Wall clock time and date at job start Tue Mar 31 2020 01:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31688 * 119.64024 * 2 1 4 4 C 1.31857 * 121.96206 * 180.27510 * 3 2 1 5 5 C 1.38986 * 120.99405 * 0.02562 * 4 3 2 6 6 N 1.40011 * 120.41770 * 180.02562 * 5 4 3 7 7 C 1.34782 * 120.00117 * 214.80412 * 6 5 4 8 8 O 1.21590 * 119.99611 * 354.87563 * 7 6 5 9 9 N 1.34772 * 119.99991 * 174.87740 * 7 6 5 10 10 C 1.46503 * 119.99994 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.46875 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00708 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99511 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00051 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99937 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47243 * 59.99386 * 15 13 11 17 17 H 1.48497 * 109.46989 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46759 * 299.99764 * 15 13 11 19 19 C 1.38960 * 119.16698 * 0.02562 * 5 4 3 20 20 C 1.39593 * 119.64682 * 180.27539 * 2 1 3 21 21 C 1.47732 * 120.52770 * 359.70185 * 20 2 1 22 22 O 1.21478 * 120.00034 * 3.45823 * 21 20 2 23 23 O 1.34707 * 120.00045 * 183.46544 * 21 20 2 24 24 H 1.08994 * 109.47160 * 262.30993 * 1 2 3 25 25 H 1.08997 * 109.47366 * 22.31718 * 1 2 3 26 26 H 1.09005 * 109.46951 * 142.31433 * 1 2 3 27 27 H 1.08002 * 119.50321 * 179.97438 * 4 3 2 28 28 H 0.97001 * 120.00143 * 34.79989 * 6 5 4 29 29 H 0.97004 * 119.99936 * 0.02562 * 9 7 6 30 30 H 1.08996 * 109.47003 * 300.00704 * 10 9 7 31 31 H 1.09001 * 109.46948 * 60.00324 * 10 9 7 32 32 H 0.97004 * 119.99949 * 180.02562 * 14 13 11 33 33 H 1.08010 * 120.89003 * 180.02562 * 19 5 4 34 34 H 0.96700 * 116.99894 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1582 1.1446 0.0000 4 6 3.4757 1.1980 -0.0054 5 6 4.2391 0.0366 -0.0118 6 7 5.6374 0.1073 -0.0170 7 6 6.3564 -0.8137 -0.6888 8 8 5.7971 -1.7581 -1.2121 9 7 7.6951 -0.6880 -0.7804 10 6 8.4767 -1.6895 -1.5101 11 6 9.9367 -1.3193 -1.4627 12 1 10.2512 -0.4277 -0.9409 13 6 10.8712 -2.1193 -2.0856 14 7 10.4884 -3.2054 -2.7207 15 14 12.6811 -1.6610 -2.0263 16 1 13.1339 -1.6143 -0.6128 17 1 13.4733 -2.6761 -2.7661 18 1 12.8750 -0.3285 -2.6524 19 6 3.5971 -1.1958 -0.0132 20 6 2.1975 -1.2132 -0.0058 21 6 1.4627 -2.4948 -0.0054 22 8 0.2493 -2.4994 -0.0634 23 8 2.1383 -3.6585 0.0595 24 1 -0.3633 -0.1375 1.0184 25 1 -0.3634 0.9506 -0.3902 26 1 -0.3633 -0.8133 -0.6283 27 1 3.9691 2.1587 -0.0056 28 1 6.0888 0.8193 0.4629 29 1 8.1412 0.0652 -0.3625 30 1 8.3348 -2.6672 -1.0497 31 1 8.1439 -1.7247 -2.5475 32 1 11.1459 -3.7684 -3.1586 33 1 4.1629 -2.1159 -0.0177 34 1 1.6141 -4.4711 0.0574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600742484.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:15 Heat of formation + Delta-G solvation = -81.136121 kcal Electronic energy + Delta-G solvation = -20775.985170 eV Core-core repulsion = 17288.163586 eV Total energy + Delta-G solvation = -3487.821584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16930 -40.01210 -39.02622 -36.34396 -35.23751 -34.29719 -32.71693 -32.52052 -31.44819 -27.96658 -26.65227 -25.24369 -23.19521 -22.60631 -21.49880 -20.38904 -18.80518 -18.09717 -17.77657 -16.53856 -16.37569 -16.00977 -15.88673 -15.76983 -14.94782 -14.79933 -14.27374 -14.11427 -13.50388 -13.33943 -13.17113 -12.81431 -12.58137 -12.22219 -12.07220 -12.01268 -11.66439 -11.06114 -10.97446 -10.67944 -10.56833 -10.39274 -9.95301 -9.89859 -9.49712 -9.39028 -8.84522 -8.38278 -7.92531 -6.23712 -4.31399 0.36429 1.10502 2.37268 2.82212 2.91083 3.20775 3.26342 3.27624 3.44075 3.75353 4.16580 4.25232 4.49092 4.66974 4.76610 4.89868 5.06575 5.12679 5.37305 5.60131 5.68390 5.70183 5.90571 6.12192 6.15430 6.47109 6.72192 6.82234 7.25153 7.37659 7.42357 7.68852 7.70797 7.76061 7.89419 8.54983 8.71824 9.01803 9.35379 10.86274 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032536 B = 0.003398 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.380640 B = 8238.348163 C = 8975.659112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.167 3.833 3 N -0.471 5.471 4 C 0.108 3.892 5 C 0.111 3.889 6 N -0.689 5.689 7 C 0.689 3.311 8 O -0.581 6.581 9 N -0.717 5.717 10 C 0.265 3.735 11 C -0.547 4.547 12 H 0.063 0.937 13 C 0.065 3.935 14 N -0.884 5.884 15 Si 0.906 3.094 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.019 4.019 20 C -0.169 4.169 21 C 0.538 3.462 22 O -0.511 6.511 23 O -0.504 6.504 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.165 0.835 28 H 0.408 0.592 29 H 0.390 0.610 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.268 0.732 33 H 0.171 0.829 34 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.782 6.370 7.781 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.028 3.972 3 N -0.180 5.180 4 C -0.052 4.052 5 C 0.012 3.988 6 N -0.339 5.339 7 C 0.389 3.611 8 O -0.459 6.459 9 N -0.368 5.368 10 C 0.145 3.855 11 C -0.585 4.585 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.521 5.521 15 Si 0.733 3.267 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.047 4.047 20 C -0.173 4.173 21 C 0.382 3.618 22 O -0.401 6.401 23 O -0.315 6.315 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.182 0.818 28 H 0.244 0.756 29 H 0.223 0.777 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.188 0.812 34 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -15.616 6.416 7.111 18.319 hybrid contribution 1.830 -0.398 0.358 1.906 sum -13.787 6.018 7.469 16.795 Atomic orbital electron populations 1.21103 0.87565 1.04308 1.04008 1.21389 0.97495 0.86318 0.92041 1.67656 1.08646 1.27777 1.13930 1.22876 0.89271 0.97444 0.95655 1.18479 0.83959 0.94316 1.02063 1.42701 1.03311 1.32788 1.55053 1.16190 0.82824 0.82420 0.79622 1.90893 1.70112 1.32506 1.52408 1.45794 1.03630 1.30171 1.57250 1.19093 0.88721 0.86171 0.91537 1.21150 0.90891 1.10376 1.36076 0.91875 1.24942 0.99603 0.94670 0.94700 1.69961 1.34887 1.13662 1.33592 0.86445 0.83708 0.78277 0.78309 1.20040 1.21023 1.20035 1.22257 0.92572 0.99745 0.90092 1.19798 0.93759 0.91616 1.12129 1.20564 0.85172 0.84194 0.71824 1.90808 1.14804 1.87723 1.46813 1.84641 1.44860 1.16807 1.85152 0.90245 0.90947 0.87770 0.81786 0.75626 0.77726 0.95355 0.95385 0.92271 0.81194 0.72647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.99 36.00 0.32 -0.91 16 2 C 0.17 2.18 6.82 -82.15 -0.56 1.62 16 3 N -0.47 -6.06 10.25 -8.99 -0.09 -6.15 16 4 C 0.11 1.25 11.11 -17.26 -0.19 1.06 16 5 C 0.11 1.51 6.32 -83.58 -0.53 0.98 16 6 N -0.69 -9.27 5.36 -14.15 -0.08 -9.35 16 7 C 0.69 12.91 8.42 -86.92 -0.73 12.18 16 8 O -0.58 -13.19 13.79 5.29 0.07 -13.12 16 9 N -0.72 -13.98 5.55 -66.41 -0.37 -14.35 16 10 C 0.27 6.70 5.43 -5.19 -0.03 6.67 16 11 C -0.55 -14.21 9.28 -34.44 -0.32 -14.53 16 12 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 13 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.88 -25.32 13.29 55.43 0.74 -24.59 16 15 Si 0.91 20.22 29.54 -169.99 -5.02 15.19 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 C -0.02 -0.28 8.37 -38.66 -0.32 -0.60 16 20 C -0.17 -2.33 5.89 -104.86 -0.62 -2.95 16 21 C 0.54 6.97 8.25 34.61 0.29 7.25 16 22 O -0.51 -6.91 14.04 -19.25 -0.27 -7.18 16 23 O -0.50 -5.66 12.76 -40.51 -0.52 -6.17 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.10 1.22 5.64 -51.93 -0.29 0.93 16 27 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.41 3.86 8.84 -40.82 -0.36 3.50 16 29 H 0.39 6.29 8.34 -40.82 -0.34 5.95 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.17 2.92 5.93 -52.48 -0.31 2.61 16 34 H 0.41 2.50 9.11 45.56 0.42 2.91 16 LS Contribution 304.62 15.07 4.59 4.59 Total: -1.00 -33.38 304.62 -6.27 -39.65 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -2.54 Total: 9.05 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: -2.79 Total: 12.42 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.20 Total: -54.43 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.71 Total: -26.47 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.38 -6.27 -39.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600742484.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.484 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds