Wall clock time and date at job start Tue Mar 31 2020 01:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48497 * 109.47370 * 266.33521 * 3 2 1 5 5 H 1.48509 * 109.47084 * 26.33489 * 3 2 1 6 6 H 1.48502 * 109.47089 * 146.33090 * 3 2 1 7 7 C 1.37871 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99882 * 353.62257 * 7 2 1 9 9 C 1.50695 * 120.00386 * 173.62436 * 7 2 1 10 10 O 1.42907 * 110.62423 * 324.07440 * 9 7 2 11 11 C 1.55140 * 110.85889 * 200.86781 * 9 7 2 12 12 C 1.54909 * 101.65052 * 205.88985 * 11 9 7 13 13 N 1.47845 * 104.79809 * 37.06965 * 12 11 9 14 14 C 1.38565 * 110.99992 * 213.63326 * 13 12 11 15 15 C 1.39842 * 120.50129 * 301.11634 * 14 13 12 16 16 C 1.38301 * 118.44149 * 180.19634 * 15 14 13 17 17 N 1.32326 * 119.26798 * 359.53198 * 16 15 14 18 18 C 1.32422 * 120.96197 * 0.25381 * 17 16 15 19 19 C 1.48470 * 119.14770 * 180.02562 * 18 17 16 20 20 O 1.21387 * 119.99950 * 179.97438 * 19 18 17 21 21 O 1.34630 * 120.00443 * 359.97438 * 19 18 17 22 22 N 1.32486 * 121.70168 * 359.97438 * 18 17 16 23 23 C 1.47448 * 108.56546 * 335.90269 * 13 12 11 24 24 H 0.97002 * 120.00210 * 0.02562 * 1 2 3 25 25 H 0.96703 * 113.99980 * 297.76280 * 10 9 7 26 26 H 1.08999 * 110.98939 * 323.97958 * 11 9 7 27 27 H 1.08999 * 110.99218 * 87.76347 * 11 9 7 28 28 H 1.08997 * 110.37406 * 278.23428 * 12 11 9 29 29 H 1.09005 * 110.36914 * 155.89363 * 12 11 9 30 30 H 1.08003 * 120.77996 * 359.97438 * 15 14 13 31 31 H 1.08005 * 120.36543 * 179.80538 * 16 15 14 32 32 H 0.96699 * 117.00470 * 180.02562 * 21 19 18 33 33 H 1.09002 * 109.88534 * 120.39548 * 23 13 12 34 34 H 1.08998 * 109.88755 * 241.58110 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5742 2.0017 -1.3972 5 1 1.4100 2.6738 0.6211 6 1 3.5058 1.4638 0.7762 7 6 2.0046 -1.1940 0.0005 8 1 1.4695 -2.1264 0.1049 9 6 3.5045 -1.1982 -0.1444 10 8 3.9273 -0.1622 -1.0333 11 6 4.0082 -2.5811 -0.6349 12 6 5.4549 -2.6014 -0.0814 13 7 5.3653 -1.9332 1.2343 14 6 6.5211 -1.2199 1.5088 15 6 7.7603 -1.8666 1.5542 16 6 8.8859 -1.1141 1.8360 17 7 8.7594 0.1867 2.0433 18 6 7.5732 0.7729 1.9895 19 6 7.4777 2.2352 2.2281 20 8 6.3983 2.7885 2.1820 21 8 8.5883 2.9476 2.4955 22 7 6.4696 0.0884 1.7272 23 6 4.1861 -1.0480 1.2319 24 1 -0.4850 0.8400 -0.0004 25 1 3.5921 -0.2569 -1.9354 26 1 3.4144 -3.3878 -0.2051 27 1 4.0053 -2.6341 -1.7236 28 1 6.1221 -2.0490 -0.7430 29 1 5.8014 -3.6281 0.0373 30 1 7.8360 -2.9293 1.3770 31 1 9.8582 -1.5822 1.8819 32 1 8.4761 3.8965 2.6442 33 1 3.4967 -1.3466 2.0217 34 1 4.4982 -0.0143 1.3804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:11 Heat of formation + Delta-G solvation = -53.394894 kcal Electronic energy + Delta-G solvation = -22248.913302 eV Core-core repulsion = 18762.294667 eV Total energy + Delta-G solvation = -3486.618634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45701 -39.92412 -38.76301 -36.19143 -35.67774 -33.38184 -32.38102 -32.16267 -29.47312 -28.66127 -26.18784 -24.97660 -23.42680 -22.26045 -21.05227 -19.85561 -18.44365 -17.94117 -17.34423 -17.10634 -16.33724 -16.05513 -15.42549 -15.16290 -15.05287 -14.60151 -14.51516 -13.68155 -13.53265 -13.38427 -12.73000 -12.50913 -12.01281 -11.87479 -11.63550 -11.54110 -11.27472 -10.96676 -10.79604 -10.63157 -10.53928 -10.26781 -10.17100 -9.86756 -9.31677 -9.12095 -8.60201 -8.50415 -8.21738 -6.16140 -4.28860 0.33365 1.06028 2.28757 2.39688 3.54749 3.58147 3.64462 3.81061 3.85462 4.02803 4.47972 4.57093 4.77102 4.92536 5.03392 5.09724 5.19419 5.27354 5.41383 5.49994 5.68550 5.78890 6.06708 6.17297 6.27982 6.46923 6.53969 6.66428 6.74549 7.07024 7.14253 7.27817 7.50430 7.68289 8.02523 8.16105 8.67340 8.84917 9.46252 10.92192 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.007373 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.077846 B = 3796.507871 C = 5019.390406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.078 3.922 3 Si 0.929 3.071 4 H -0.292 1.292 5 H -0.323 1.323 6 H -0.253 1.253 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.211 3.789 10 O -0.565 6.565 11 C -0.144 4.144 12 C 0.054 3.946 13 N -0.467 5.467 14 C 0.364 3.636 15 C -0.218 4.218 16 C 0.152 3.848 17 N -0.500 5.500 18 C 0.320 3.680 19 C 0.552 3.448 20 O -0.467 6.467 21 O -0.493 6.493 22 N -0.492 5.492 23 C 0.029 3.971 24 H 0.266 0.734 25 H 0.370 0.630 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.177 0.823 32 H 0.416 0.584 33 H 0.098 0.902 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.109 -2.653 1.627 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.763 3.237 4 H -0.219 1.219 5 H -0.253 1.253 6 H -0.178 1.178 7 C -0.590 4.590 8 H 0.098 0.902 9 C 0.171 3.829 10 O -0.372 6.372 11 C -0.182 4.182 12 C -0.071 4.071 13 N -0.184 5.184 14 C 0.123 3.877 15 C -0.244 4.244 16 C -0.012 4.012 17 N -0.220 5.220 18 C 0.050 3.950 19 C 0.390 3.610 20 O -0.349 6.349 21 O -0.303 6.303 22 N -0.215 5.215 23 C -0.096 4.096 24 H 0.076 0.924 25 H 0.217 0.783 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.172 0.828 31 H 0.194 0.806 32 H 0.275 0.725 33 H 0.116 0.884 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.768 -2.042 2.622 18.077 hybrid contribution 0.005 0.724 -0.948 1.193 sum 17.773 -1.318 1.675 17.900 Atomic orbital electron populations 1.69964 1.06830 1.27806 1.47691 1.25100 0.94839 1.00424 0.92370 0.86034 0.79083 0.80226 0.78359 1.21934 1.25347 1.17761 1.21162 0.88470 0.95259 1.54100 0.90184 1.20261 0.94282 0.82477 0.85886 1.86213 1.76298 1.50995 1.23697 1.23344 0.93057 1.01388 1.00410 1.23125 0.99898 0.98278 0.85831 1.60672 1.01411 1.26874 1.29427 1.20394 0.91600 0.86466 0.89248 1.22693 0.92798 1.03219 1.05667 1.23083 0.99104 0.88499 0.90467 1.68359 1.25864 1.12321 1.15453 1.21013 0.84980 0.92652 0.96367 1.19677 0.81638 0.85681 0.74054 1.90994 1.29082 1.70412 1.44418 1.84596 1.36411 1.26951 1.82346 1.68082 1.31245 1.07527 1.14603 1.23777 0.88038 0.98111 0.99639 0.92435 0.78283 0.89858 0.90809 0.92747 0.89965 0.82762 0.80629 0.72515 0.88427 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 2 C 0.08 2.23 5.46 -17.82 -0.10 2.13 16 3 Si 0.93 24.62 24.90 -169.99 -4.23 20.39 16 4 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.32 -8.80 7.11 56.52 0.40 -8.40 16 6 H -0.25 -6.92 5.18 56.52 0.29 -6.62 16 7 C -0.55 -14.79 8.70 -34.45 -0.30 -15.09 16 8 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 9 C 0.21 4.71 0.68 -89.95 -0.06 4.65 16 10 O -0.56 -12.65 8.88 -35.23 -0.31 -12.96 16 11 C -0.14 -2.54 6.23 -24.59 -0.15 -2.70 16 12 C 0.05 0.82 6.12 -2.30 -0.01 0.81 16 13 N -0.47 -8.38 5.20 -169.80 -0.88 -9.26 16 14 C 0.36 6.21 6.16 -154.88 -0.95 5.26 16 15 C -0.22 -2.69 9.48 -38.96 -0.37 -3.06 16 16 C 0.15 1.72 11.29 -17.32 -0.20 1.52 16 17 N -0.50 -7.29 10.15 -11.22 -0.11 -7.40 16 18 C 0.32 5.54 7.59 -157.11 -1.19 4.35 16 19 C 0.55 9.08 8.36 34.95 0.29 9.38 16 20 O -0.47 -9.29 17.65 -19.18 -0.34 -9.63 16 21 O -0.49 -5.80 13.22 -40.30 -0.53 -6.33 16 22 N -0.49 -9.62 7.79 -10.37 -0.08 -9.70 16 23 C 0.03 0.65 5.55 -2.83 -0.02 0.63 16 24 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.37 7.23 9.06 45.56 0.41 7.64 16 26 H 0.08 1.49 7.99 -51.93 -0.42 1.07 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.05 0.82 7.78 -51.93 -0.40 0.42 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.15 1.40 8.02 -52.48 -0.42 0.98 16 31 H 0.18 1.17 8.06 -52.48 -0.42 0.74 16 32 H 0.42 2.63 9.11 45.56 0.42 3.04 16 33 H 0.10 2.25 7.82 -51.93 -0.41 1.84 16 34 H 0.11 2.69 4.10 -51.93 -0.21 2.48 16 LS Contribution 291.31 15.07 4.39 4.39 Total: -1.00 -35.79 291.31 -6.35 -42.15 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -1.96 Total: 6.54 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -3.06 Total: 7.87 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.30 Total: -52.41 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.18 Total: -28.92 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -4.23 Total: 20.39 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.79 -6.35 -42.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.249 kcal (2) G-P(sol) polarization free energy of solvation -35.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds