702 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1939 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 6 5.5515 -2.6364 -0.0022 12 7 6.0399 -4.0176 -0.0027 13 6 7.3650 -4.2638 -0.0023 14 8 8.1545 -3.3403 -0.0019 15 6 7.8594 -5.6622 -0.0089 16 6 9.2327 -5.9173 -0.0201 17 7 9.6722 -7.1598 -0.0211 18 6 8.8081 -8.1706 -0.0219 19 6 9.3022 -9.5679 -0.0285 20 8 8.5133 -10.4908 -0.0288 21 8 10.6262 -9.8140 -0.0342 22 6 7.4351 -7.9153 -0.0160 23 7 6.9957 -6.6724 -0.0102 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 3.6579 -3.1497 -0.8924 28 1 3.6586 -3.1509 0.8876 29 1 5.9149 -2.1233 0.8881 30 1 5.9149 -2.1218 -0.8918 31 1 5.4097 -4.7549 -0.0026 32 1 9.9344 -5.0964 -0.0236 33 1 10.9004 -10.7412 -0.0387 34 1 6.7333 -8.7362 -0.0171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:36 Heat of formation + Delta-G solvation = -82.409678 kcal Electronic energy + Delta-G solvation = -19917.585086 eV Core-core repulsion = 16429.708276 eV Total energy + Delta-G solvation = -3487.876810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.05766 -40.49749 -39.42223 -36.76553 -35.79727 -35.16031 -33.37950 -32.55395 -31.45648 -27.99224 -26.61582 -25.26638 -23.50699 -22.60373 -21.14940 -20.41460 -19.24706 -18.44117 -18.03943 -17.77451 -16.74446 -16.59288 -15.87543 -15.83759 -15.56817 -15.04204 -14.96329 -14.25673 -13.97388 -13.89419 -13.48528 -12.74562 -12.41263 -12.24748 -12.13362 -12.00258 -11.92990 -11.60467 -11.16941 -10.94118 -10.74186 -10.17336 -10.14416 -9.99629 -9.82484 -9.65455 -9.26347 -9.08331 -8.58219 -6.08621 -4.07762 -0.68570 0.34988 1.55411 2.07553 2.45673 2.74816 3.21642 3.29082 3.32576 3.36959 3.40228 3.45870 3.69614 4.28342 4.41804 4.47054 4.62282 4.92383 5.25140 5.41144 5.51626 5.54423 5.74021 5.90923 6.12540 6.31397 6.36121 6.54173 6.71289 6.80190 7.17710 7.22879 7.31124 7.36295 7.72717 7.92415 8.47464 8.95215 9.53226 11.04558 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044057 B = 0.002603 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.385707 B =10756.299298 C =11365.914379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.111 3.889 12 N -0.696 5.696 13 C 0.565 3.435 14 O -0.524 6.524 15 C 0.074 3.926 16 C 0.105 3.895 17 N -0.386 5.386 18 C 0.052 3.948 19 C 0.550 3.450 20 O -0.495 6.495 21 O -0.489 6.489 22 C 0.120 3.880 23 N -0.410 5.410 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.412 0.588 32 H 0.196 0.804 33 H 0.418 0.582 34 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.408 -18.300 -0.036 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.012 4.012 12 N -0.346 5.346 13 C 0.346 3.654 14 O -0.400 6.400 15 C -0.069 4.069 16 C -0.058 4.058 17 N -0.103 5.103 18 C -0.089 4.089 19 C 0.390 3.610 20 O -0.381 6.381 21 O -0.300 6.300 22 C -0.041 4.041 23 N -0.127 5.127 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.248 0.752 32 H 0.213 0.787 33 H 0.278 0.722 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 20.448 -17.350 -0.028 26.817 hybrid contribution 0.179 -0.120 -0.022 0.217 sum 20.627 -17.470 -0.051 27.031 Atomic orbital electron populations 1.69908 1.06324 1.26990 1.50875 1.25031 0.94756 0.99250 0.94460 0.86773 0.80387 0.83530 0.78581 1.20243 1.21368 1.18891 1.21082 0.89256 0.94551 1.51205 0.90960 1.19502 0.97360 0.91278 0.96719 1.21731 0.90177 1.01251 1.02088 1.21841 0.96640 0.80185 1.02497 1.46087 1.06112 1.11055 1.71375 1.17592 0.83592 0.85768 0.78410 1.90832 1.55509 1.43562 1.50051 1.22857 0.92626 0.95176 0.96279 1.24002 0.94491 0.94512 0.92793 1.68630 1.37079 0.99184 1.05417 1.21289 0.92206 0.92189 1.03207 1.20119 0.80839 0.87602 0.72425 1.90958 1.57083 1.44752 1.45347 1.84659 1.24154 1.36563 1.84600 1.23903 0.93524 0.95163 0.91490 1.68641 1.37304 0.99098 1.07667 0.92665 0.96239 0.96682 0.91872 0.91857 0.91103 0.91100 0.75205 0.78689 0.72244 0.78885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.52 -14.46 9.66 -34.45 -0.33 -14.79 16 8 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 10 C -0.11 -2.04 5.27 -26.73 -0.14 -2.18 16 11 C 0.11 1.69 5.67 -4.04 -0.02 1.66 16 12 N -0.70 -9.08 5.55 -61.10 -0.34 -9.42 16 13 C 0.56 7.37 7.82 -12.11 -0.09 7.27 16 14 O -0.52 -8.13 16.34 5.37 0.09 -8.04 16 15 C 0.07 0.79 6.76 -82.71 -0.56 0.23 16 16 C 0.10 1.00 10.77 -17.03 -0.18 0.82 16 17 N -0.39 -3.74 10.27 -9.31 -0.10 -3.84 16 18 C 0.05 0.46 6.76 -82.75 -0.56 -0.10 16 19 C 0.55 4.38 8.33 34.83 0.29 4.67 16 20 O -0.49 -4.71 17.13 -19.20 -0.33 -5.04 16 21 O -0.49 -2.89 13.26 -40.40 -0.54 -3.43 16 22 C 0.12 1.00 10.77 -17.02 -0.18 0.82 16 23 N -0.41 -4.07 9.70 -9.28 -0.09 -4.16 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 26 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.41 4.77 7.82 -40.82 -0.32 4.45 16 32 H 0.20 1.58 7.64 -52.49 -0.40 1.18 16 33 H 0.42 0.33 9.11 45.56 0.42 0.75 16 34 H 0.19 1.18 7.64 -52.49 -0.40 0.78 16 LS Contribution 311.60 15.07 4.70 4.70 Total: -1.00 -33.87 311.60 -5.25 -39.12 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -2.75 Total: 0.25 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.00 Total: -0.14 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.25 Total: -44.10 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.78 Total: -16.51 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.87 -5.25 -39.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.292 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds