Wall clock time and date at job start Tue Mar 31 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38501 * 120.01657 * 2 1 4 4 C 1.40157 * 117.81074 * 179.97438 * 3 2 1 5 5 C 1.47985 * 121.15330 * 180.02562 * 4 3 2 6 6 O 1.21567 * 119.99445 * 233.84598 * 5 4 3 7 7 N 1.34776 * 120.00010 * 53.84793 * 5 4 3 8 8 C 1.36795 * 119.99517 * 185.32589 * 7 5 4 9 9 H 1.08004 * 120.00090 * 323.78872 * 8 7 5 10 10 C 1.39101 * 119.99981 * 143.79016 * 8 7 5 11 11 N 1.31329 * 120.00070 * 162.11484 * 10 8 7 12 12 Si 1.86804 * 120.00088 * 342.12019 * 10 8 7 13 13 H 1.48498 * 109.47205 * 92.25900 * 12 10 8 14 14 H 1.48501 * 109.47001 * 212.26090 * 12 10 8 15 15 H 1.48503 * 109.46736 * 332.25913 * 12 10 8 16 16 C 1.46499 * 120.00154 * 5.31986 * 7 5 4 17 17 C 1.50692 * 109.46939 * 83.13450 * 16 7 5 18 18 O 1.20826 * 120.00253 * 359.97438 * 17 16 7 19 19 O 1.34230 * 120.00137 * 180.02562 * 17 16 7 20 20 C 1.39860 * 117.69137 * 359.97438 * 4 3 2 21 21 C 1.50699 * 120.18096 * 180.02562 * 20 4 3 22 22 N 1.31861 * 119.64225 * 0.27950 * 20 4 3 23 23 N 1.28279 * 122.34031 * 359.41986 * 22 20 4 24 24 H 1.09003 * 109.47077 * 89.99683 * 1 2 3 25 25 H 1.09001 * 109.47359 * 209.99900 * 1 2 3 26 26 H 1.09000 * 109.46956 * 329.99852 * 1 2 3 27 27 H 1.08003 * 121.09097 * 359.95791 * 3 2 1 28 28 H 0.96998 * 120.00134 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.46767 * 203.13276 * 16 7 5 30 30 H 1.09002 * 109.47092 * 323.13114 * 16 7 5 31 31 H 0.96697 * 117.00332 * 180.02562 * 19 17 16 32 32 H 1.08997 * 109.47399 * 84.47990 * 21 20 4 33 33 H 1.09003 * 109.47194 * 204.48181 * 21 20 4 34 34 H 1.09002 * 109.47098 * 324.47951 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1998 1.1993 0.0000 4 6 3.6003 1.1453 0.0006 5 6 4.4141 2.3813 0.0012 6 8 5.2674 2.5476 -0.8486 7 7 4.2091 3.3226 0.9437 8 6 4.8836 4.5111 0.8814 9 1 5.9051 4.5346 0.5315 10 6 4.2538 5.6893 1.2687 11 7 4.9687 6.7551 1.5476 12 14 2.3910 5.7558 1.3921 13 1 1.9747 5.4261 2.7789 14 1 1.9203 7.1208 1.0453 15 1 1.7972 4.7731 0.4502 16 6 3.2641 3.0730 2.0349 17 6 3.9480 2.2834 3.1210 18 8 5.1059 1.9616 2.9961 19 8 3.2706 1.9365 4.2267 20 6 4.2021 -0.1172 0.0016 21 6 5.7041 -0.2406 0.0028 22 7 3.4482 -1.1990 -0.0035 23 7 2.1667 -1.1424 0.0014 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6780 2.1448 -0.0007 28 1 4.5295 7.5768 1.8173 29 1 2.9177 4.0238 2.4402 30 1 2.4126 2.5078 1.6560 31 1 3.7517 1.4306 4.8957 32 1 6.0735 -0.1713 1.0259 33 1 5.9900 -1.2027 -0.4224 34 1 6.1351 0.5630 -0.5943 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600078085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:58 Heat of formation + Delta-G solvation = -45.166049 kcal Electronic energy + Delta-G solvation = -22633.639951 eV Core-core repulsion = 19147.378146 eV Total energy + Delta-G solvation = -3486.261805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21536 -40.01954 -38.62566 -35.94947 -35.23891 -34.28429 -33.41193 -32.25661 -29.80675 -28.35706 -26.70727 -26.02002 -24.01660 -22.53201 -21.95007 -19.65760 -17.99467 -17.65773 -17.38693 -16.89993 -16.29031 -16.10038 -15.42329 -15.22823 -15.07381 -14.42990 -13.82785 -13.64833 -13.40509 -13.23580 -13.00738 -12.77159 -12.66692 -12.49105 -12.32662 -12.16320 -11.91031 -11.28781 -11.20508 -10.83247 -10.80654 -10.31830 -10.16372 -9.98911 -9.84344 -9.37753 -9.29288 -8.91735 -8.22474 -6.66013 -4.27471 0.66007 0.95351 2.48643 2.73471 2.85708 2.92508 3.03399 3.36695 3.71380 3.79820 3.89627 4.04324 4.43877 4.55393 4.64682 4.84485 4.98878 5.10450 5.15043 5.34230 5.40367 5.42792 5.58559 5.67823 5.78206 5.82554 5.91902 6.12431 6.25791 6.51855 6.71307 7.15427 7.88405 8.10276 8.18400 8.58097 8.80702 8.94499 9.28224 10.44897 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017249 B = 0.007881 C = 0.007425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.937942 B = 3552.062136 C = 3770.247816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.057 3.943 3 C -0.106 4.106 4 C -0.101 4.101 5 C 0.520 3.480 6 O -0.528 6.528 7 N -0.432 5.432 8 C -0.319 4.319 9 H 0.117 0.883 10 C 0.061 3.939 11 N -0.847 5.847 12 Si 0.864 3.136 13 H -0.266 1.266 14 H -0.276 1.276 15 H -0.258 1.258 16 C 0.082 3.918 17 C 0.456 3.544 18 O -0.489 6.489 19 O -0.523 6.523 20 C 0.107 3.893 21 C -0.112 4.112 22 N -0.243 5.243 23 N -0.240 5.240 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.154 0.846 28 H 0.280 0.720 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.404 0.596 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 -8.576 2.431 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.115 4.115 5 C 0.307 3.693 6 O -0.407 6.407 7 N -0.153 5.153 8 C -0.445 4.445 9 H 0.135 0.865 10 C -0.147 4.147 11 N -0.482 5.482 12 Si 0.691 3.309 13 H -0.194 1.194 14 H -0.202 1.202 15 H -0.183 1.183 16 C -0.043 4.043 17 C 0.295 3.705 18 O -0.374 6.374 19 O -0.335 6.335 20 C -0.038 4.038 21 C -0.170 4.170 22 N -0.085 5.085 23 N -0.083 5.083 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.172 0.828 28 H 0.091 0.909 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.262 0.738 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.251 -9.765 1.698 13.558 hybrid contribution -0.633 1.563 0.780 1.858 sum -9.884 -8.202 2.478 13.081 Atomic orbital electron populations 1.20658 0.87276 1.04018 1.03621 1.22752 0.99007 0.90049 0.96917 1.22534 0.93428 1.00356 0.97240 1.21572 0.94713 0.96827 0.98432 1.17634 0.85876 0.82750 0.83025 1.90682 1.33681 1.77868 1.38491 1.43193 1.39183 1.15512 1.17379 1.19147 0.98899 0.80456 1.46042 0.86535 1.25410 0.98481 0.95131 0.95712 1.69648 1.36299 1.02671 1.39574 0.87192 0.85955 0.79262 0.78539 1.19385 1.20158 1.18262 1.21923 0.93754 1.01151 0.87488 1.24377 0.86155 0.77650 0.82281 1.90714 1.17530 1.50720 1.78416 1.84547 1.48693 1.69853 1.30405 1.23031 0.99429 0.88628 0.92689 1.20885 0.86979 1.04722 1.04411 1.72918 0.98942 1.26526 1.10151 1.72751 1.01858 1.24761 1.08930 0.89874 0.89900 0.90224 0.82800 0.90950 0.86351 0.87628 0.73787 0.89608 0.90214 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.19 36.00 0.37 -0.57 16 2 C 0.06 0.82 6.86 -82.46 -0.57 0.26 16 3 C -0.11 -1.68 7.54 -38.76 -0.29 -1.97 16 4 C -0.10 -1.92 4.98 -104.58 -0.52 -2.44 16 5 C 0.52 11.85 6.36 -12.27 -0.08 11.77 16 6 O -0.53 -13.59 15.08 5.31 0.08 -13.51 16 7 N -0.43 -10.01 1.79 -117.13 -0.21 -10.22 16 8 C -0.32 -8.52 9.46 -15.02 -0.14 -8.67 16 9 H 0.12 3.54 7.83 -52.48 -0.41 3.13 16 10 C 0.06 1.55 5.35 -17.45 -0.09 1.46 16 11 N -0.85 -22.94 13.95 55.50 0.77 -22.16 16 12 Si 0.86 17.85 24.78 -169.99 -4.21 13.64 16 13 H -0.27 -5.05 6.59 56.52 0.37 -4.68 16 14 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 15 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 16 C 0.08 1.60 4.27 -5.20 -0.02 1.57 16 17 C 0.46 8.61 8.30 36.00 0.30 8.91 16 18 O -0.49 -10.71 17.02 -18.75 -0.32 -11.02 16 19 O -0.52 -7.56 13.42 -39.26 -0.53 -8.09 16 20 C 0.11 1.98 6.91 -81.97 -0.57 1.42 16 21 C -0.11 -1.92 9.72 36.01 0.35 -1.57 16 22 N -0.24 -4.41 11.42 33.82 0.39 -4.02 16 23 N -0.24 -4.03 11.41 33.57 0.38 -3.64 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.15 2.12 7.27 -52.48 -0.38 1.73 16 28 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.12 2.32 3.02 -51.93 -0.16 2.17 16 30 H 0.11 1.72 4.51 -51.93 -0.23 1.48 16 31 H 0.40 3.98 9.10 45.56 0.41 4.39 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.94 6.05 -51.93 -0.31 1.62 16 LS Contribution 296.37 15.07 4.47 4.47 Total: -1.00 -32.48 296.37 -2.80 -35.28 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -2.36 Total: 9.11 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -1.27 Total: 10.17 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 1.33 Total: -40.05 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.77 Total: -32.62 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -4.21 Total: 13.64 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.48 -2.80 -35.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600078085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.887 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds