Wall clock time and date at job start Tue Mar 31 2020 01:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00283 * 2 1 4 4 H 1.48499 * 109.47353 * 269.99873 * 3 2 1 5 5 H 1.48501 * 109.47527 * 30.00174 * 3 2 1 6 6 H 1.48504 * 109.47311 * 150.00385 * 3 2 1 7 7 C 1.37878 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00292 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00143 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47429 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.98198 * 125.32502 * 10 9 7 12 12 C 1.35230 * 107.86355 * 180.12580 * 11 10 9 13 13 C 1.40409 * 107.86568 * 359.56881 * 12 11 10 14 14 N 1.40161 * 125.97274 * 180.22685 * 13 12 11 15 15 C 1.34781 * 120.00041 * 0.02562 * 14 13 12 16 16 O 1.21294 * 119.99842 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00026 * 179.97438 * 15 14 13 18 18 C 1.50704 * 115.55267 * 34.42091 * 17 15 14 19 19 O 1.20823 * 120.00036 * 145.58069 * 18 17 15 20 20 O 1.34231 * 119.99782 * 325.58026 * 18 17 15 21 21 C 1.53007 * 117.49998 * 248.75072 * 17 15 14 22 22 C 1.52998 * 117.50030 * 180.08897 * 17 15 14 23 23 N 1.31216 * 108.05555 * 0.27095 * 13 12 11 24 24 H 0.97001 * 119.99555 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47471 * 59.99070 * 9 7 2 26 26 H 1.09005 * 109.47040 * 299.99504 * 9 7 2 27 27 H 1.08005 * 126.06424 * 359.95865 * 11 10 9 28 28 H 1.08002 * 126.06937 * 179.84096 * 12 11 10 29 29 H 0.97001 * 120.00028 * 180.02562 * 14 13 12 30 30 H 0.96694 * 117.00310 * 179.97438 * 20 18 17 31 31 H 1.09000 * 117.49391 * 0.02562 * 21 17 15 32 32 H 1.08994 * 117.49903 * 145.02417 * 21 17 15 33 33 H 1.08999 * 117.50361 * 214.98063 * 22 17 15 34 34 H 1.09001 * 117.49564 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5755 -0.0013 11 6 4.8597 -3.1117 -0.8927 12 6 5.0565 -4.4056 -0.5525 13 6 4.2950 -4.6694 0.5972 14 7 4.2236 -5.8946 1.2743 15 6 4.9289 -6.9530 0.8284 16 8 5.6257 -6.8452 -0.1586 17 6 4.8527 -8.2701 1.5567 18 6 3.5159 -8.5967 2.1711 19 8 3.1328 -9.7419 2.2105 20 8 2.7510 -7.6153 2.6746 21 6 6.1052 -8.7405 2.2990 22 6 5.6782 -9.4328 1.0022 23 7 3.6610 -3.5688 0.9264 24 1 -0.4849 0.8401 0.0004 25 1 3.8745 -0.6809 0.8904 26 1 3.8751 -0.6799 -0.8895 27 1 5.3087 -2.5990 -1.7306 28 1 5.6907 -5.1098 -1.0705 29 1 3.6667 -5.9807 2.0638 30 1 1.9017 -7.8735 3.0580 31 1 6.9842 -8.0970 2.2609 32 1 5.9623 -9.2864 3.2315 33 1 5.2547 -10.4340 1.0822 34 1 6.2768 -9.2449 0.1109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610472.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:49 Heat of formation + Delta-G solvation = -5.319402 kcal Electronic energy + Delta-G solvation = -21052.230656 eV Core-core repulsion = 17567.696731 eV Total energy + Delta-G solvation = -3484.533925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36096 -40.53204 -39.32483 -37.13412 -36.01047 -34.79951 -33.29244 -31.31820 -29.45822 -27.60712 -26.32832 -23.48939 -23.01554 -22.31299 -21.05589 -20.08814 -19.71789 -18.68456 -17.60991 -17.07353 -16.70875 -16.22755 -15.69994 -15.48447 -15.06156 -14.79357 -14.51624 -14.28176 -13.62249 -13.23450 -13.00663 -12.53233 -12.35522 -12.21370 -12.05673 -11.92829 -11.64934 -11.22995 -11.13496 -10.93316 -10.78474 -10.67362 -10.10999 -10.02352 -9.74285 -9.54374 -8.78001 -8.22996 -7.57181 -6.24809 -4.27262 1.55351 2.07371 2.41422 2.68480 2.78090 3.14477 3.21353 3.22962 3.24453 3.64126 3.65743 4.09441 4.21679 4.25625 4.47822 4.71490 5.03009 5.12454 5.26154 5.41479 5.47014 5.66784 5.69949 6.09129 6.14265 6.34894 6.40375 6.51645 6.63453 7.22535 7.30490 7.44984 7.53727 7.78142 8.12970 8.31858 8.53453 8.84983 9.30007 10.87908 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030735 B = 0.003807 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.799382 B = 7352.456563 C = 8002.260694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.535 4.535 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.318 5.318 11 C 0.052 3.948 12 C -0.284 4.284 13 C 0.258 3.742 14 N -0.617 5.617 15 C 0.560 3.440 16 O -0.509 6.509 17 C -0.180 4.180 18 C 0.523 3.477 19 O -0.502 6.502 20 O -0.511 6.511 21 C -0.119 4.119 22 C -0.106 4.106 23 N -0.292 5.292 24 H 0.268 0.732 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.170 0.830 28 H 0.162 0.838 29 H 0.420 0.580 30 H 0.423 0.577 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.797 -15.219 4.515 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.573 4.573 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.099 5.099 11 C -0.098 4.098 12 C -0.316 4.316 13 C 0.004 3.996 14 N -0.268 5.268 15 C 0.344 3.656 16 O -0.383 6.383 17 C -0.185 4.185 18 C 0.364 3.636 19 O -0.390 6.390 20 O -0.325 6.325 21 C -0.156 4.156 22 C -0.143 4.143 23 N -0.123 5.123 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.187 0.813 28 H 0.179 0.821 29 H 0.261 0.739 30 H 0.285 0.715 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.503 -14.547 4.500 19.084 hybrid contribution -0.292 0.531 0.090 0.613 sum 11.211 -14.016 4.590 18.526 Atomic orbital electron populations 1.69873 1.06169 1.27311 1.49103 1.24829 0.94868 0.98795 0.94235 0.86903 0.80432 0.83816 0.78925 1.19702 1.20525 1.18860 1.21104 0.87763 0.95734 1.52731 0.89632 1.20063 0.97497 0.72930 0.98239 1.48649 1.32132 1.10329 1.18835 1.22561 0.95807 0.94637 0.96764 1.21537 1.11563 0.96763 1.01704 1.19110 0.99143 0.86601 0.94704 1.42557 1.46668 1.06866 1.30672 1.18806 0.79849 0.82925 0.83978 1.90664 1.39755 1.83090 1.24799 1.21017 0.90853 0.97846 1.08750 1.21698 0.84788 0.82720 0.74371 1.90736 1.72171 1.21822 1.54235 1.84261 1.35314 1.41450 1.71454 1.23250 0.93076 1.01740 0.97584 1.23277 0.97876 0.94454 0.98668 1.77415 1.23484 0.95599 1.15787 0.92167 0.93980 0.93284 0.81292 0.82100 0.73883 0.71544 0.86196 0.86718 0.86123 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 19.94 27.47 -169.99 -4.67 15.28 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 7 C -0.54 -15.02 9.79 -34.44 -0.34 -15.35 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 9 C 0.23 5.43 5.33 -5.19 -0.03 5.41 16 10 N -0.32 -7.13 3.67 -62.56 -0.23 -7.36 16 11 C 0.05 0.98 11.43 -17.24 -0.20 0.78 16 12 C -0.28 -5.44 9.61 -39.84 -0.38 -5.83 16 13 C 0.26 5.15 8.11 -154.39 -1.25 3.90 16 14 N -0.62 -9.87 5.26 -11.13 -0.06 -9.93 16 15 C 0.56 8.05 7.35 -10.99 -0.08 7.97 16 16 O -0.51 -8.40 13.39 5.55 0.07 -8.33 16 17 C -0.18 -1.90 2.56 -156.81 -0.40 -2.30 16 18 C 0.52 5.58 7.86 36.01 0.28 5.86 16 19 O -0.50 -6.26 17.02 -18.75 -0.32 -6.58 16 20 O -0.51 -4.57 10.51 -39.26 -0.41 -4.98 16 21 C -0.12 -0.87 9.94 -26.69 -0.27 -1.14 16 22 C -0.11 -0.88 9.56 -26.69 -0.26 -1.13 16 23 N -0.29 -6.69 12.42 31.44 0.39 -6.30 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 26 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 27 H 0.17 2.50 8.06 -52.48 -0.42 2.08 16 28 H 0.16 2.94 5.92 -52.49 -0.31 2.62 16 29 H 0.42 6.01 5.99 -40.82 -0.24 5.77 16 30 H 0.42 1.93 9.10 45.56 0.41 2.34 16 31 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.12 0.91 7.67 -51.93 -0.40 0.51 16 34 H 0.13 1.06 7.67 -51.93 -0.40 0.66 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -35.37 303.21 -5.45 -40.82 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -2.56 Total: 8.28 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.01 Total: 0.21 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.88 Total: -49.27 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.66 Total: -19.89 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.28 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.37 -5.45 -40.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610472.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.500 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds