Wall clock time and date at job start Tue Mar 31 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35639 * 116.99536 * 2 1 4 4 C 1.38708 * 120.15651 * 0.02562 * 3 2 1 5 5 C 1.38048 * 120.08894 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.79993 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46769 * 90.00195 * 6 5 4 8 8 C 1.34777 * 119.99828 * 179.72341 * 7 6 5 9 9 O 1.21693 * 120.00014 * 0.28042 * 8 7 6 10 10 C 1.46373 * 120.00147 * 180.27610 * 8 7 6 11 11 H 1.08002 * 120.00141 * 0.02562 * 10 8 7 12 12 C 1.40050 * 120.00087 * 179.97438 * 10 8 7 13 13 N 1.30674 * 120.00151 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99913 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46768 * 60.00340 * 14 12 10 16 16 H 1.48504 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47374 * 300.00617 * 14 12 10 18 18 C 1.38566 * 120.40415 * 0.26232 * 5 4 3 19 19 C 1.37766 * 120.30426 * 359.48131 * 18 5 4 20 20 C 1.39768 * 119.90484 * 0.51288 * 19 18 5 21 21 C 1.47399 * 120.19720 * 179.72457 * 20 19 18 22 22 O 1.21509 * 119.99580 * 180.02562 * 21 20 19 23 23 O 1.34756 * 120.00326 * 0.02562 * 21 20 19 24 24 H 1.09001 * 109.47256 * 299.99555 * 1 2 3 25 25 H 1.08997 * 109.47285 * 59.99991 * 1 2 3 26 26 H 1.09008 * 109.46690 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.95323 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.47210 * 330.00552 * 6 5 4 29 29 H 1.08994 * 109.47121 * 210.00522 * 6 5 4 30 30 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 31 31 H 0.96991 * 119.99824 * 179.97438 * 13 12 10 32 32 H 1.08003 * 119.84947 * 179.71906 * 18 5 4 33 33 H 1.08007 * 120.04397 * 180.23587 * 19 18 5 34 34 H 0.96695 * 116.99947 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2924 2.3739 0.0005 5 6 1.9204 3.6032 0.0011 6 6 1.0966 4.8651 0.0011 7 7 0.8293 5.2737 1.3823 8 6 0.1096 6.3862 1.6286 9 8 -0.3225 7.0486 0.7037 10 6 -0.1525 6.7978 3.0086 11 1 0.2312 6.2102 3.8295 12 6 -0.8999 7.9542 3.2646 13 7 -1.3638 8.6656 2.2714 14 14 -1.2349 8.4790 5.0258 15 1 0.0533 8.7228 5.7231 16 1 -2.0420 9.7256 5.0258 17 1 -1.9827 7.4056 5.7285 18 6 3.3037 3.6840 -0.0044 19 6 4.0671 2.5372 0.0003 20 6 3.4446 1.2858 -0.0001 21 6 4.2550 0.0546 -0.0012 22 8 3.7100 -1.0314 -0.0021 23 8 5.6003 0.1334 -0.0012 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 0.2137 2.3194 0.0005 28 1 0.1529 4.6830 -0.5131 29 1 1.6434 5.6559 -0.5124 30 1 1.1739 4.7459 2.1196 31 1 -1.8817 9.4662 2.4487 32 1 3.7858 4.6505 -0.0085 33 1 5.1450 2.6050 -0.0001 34 1 6.0889 -0.7011 -0.0015 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599409341.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:54 Heat of formation + Delta-G solvation = -142.527551 kcal Electronic energy + Delta-G solvation = -20788.461363 eV Core-core repulsion = 17265.684895 eV Total energy + Delta-G solvation = -3522.776468 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80014 -39.47651 -38.03095 -36.96919 -36.04213 -33.81305 -32.45612 -31.12914 -30.29539 -27.68415 -27.14543 -25.54665 -22.96933 -22.36962 -21.08588 -19.76256 -18.29966 -17.95978 -17.26348 -16.84826 -16.09844 -16.06543 -15.38701 -15.36757 -14.78288 -14.57095 -14.24484 -14.10960 -13.70941 -13.19088 -13.00306 -12.69555 -12.35799 -11.99057 -11.78898 -11.58913 -11.37590 -11.32613 -11.13082 -11.10528 -10.90783 -10.52708 -10.44916 -10.28947 -9.14643 -8.89161 -8.39524 -7.67886 -7.62338 -6.23671 -4.69769 0.60342 1.30712 2.50676 2.93836 3.07712 3.13314 3.18446 3.20256 3.63172 4.08311 4.52740 4.59086 4.68143 4.93315 4.99972 5.06284 5.07460 5.11125 5.29877 5.39924 5.45285 5.66756 5.72689 5.95792 6.09055 6.17335 6.26859 6.39435 6.56228 6.64573 7.18207 7.38792 7.83757 7.87138 7.97786 8.26087 8.97308 9.44006 10.53493 10.71354 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.026608 B = 0.003523 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.045588 B = 7945.648708 C = 8148.192030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.288 6.288 3 C 0.190 3.810 4 C -0.209 4.209 5 C -0.006 4.006 6 C 0.162 3.838 7 N -0.762 5.762 8 C 0.555 3.445 9 O -0.579 6.579 10 C -0.544 4.544 11 H 0.068 0.932 12 C 0.088 3.912 13 N -0.768 5.768 14 Si 0.909 3.091 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.268 1.268 18 C -0.157 4.157 19 C -0.025 4.025 20 C -0.175 4.175 21 C 0.528 3.472 22 O -0.503 6.503 23 O -0.517 6.517 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.141 0.859 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.382 0.618 31 H 0.270 0.730 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.179 -14.923 -3.545 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.199 6.199 3 C 0.142 3.858 4 C -0.228 4.228 5 C -0.007 4.007 6 C 0.038 3.962 7 N -0.419 5.419 8 C 0.359 3.641 9 O -0.462 6.462 10 C -0.581 4.581 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.396 5.396 14 Si 0.733 3.267 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.193 1.193 18 C -0.176 4.176 19 C -0.043 4.043 20 C -0.177 4.177 21 C 0.372 3.628 22 O -0.391 6.391 23 O -0.329 6.329 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.158 0.842 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.214 0.786 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 8.425 -14.382 -4.318 17.219 hybrid contribution 0.073 -0.437 1.211 1.289 sum 8.498 -14.819 -3.107 17.363 Atomic orbital electron populations 1.23211 0.78120 1.04274 1.01950 1.86285 1.21378 1.25522 1.86722 1.18970 0.90427 0.85031 0.91361 1.21195 1.00753 0.91012 1.09824 1.20337 0.94188 0.94960 0.91224 1.19938 0.97270 0.90876 0.88132 1.46204 1.60948 1.30645 1.04054 1.18258 0.77125 0.78091 0.90627 1.90609 1.54663 1.54478 1.46460 1.20834 1.36030 1.10425 0.90836 0.91397 1.25707 0.93795 0.95500 0.98218 1.70002 1.25444 1.12231 1.31938 0.86416 0.79010 0.78320 0.82905 1.19231 1.20528 1.19278 1.21072 0.93049 0.98961 1.04505 1.21281 1.00506 0.90030 0.92520 1.18291 0.89350 0.91936 1.18107 1.20604 0.80356 0.89117 0.72682 1.90922 1.72721 1.29752 1.45724 1.84563 1.20178 1.41788 1.86420 0.92025 0.92247 0.87976 0.84160 0.92070 0.91722 0.78632 0.91972 0.84583 0.83883 0.73127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.29 -3.99 8.57 -40.50 -0.35 -4.33 16 3 C 0.19 2.63 6.70 -38.67 -0.26 2.37 16 4 C -0.21 -2.84 8.67 -39.48 -0.34 -3.18 16 5 C -0.01 -0.09 5.25 -104.57 -0.55 -0.64 16 6 C 0.16 2.93 5.79 -5.19 -0.03 2.90 16 7 N -0.76 -16.33 5.54 -62.90 -0.35 -16.68 16 8 C 0.55 15.33 7.75 -12.99 -0.10 15.23 16 9 O -0.58 -18.30 15.02 5.20 0.08 -18.22 16 10 C -0.54 -15.04 9.54 -35.63 -0.34 -15.38 16 11 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 12 C 0.09 2.40 5.50 -17.36 -0.10 2.31 16 13 N -0.77 -22.63 11.83 55.55 0.66 -21.97 16 14 Si 0.91 19.78 29.56 -169.99 -5.02 14.75 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 18 C -0.16 -2.00 9.67 -39.63 -0.38 -2.38 16 19 C -0.03 -0.29 9.61 -39.18 -0.38 -0.67 16 20 C -0.17 -2.32 5.88 -104.86 -0.62 -2.94 16 21 C 0.53 6.85 8.26 34.46 0.28 7.14 16 22 O -0.50 -7.92 15.95 -26.60 -0.42 -8.34 16 23 O -0.52 -4.78 12.68 -40.64 -0.52 -5.29 16 24 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 25 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 26 H 0.10 0.80 8.14 -51.92 -0.42 0.37 16 27 H 0.14 1.77 6.30 -52.49 -0.33 1.43 16 28 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 30 H 0.38 7.35 8.44 -40.82 -0.34 7.00 16 31 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 32 H 0.14 1.59 8.06 -52.48 -0.42 1.16 16 33 H 0.14 1.34 7.61 -52.48 -0.40 0.94 16 34 H 0.41 1.90 9.11 45.56 0.42 2.31 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -36.58 308.20 -5.78 -42.36 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -2.69 Total: 7.13 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.82 Total: 5.95 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.31 Total: -38.65 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.21 Total: -36.19 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -36.58 -5.78 -42.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599409341.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.165 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds