Wall clock time and date at job start Tue Mar 31 2020 01:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48497 * 109.47370 * 266.33521 * 3 2 1 5 5 H 1.48509 * 109.47084 * 26.33489 * 3 2 1 6 6 H 1.48502 * 109.47089 * 146.33090 * 3 2 1 7 7 C 1.37871 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99882 * 353.62257 * 7 2 1 9 9 C 1.50695 * 120.00386 * 173.62436 * 7 2 1 10 10 O 1.42907 * 110.62423 * 324.07440 * 9 7 2 11 11 C 1.55140 * 110.85889 * 200.86781 * 9 7 2 12 12 C 1.54909 * 101.65052 * 205.88985 * 11 9 7 13 13 N 1.47845 * 104.79809 * 37.06965 * 12 11 9 14 14 C 1.38565 * 110.99992 * 213.63326 * 13 12 11 15 15 C 1.39842 * 120.50129 * 301.11634 * 14 13 12 16 16 C 1.38301 * 118.44149 * 180.19634 * 15 14 13 17 17 N 1.32326 * 119.26798 * 359.53198 * 16 15 14 18 18 C 1.32422 * 120.96197 * 0.25381 * 17 16 15 19 19 C 1.48470 * 119.14770 * 180.02562 * 18 17 16 20 20 O 1.21387 * 119.99950 * 179.97438 * 19 18 17 21 21 O 1.34630 * 120.00443 * 359.97438 * 19 18 17 22 22 N 1.32486 * 121.70168 * 359.97438 * 18 17 16 23 23 C 1.47448 * 108.56546 * 335.90269 * 13 12 11 24 24 H 0.97002 * 120.00210 * 0.02562 * 1 2 3 25 25 H 0.96703 * 113.99980 * 297.76280 * 10 9 7 26 26 H 1.08999 * 110.98939 * 323.97958 * 11 9 7 27 27 H 1.08999 * 110.99218 * 87.76347 * 11 9 7 28 28 H 1.08997 * 110.37406 * 278.23428 * 12 11 9 29 29 H 1.09005 * 110.36914 * 155.89363 * 12 11 9 30 30 H 1.08003 * 120.77996 * 359.97438 * 15 14 13 31 31 H 1.08005 * 120.36543 * 179.80538 * 16 15 14 32 32 H 0.96699 * 117.00470 * 180.02562 * 21 19 18 33 33 H 1.09002 * 109.88534 * 120.39548 * 23 13 12 34 34 H 1.08998 * 109.88755 * 241.58110 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5742 2.0017 -1.3972 5 1 1.4100 2.6738 0.6211 6 1 3.5058 1.4638 0.7762 7 6 2.0046 -1.1940 0.0005 8 1 1.4695 -2.1264 0.1049 9 6 3.5045 -1.1982 -0.1444 10 8 3.9273 -0.1622 -1.0333 11 6 4.0082 -2.5811 -0.6349 12 6 5.4549 -2.6014 -0.0814 13 7 5.3653 -1.9332 1.2343 14 6 6.5211 -1.2199 1.5088 15 6 7.7603 -1.8666 1.5542 16 6 8.8859 -1.1141 1.8360 17 7 8.7594 0.1867 2.0433 18 6 7.5732 0.7729 1.9895 19 6 7.4777 2.2352 2.2281 20 8 6.3983 2.7885 2.1820 21 8 8.5883 2.9476 2.4955 22 7 6.4696 0.0884 1.7272 23 6 4.1861 -1.0480 1.2319 24 1 -0.4850 0.8400 -0.0004 25 1 3.5921 -0.2569 -1.9354 26 1 3.4144 -3.3878 -0.2051 27 1 4.0053 -2.6341 -1.7236 28 1 6.1221 -2.0490 -0.7430 29 1 5.8014 -3.6281 0.0373 30 1 7.8360 -2.9293 1.3770 31 1 9.8582 -1.5822 1.8819 32 1 8.4761 3.8965 2.6442 33 1 3.4967 -1.3466 2.0217 34 1 4.4982 -0.0143 1.3804 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062665.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:10 Heat of formation + Delta-G solvation = -84.512671 kcal Electronic energy + Delta-G solvation = -22250.262670 eV Core-core repulsion = 18762.294667 eV Total energy + Delta-G solvation = -3487.968003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.63064 -41.16803 -40.17706 -37.35740 -37.24332 -34.59884 -34.49594 -33.45790 -30.87353 -30.26376 -27.51670 -26.63195 -24.78076 -23.42584 -22.35892 -21.55809 -19.70516 -19.40665 -18.99726 -18.34027 -17.57309 -17.26343 -17.10902 -16.67624 -16.44023 -15.95298 -15.78410 -15.22687 -14.97841 -14.62138 -14.52638 -14.10224 -13.77997 -13.53659 -13.09413 -12.77357 -12.66422 -12.52233 -12.43670 -12.25620 -12.07083 -11.90530 -11.79374 -11.25118 -11.02520 -10.70569 -10.47824 -10.33159 -9.57781 -8.41238 -6.50973 -0.79561 -0.00856 1.12422 1.31859 1.37191 1.45983 1.69589 2.36493 2.40022 2.67226 2.92221 2.99044 3.35248 3.45876 3.70001 3.87380 4.02120 4.14656 4.24039 4.29472 4.45065 4.48965 4.73337 4.94593 4.96793 5.15152 5.19519 5.25559 5.32241 5.40381 5.53367 5.88294 5.95738 6.03608 6.56692 6.64409 6.91834 6.97521 7.28393 8.71464 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.007373 C = 0.005577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.077846 B = 3796.507871 C = 5019.390406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.282 1.282 5 H -0.338 1.338 6 H -0.269 1.269 7 C -0.539 4.539 8 H 0.054 0.946 9 C 0.203 3.797 10 O -0.571 6.571 11 C -0.136 4.136 12 C 0.060 3.940 13 N -0.467 5.467 14 C 0.330 3.670 15 C -0.188 4.188 16 C 0.161 3.839 17 N -0.497 5.497 18 C 0.294 3.706 19 C 0.558 3.442 20 O -0.518 6.518 21 O -0.475 6.475 22 N -0.540 5.540 23 C 0.038 3.962 24 H 0.266 0.734 25 H 0.381 0.619 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.199 0.801 31 H 0.234 0.766 32 H 0.439 0.561 33 H 0.072 0.928 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.096 -4.583 1.065 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.163 4.163 3 Si 0.817 3.183 4 H -0.208 1.208 5 H -0.270 1.270 6 H -0.195 1.195 7 C -0.577 4.577 8 H 0.072 0.928 9 C 0.162 3.838 10 O -0.380 6.380 11 C -0.174 4.174 12 C -0.064 4.064 13 N -0.183 5.183 14 C 0.090 3.910 15 C -0.213 4.213 16 C -0.002 4.002 17 N -0.217 5.217 18 C 0.024 3.976 19 C 0.397 3.603 20 O -0.404 6.404 21 O -0.288 6.288 22 N -0.263 5.263 23 C -0.089 4.089 24 H 0.075 0.925 25 H 0.230 0.770 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.216 0.784 31 H 0.250 0.750 32 H 0.302 0.698 33 H 0.091 0.909 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.820 -3.964 2.048 22.271 hybrid contribution -1.065 1.250 -0.733 1.798 sum 20.755 -2.714 1.315 20.973 Atomic orbital electron populations 1.70049 1.07955 1.28164 1.50765 1.25611 0.95089 1.02567 0.93071 0.85194 0.77055 0.77843 0.78232 1.20839 1.27005 1.19466 1.21502 0.91235 0.93603 1.51394 0.92790 1.20242 0.91512 0.85362 0.86680 1.86171 1.75960 1.51368 1.24503 1.23228 0.94715 0.97670 1.01807 1.23271 0.97966 1.00568 0.84640 1.60761 1.00467 1.26068 1.31047 1.20745 0.92862 0.86300 0.91088 1.23138 0.90592 1.05080 1.02453 1.24077 1.01083 0.87105 0.87962 1.68437 1.24273 1.14157 1.14792 1.21063 0.85434 0.92971 0.98132 1.19819 0.81644 0.85997 0.72863 1.90966 1.30955 1.71387 1.47046 1.84547 1.34217 1.28801 1.81208 1.67924 1.33058 1.09400 1.15918 1.23262 0.89596 0.97619 0.98425 0.92522 0.77002 0.90169 0.88766 0.92149 0.85350 0.78435 0.74972 0.69823 0.90948 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.17 13.96 21.45 0.30 -57.88 16 2 C 0.04 2.18 5.46 84.65 0.46 2.64 16 3 Si 0.98 52.99 24.90 68.60 1.71 54.69 16 4 H -0.28 -14.47 7.11 99.48 0.71 -13.76 16 5 H -0.34 -18.84 7.11 99.48 0.71 -18.14 16 6 H -0.27 -15.23 5.18 99.48 0.52 -14.71 16 7 C -0.54 -29.55 8.70 25.60 0.22 -29.33 16 8 H 0.05 3.20 7.99 -2.91 -0.02 3.18 16 9 C 0.20 9.00 0.68 -10.36 -0.01 8.99 16 10 O -0.57 -25.31 8.88 -148.98 -1.32 -26.63 16 11 C -0.14 -4.51 6.23 31.98 0.20 -4.31 16 12 C 0.06 1.59 6.12 86.77 0.53 2.12 16 13 N -0.47 -15.82 5.20 -691.13 -3.60 -19.41 16 14 C 0.33 10.50 6.16 133.28 0.82 11.32 16 15 C -0.19 -3.67 9.48 22.67 0.22 -3.46 16 16 C 0.16 2.76 11.29 84.63 0.96 3.72 16 17 N -0.50 -12.90 10.15 -189.41 -1.92 -14.82 16 18 C 0.29 9.89 7.59 137.67 1.05 10.94 16 19 C 0.56 18.38 8.36 70.55 0.59 18.97 16 20 O -0.52 -21.39 17.65 20.20 0.36 -21.04 16 21 O -0.48 -10.55 13.22 -55.38 -0.73 -11.28 16 22 N -0.54 -20.95 7.79 -186.71 -1.45 -22.41 16 23 C 0.04 1.69 5.55 86.64 0.48 2.18 16 24 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.38 14.51 9.06 -74.06 -0.67 13.84 16 26 H 0.08 2.71 7.99 -2.39 -0.02 2.70 16 27 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.06 1.56 7.78 -2.39 -0.02 1.54 16 29 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.20 2.10 8.02 -2.91 -0.02 2.08 16 31 H 0.23 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.44 4.94 9.11 -74.06 -0.67 4.26 16 33 H 0.07 3.49 7.82 -2.39 -0.02 3.47 16 34 H 0.08 4.16 4.10 -2.39 -0.01 4.15 16 Total: -1.00 -83.52 291.31 -1.51 -85.03 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -0.36 Total: 9.96 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 5.52 Total: 23.78 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -6.68 Total: -114.51 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -1.70 Total: -58.95 kcal Atomic # 14 Polarization: 52.99 SS G_CDS: 1.71 Total: 54.69 kcal Total: -83.52 -1.51 -85.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062665.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.517 kcal (2) G-P(sol) polarization free energy of solvation -83.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds