Wall clock time and date at job start Tue Mar 31 2020 01:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00283 * 2 1 4 4 H 1.48499 * 109.47353 * 269.99873 * 3 2 1 5 5 H 1.48501 * 109.47527 * 30.00174 * 3 2 1 6 6 H 1.48504 * 109.47311 * 150.00385 * 3 2 1 7 7 C 1.37878 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00292 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00143 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.47429 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.98198 * 125.32502 * 10 9 7 12 12 C 1.35230 * 107.86355 * 180.12580 * 11 10 9 13 13 C 1.40409 * 107.86568 * 359.56881 * 12 11 10 14 14 N 1.40161 * 125.97274 * 180.22685 * 13 12 11 15 15 C 1.34781 * 120.00041 * 0.02562 * 14 13 12 16 16 O 1.21294 * 119.99842 * 0.02562 * 15 14 13 17 17 C 1.50692 * 120.00026 * 179.97438 * 15 14 13 18 18 C 1.50704 * 115.55267 * 34.42091 * 17 15 14 19 19 O 1.20823 * 120.00036 * 145.58069 * 18 17 15 20 20 O 1.34231 * 119.99782 * 325.58026 * 18 17 15 21 21 C 1.53007 * 117.49998 * 248.75072 * 17 15 14 22 22 C 1.52998 * 117.50030 * 180.08897 * 17 15 14 23 23 N 1.31216 * 108.05555 * 0.27095 * 13 12 11 24 24 H 0.97001 * 119.99555 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47471 * 59.99070 * 9 7 2 26 26 H 1.09005 * 109.47040 * 299.99504 * 9 7 2 27 27 H 1.08005 * 126.06424 * 359.95865 * 11 10 9 28 28 H 1.08002 * 126.06937 * 179.84096 * 12 11 10 29 29 H 0.97001 * 120.00028 * 180.02562 * 14 13 12 30 30 H 0.96694 * 117.00310 * 179.97438 * 20 18 17 31 31 H 1.09000 * 117.49391 * 0.02562 * 21 17 15 32 32 H 1.08994 * 117.49903 * 145.02417 * 21 17 15 33 33 H 1.08999 * 117.50361 * 214.98063 * 22 17 15 34 34 H 1.09001 * 117.49564 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5755 -0.0013 11 6 4.8597 -3.1117 -0.8927 12 6 5.0565 -4.4056 -0.5525 13 6 4.2950 -4.6694 0.5972 14 7 4.2236 -5.8946 1.2743 15 6 4.9289 -6.9530 0.8284 16 8 5.6257 -6.8452 -0.1586 17 6 4.8527 -8.2701 1.5567 18 6 3.5159 -8.5967 2.1711 19 8 3.1328 -9.7419 2.2105 20 8 2.7510 -7.6153 2.6746 21 6 6.1052 -8.7405 2.2990 22 6 5.6782 -9.4328 1.0022 23 7 3.6610 -3.5688 0.9264 24 1 -0.4849 0.8401 0.0004 25 1 3.8745 -0.6809 0.8904 26 1 3.8751 -0.6799 -0.8895 27 1 5.3087 -2.5990 -1.7306 28 1 5.6907 -5.1098 -1.0705 29 1 3.6667 -5.9807 2.0638 30 1 1.9017 -7.8735 3.0580 31 1 6.9842 -8.0970 2.2609 32 1 5.9623 -9.2864 3.2315 33 1 5.2547 -10.4340 1.0822 34 1 6.2768 -9.2449 0.1109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610472.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:49 Heat of formation + Delta-G solvation = -31.539689 kcal Electronic energy + Delta-G solvation = -21053.367653 eV Core-core repulsion = 17567.696731 eV Total energy + Delta-G solvation = -3485.670922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.47036 -41.80350 -40.45174 -37.95821 -36.86341 -36.20240 -35.19218 -33.12005 -31.02060 -29.24807 -27.43487 -24.88072 -23.84029 -23.62659 -22.40442 -21.50059 -20.81941 -19.68519 -19.11899 -18.52055 -18.17173 -17.22064 -17.04177 -16.66124 -16.41518 -16.02265 -15.79677 -15.33196 -15.09564 -14.82727 -14.40859 -14.00883 -13.87884 -13.73739 -13.02001 -12.81222 -12.58547 -12.57684 -12.41242 -12.33649 -11.90571 -11.82976 -11.72200 -11.62684 -11.47056 -10.98539 -10.86551 -9.79297 -9.13857 -8.37242 -6.47747 0.65843 0.90563 1.25331 1.34505 1.38247 1.41920 1.50657 1.76995 2.13167 2.25835 2.29701 2.56328 2.95529 3.28121 3.34079 3.68985 3.91411 4.04615 4.22541 4.56680 4.58978 4.61896 4.75795 4.85594 4.86896 4.88558 5.07238 5.11023 5.24827 5.39931 5.84662 5.99759 6.16127 6.40571 6.58150 6.72692 6.90401 7.05815 7.15360 8.79950 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030735 B = 0.003807 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.799382 B = 7352.456563 C = 8002.260694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.015 3.985 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.238 1.238 7 C -0.548 4.548 8 H 0.025 0.975 9 C 0.239 3.761 10 N -0.343 5.343 11 C 0.062 3.938 12 C -0.294 4.294 13 C 0.260 3.740 14 N -0.617 5.617 15 C 0.562 3.438 16 O -0.531 6.531 17 C -0.200 4.200 18 C 0.529 3.471 19 O -0.523 6.523 20 O -0.514 6.514 21 C -0.094 4.094 22 C -0.099 4.099 23 N -0.345 5.345 24 H 0.272 0.728 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.214 0.786 28 H 0.172 0.828 29 H 0.426 0.574 30 H 0.440 0.560 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.328 -14.948 4.476 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.161 1.161 7 C -0.586 4.586 8 H 0.044 0.956 9 C 0.119 3.881 10 N -0.125 5.125 11 C -0.086 4.086 12 C -0.325 4.325 13 C 0.006 3.994 14 N -0.270 5.270 15 C 0.348 3.652 16 O -0.406 6.406 17 C -0.205 4.205 18 C 0.371 3.629 19 O -0.412 6.412 20 O -0.330 6.330 21 C -0.131 4.131 22 C -0.136 4.136 23 N -0.176 5.176 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.230 0.770 28 H 0.189 0.811 29 H 0.268 0.732 30 H 0.305 0.695 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.041 -14.320 4.477 20.548 hybrid contribution -1.123 0.276 0.106 1.161 sum 12.918 -14.044 4.582 19.624 Atomic orbital electron populations 1.70054 1.08622 1.28814 1.50653 1.25928 0.95760 1.03567 0.93162 0.85601 0.79511 0.77100 0.80070 1.17729 1.20690 1.16140 1.21235 0.90552 0.93728 1.53122 0.95634 1.19910 0.94139 0.74293 0.99752 1.48544 1.33695 1.10130 1.20084 1.23286 0.94089 0.94618 0.96571 1.21773 1.11839 0.97244 1.01651 1.19523 0.97891 0.87167 0.94853 1.42778 1.47267 1.06103 1.30833 1.19424 0.78603 0.83485 0.83667 1.90633 1.40557 1.83662 1.25789 1.21012 0.92332 0.96328 1.10778 1.21661 0.84751 0.82493 0.73950 1.90730 1.72569 1.22523 1.55372 1.84221 1.36365 1.41205 1.71254 1.23490 0.91105 1.00510 0.98012 1.23399 0.96866 0.93933 0.99381 1.77328 1.25726 0.96900 1.17628 0.91884 0.93551 0.89894 0.76987 0.81124 0.73218 0.69509 0.85313 0.84419 0.85171 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.96 13.96 21.45 0.30 -57.67 16 2 C 0.01 0.82 5.47 84.65 0.46 1.29 16 3 Si 0.96 40.32 27.47 68.60 1.88 42.21 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.24 -9.01 6.54 99.48 0.65 -8.36 16 7 C -0.55 -31.58 9.79 25.60 0.25 -31.33 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 9 C 0.24 10.95 5.33 85.63 0.46 11.40 16 10 N -0.34 -15.26 3.67 -351.84 -1.29 -16.55 16 11 C 0.06 2.26 11.43 83.52 0.96 3.21 16 12 C -0.29 -11.00 9.61 22.10 0.21 -10.79 16 13 C 0.26 10.46 8.11 133.32 1.08 11.54 16 14 N -0.62 -19.77 5.26 -307.51 -1.62 -21.39 16 15 C 0.56 15.74 7.35 87.65 0.64 16.39 16 16 O -0.53 -17.08 13.39 -3.07 -0.04 -17.12 16 17 C -0.20 -3.94 2.56 -53.67 -0.14 -4.08 16 18 C 0.53 10.75 7.86 71.24 0.56 11.31 16 19 O -0.52 -12.46 17.02 21.97 0.37 -12.08 16 20 O -0.51 -8.93 10.51 -51.43 -0.54 -9.47 16 21 C -0.09 -1.13 9.94 30.62 0.30 -0.82 16 22 C -0.10 -1.45 9.56 30.62 0.29 -1.15 16 23 N -0.35 -16.15 12.42 -54.45 -0.68 -16.82 16 24 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.05 2.08 7.20 -2.39 -0.02 2.06 16 26 H 0.08 3.24 7.50 -2.38 -0.02 3.22 16 27 H 0.21 5.50 8.06 -2.91 -0.02 5.48 16 28 H 0.17 6.02 5.92 -2.91 -0.02 6.00 16 29 H 0.43 12.29 5.99 -92.71 -0.55 11.74 16 30 H 0.44 3.80 9.10 -74.06 -0.67 3.12 16 31 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.13 1.69 7.67 -2.39 -0.02 1.67 16 34 H 0.13 1.89 7.67 -2.39 -0.02 1.87 16 Total: -1.00 -80.12 303.21 3.36 -76.76 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -0.11 Total: 25.17 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.08 Total: 6.97 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -3.29 Total: -112.43 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.21 Total: -38.67 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.88 Total: 42.21 kcal Total: -80.12 3.36 -76.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610472.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.218 kcal (2) G-P(sol) polarization free energy of solvation -80.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds