Wall clock time and date at job start Tue Mar 31 2020 00:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34671 * 116.99827 * 89.99759 * 13 3 2 15 15 O 1.21428 * 120.00618 * 359.97438 * 14 13 3 16 16 C 1.48068 * 119.99967 * 180.02562 * 14 13 3 17 17 C 1.39285 * 119.66028 * 179.72725 * 16 14 13 18 18 C 1.39800 * 118.89257 * 179.73233 * 17 16 14 19 19 C 1.48045 * 120.89128 * 180.25691 * 18 17 16 20 20 O 1.21432 * 119.99936 * 0.27726 * 19 18 17 21 21 O 1.34673 * 120.00010 * 180.27738 * 19 18 17 22 22 C 1.39846 * 118.21647 * 0.52929 * 18 17 16 23 23 C 1.38528 * 119.18758 * 359.72591 * 22 18 17 24 24 N 1.31446 * 121.04350 * 0.02562 * 23 22 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 1.07994 * 120.55450 * 359.97438 * 17 16 14 32 32 H 0.96697 * 116.99985 * 179.97438 * 21 19 18 33 33 H 1.07993 * 120.40662 * 179.75864 * 22 18 17 34 34 H 1.07995 * 119.47553 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 8 1.6559 2.0917 -1.2407 14 6 0.4689 2.7275 -1.2559 15 8 -0.2266 2.7391 -0.2606 16 6 0.0112 3.4116 -2.4868 17 6 -1.2203 4.0623 -2.4964 18 6 -1.6341 4.7078 -3.6654 19 6 -2.9320 5.4177 -3.7230 20 8 -3.6508 5.4489 -2.7448 21 8 -3.3153 6.0288 -4.8602 22 6 -0.7917 4.6601 -4.7806 23 6 0.4149 3.9860 -4.6875 24 7 0.7761 3.3936 -3.5711 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 -1.8433 4.0713 -1.6143 32 1 -4.1711 6.4790 -4.8497 33 1 -1.0781 5.1432 -5.7030 34 1 1.0692 3.9465 -5.5458 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:25 Heat of formation + Delta-G solvation = -163.922868 kcal Electronic energy + Delta-G solvation = -21128.950800 eV Core-core repulsion = 17605.246562 eV Total energy + Delta-G solvation = -3523.704238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15177 -41.28874 -40.36520 -37.73573 -37.23453 -35.55000 -34.15925 -33.40318 -32.70120 -29.39587 -26.90526 -26.30710 -24.99421 -23.43632 -22.49231 -21.47731 -19.68611 -19.20123 -18.63385 -18.36950 -17.40841 -17.25707 -16.98164 -16.82672 -16.56344 -16.45378 -15.50324 -15.18141 -14.83495 -14.77792 -14.47729 -13.97386 -13.46643 -13.36156 -13.16967 -13.10121 -12.81739 -12.72212 -12.58338 -12.14144 -12.10617 -11.85359 -11.71172 -11.43174 -11.34868 -10.86247 -10.79792 -10.56233 -10.48448 -8.27558 -6.44338 -0.83243 -0.50923 1.14441 1.41018 1.44207 1.50990 1.56540 1.58508 1.93808 2.39431 2.60856 3.01752 3.10084 3.47602 3.61206 3.61462 3.93638 4.19302 4.34365 4.36095 4.49353 4.51655 4.59141 4.75323 4.80438 5.04646 5.17924 5.26930 5.32923 5.42488 5.49603 5.63959 5.87752 6.06410 6.47193 6.62243 6.81956 6.90375 7.26112 8.79531 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.030685 B = 0.003943 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.270243 B = 7098.656898 C = 7566.790687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.221 3.779 4 H 0.010 0.990 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.983 3.017 10 H -0.272 1.272 11 H -0.274 1.274 12 H -0.263 1.263 13 O -0.339 6.339 14 C 0.502 3.498 15 O -0.529 6.529 16 C 0.073 3.927 17 C -0.057 4.057 18 C -0.098 4.098 19 C 0.544 3.456 20 O -0.538 6.538 21 O -0.487 6.487 22 C -0.051 4.051 23 C 0.098 3.902 24 N -0.440 5.440 25 H 0.031 0.969 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.271 0.729 31 H 0.146 0.854 32 H 0.441 0.559 33 H 0.209 0.791 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 9.741 -18.345 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.028 0.972 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.805 3.195 10 H -0.198 1.198 11 H -0.198 1.198 12 H -0.188 1.188 13 O -0.254 6.254 14 C 0.346 3.654 15 O -0.419 6.419 16 C -0.061 4.061 17 C -0.078 4.078 18 C -0.107 4.107 19 C 0.388 3.612 20 O -0.428 6.428 21 O -0.301 6.301 22 C -0.070 4.070 23 C -0.063 4.063 24 N -0.152 5.152 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.164 0.836 32 H 0.305 0.695 33 H 0.226 0.774 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -9.227 8.983 -17.496 21.724 hybrid contribution -0.665 0.483 0.982 1.280 sum -9.892 9.466 -16.515 21.452 Atomic orbital electron populations 1.21727 0.96358 1.00784 0.99952 1.21870 0.94396 0.97908 1.02511 1.20535 0.94885 0.89466 0.78343 0.97229 1.21296 0.90280 1.40146 1.07010 0.91729 1.25803 1.04349 0.93745 0.94236 1.70008 1.37486 1.37869 1.09805 0.85188 0.77523 0.78053 0.78687 1.19782 1.19848 1.18759 1.86628 1.34248 1.62060 1.42419 1.21261 0.80423 0.76378 0.87337 1.90784 1.56026 1.59507 1.35604 1.19808 0.93133 1.01198 0.91956 1.22050 0.94234 0.92081 0.99394 1.19386 0.94733 1.01417 0.95193 1.20328 0.84813 0.75484 0.80562 1.90950 1.54898 1.58936 1.38051 1.84438 1.45072 1.65022 1.35613 1.23340 0.91809 0.92893 0.98982 1.23880 0.95595 0.91629 0.95213 1.67565 1.33129 1.14960 0.99539 0.94997 0.94251 0.91688 0.89151 0.93557 0.91945 0.83573 0.69494 0.77449 0.76369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 8.56 71.98 0.62 -5.38 16 2 C -0.13 -6.73 5.49 30.59 0.17 -6.56 16 3 C 0.22 12.53 2.25 29.85 0.07 12.60 16 4 H 0.01 0.62 7.16 -2.39 -0.02 0.61 16 5 C -0.55 -32.21 8.90 25.60 0.23 -31.98 16 6 H 0.06 3.75 7.81 -2.91 -0.02 3.72 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -53.01 11.29 21.45 0.24 -52.77 16 9 Si 0.98 43.64 29.54 68.60 2.03 45.67 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 13 O -0.34 -17.56 9.62 -55.80 -0.54 -18.10 16 14 C 0.50 23.15 6.40 70.43 0.45 23.60 16 15 O -0.53 -26.33 13.50 20.07 0.27 -26.06 16 16 C 0.07 2.59 6.75 41.87 0.28 2.87 16 17 C -0.06 -1.68 9.20 22.90 0.21 -1.47 16 18 C -0.10 -2.00 5.91 -19.91 -0.12 -2.12 16 19 C 0.54 9.90 8.30 70.42 0.58 10.49 16 20 O -0.54 -14.23 17.23 20.06 0.35 -13.88 16 21 O -0.49 -3.94 12.78 -55.82 -0.71 -4.65 16 22 C -0.05 -0.65 9.71 22.73 0.22 -0.43 16 23 C 0.10 1.68 11.17 84.82 0.95 2.63 16 24 N -0.44 -13.46 10.09 -185.11 -1.87 -15.32 16 25 H 0.03 1.42 6.06 -2.39 -0.01 1.40 16 26 H 0.04 1.89 7.79 -2.39 -0.02 1.87 16 27 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.09 5.08 5.95 -2.39 -0.01 5.06 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.15 4.76 7.33 -2.91 -0.02 4.74 16 32 H 0.44 -0.26 9.11 -74.06 -0.67 -0.94 16 33 H 0.21 0.62 7.70 -2.91 -0.02 0.59 16 34 H 0.22 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -78.85 304.85 4.36 -74.49 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 0.48 Total: 4.89 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 4.11 Total: 5.73 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -1.63 Total: -68.09 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -0.63 Total: -62.69 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -78.85 4.36 -74.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.433 kcal (2) G-P(sol) polarization free energy of solvation -78.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds