Wall clock time and date at job start Tue Mar 31 2020 01:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99485 * 2 1 4 4 H 1.48509 * 109.46740 * 239.99679 * 3 2 1 5 5 H 1.48494 * 109.47648 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47306 * 120.00389 * 3 2 1 7 7 C 1.37867 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00326 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00341 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.64259 * 56.84372 * 9 7 2 11 11 C 1.54591 * 110.72503 * 179.97438 * 9 7 2 12 12 C 1.53996 * 105.13656 * 140.49476 * 11 9 7 13 13 N 1.47906 * 107.06117 * 1.22236 * 12 11 9 14 14 C 1.38425 * 111.00271 * 214.15580 * 13 12 11 15 15 N 1.32595 * 119.13761 * 239.87307 * 14 13 12 16 16 C 1.32102 * 120.96782 * 179.97438 * 15 14 13 17 17 C 1.38827 * 119.24567 * 359.97438 * 16 15 14 18 18 C 1.39502 * 118.41735 * 359.97438 * 17 16 15 19 19 C 1.48382 * 120.50357 * 180.02562 * 18 17 16 20 20 O 1.21386 * 120.00396 * 0.02562 * 19 18 17 21 21 O 1.34646 * 119.99537 * 179.97438 * 19 18 17 22 22 N 1.32250 * 119.13460 * 59.60246 * 14 13 12 23 23 C 1.48534 * 105.81681 * 334.67510 * 13 12 11 24 24 H 0.97005 * 120.00299 * 0.02562 * 1 2 3 25 25 H 0.96699 * 114.00026 * 303.16275 * 10 9 7 26 26 H 1.08993 * 110.31013 * 21.58400 * 11 9 7 27 27 H 1.08993 * 110.30896 * 259.40387 * 11 9 7 28 28 H 1.09003 * 109.91856 * 241.87410 * 12 11 9 29 29 H 1.08997 * 110.08243 * 120.66823 * 12 11 9 30 30 H 1.08003 * 120.37712 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.79341 * 180.02562 * 17 16 15 32 32 H 0.96699 * 117.00424 * 179.97438 * 21 19 18 33 33 H 1.09004 * 110.66939 * 157.64184 * 23 13 12 34 34 H 1.09002 * 110.66619 * 280.76580 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.3663 -2.5701 -1.1193 11 6 2.2299 -3.6958 0.0005 12 6 1.5967 -4.7332 0.9462 13 7 0.3190 -4.1617 1.4242 14 6 0.0592 -4.5487 2.7277 15 7 -1.0452 -5.2339 2.9898 16 6 -1.3285 -5.6218 4.2204 17 6 -0.4529 -5.3048 5.2500 18 6 0.7010 -4.5839 4.9418 19 6 1.6689 -4.2207 6.0062 20 8 1.4599 -4.5515 7.1553 21 8 2.7796 -3.5252 5.6973 22 7 0.9219 -4.2298 3.6780 23 6 0.4733 -2.6876 1.3271 24 1 -0.4851 0.8401 -0.0004 25 1 -0.2682 -1.8419 -1.1660 26 1 3.2051 -3.3868 0.3766 27 1 2.3239 -4.1076 -1.0042 28 1 2.2596 -4.9187 1.7913 29 1 1.4098 -5.6635 0.4099 30 1 -2.2311 -6.1792 4.4232 31 1 -0.6596 -5.6097 6.2652 32 1 3.3803 -3.3115 6.4243 33 1 -0.5009 -2.2014 1.2744 34 1 1.0503 -2.3050 2.1691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062722.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:00 Heat of formation + Delta-G solvation = -83.159465 kcal Electronic energy + Delta-G solvation = -21923.143946 eV Core-core repulsion = 18435.234623 eV Total energy + Delta-G solvation = -3487.909323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.60634 -41.14739 -39.85085 -37.36693 -36.65092 -35.09382 -34.12982 -33.30472 -30.78045 -29.53940 -27.41200 -26.85638 -25.06765 -23.29027 -22.15422 -21.33295 -19.98302 -19.29942 -18.68017 -18.48158 -17.27126 -17.14724 -16.94723 -16.56274 -16.43569 -15.77093 -15.61760 -15.20442 -14.84984 -14.51829 -14.27343 -13.66685 -13.56919 -13.39148 -12.80874 -12.78322 -12.43848 -12.38760 -12.29033 -12.23817 -12.21466 -12.11649 -12.01160 -11.22771 -10.75802 -10.74423 -10.57783 -10.11266 -9.65220 -8.24050 -6.39704 -0.83357 -0.28818 1.18976 1.42791 1.43504 1.51491 1.59003 2.20141 2.39566 2.49350 2.89249 3.02212 3.50611 3.71031 3.79256 3.93227 3.97566 4.14723 4.30049 4.30184 4.48277 4.68042 4.76118 4.97193 5.03396 5.06141 5.20866 5.35285 5.46790 5.56889 5.58271 5.78386 6.10651 6.11651 6.66564 6.74648 6.92314 7.32565 7.49821 8.81852 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.005796 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.028354 B = 4829.858301 C = 5588.429040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.063 0.937 9 C 0.244 3.756 10 O -0.588 6.588 11 C -0.110 4.110 12 C 0.059 3.941 13 N -0.471 5.471 14 C 0.469 3.531 15 N -0.497 5.497 16 C 0.168 3.832 17 C -0.157 4.157 18 C 0.123 3.877 19 C 0.553 3.447 20 O -0.511 6.511 21 O -0.492 6.492 22 N -0.517 5.517 23 C 0.064 3.936 24 H 0.271 0.729 25 H 0.376 0.624 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.235 0.765 31 H 0.198 0.802 32 H 0.437 0.563 33 H 0.057 0.943 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 -9.536 12.047 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.172 4.172 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.081 0.919 9 C 0.203 3.797 10 O -0.396 6.396 11 C -0.148 4.148 12 C -0.067 4.067 13 N -0.196 5.196 14 C 0.114 3.886 15 N -0.213 5.213 16 C -0.001 4.001 17 C -0.179 4.179 18 C -0.024 4.024 19 C 0.394 3.606 20 O -0.399 6.399 21 O -0.305 6.305 22 N -0.239 5.239 23 C -0.063 4.063 24 H 0.081 0.919 25 H 0.226 0.774 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.251 0.749 31 H 0.215 0.785 32 H 0.299 0.701 33 H 0.075 0.925 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.255 -10.039 10.696 14.672 hybrid contribution 0.851 1.829 1.762 2.678 sum 1.105 -8.210 12.458 14.961 Atomic orbital electron populations 1.69682 1.06986 1.28488 1.50418 1.25770 0.95833 1.02569 0.93072 0.85544 0.78413 0.78458 0.78834 1.19529 1.20661 1.19768 1.21880 0.93786 0.91622 1.52342 0.91892 1.19531 0.86040 0.92416 0.81700 1.86104 1.51440 1.52848 1.49246 1.22376 0.98395 0.94613 0.99407 1.22835 0.87375 0.98453 0.98070 1.62287 1.34569 1.10479 1.12283 1.21544 0.86658 0.90216 0.90166 1.68118 1.17746 1.10456 1.24996 1.24317 0.99134 0.91930 0.84703 1.23307 0.92778 0.96848 1.04949 1.20745 0.94587 0.97176 0.89903 1.20288 0.80180 0.74282 0.85847 1.90884 1.75965 1.52387 1.20638 1.84700 1.32531 1.66768 1.46467 1.68561 1.33334 1.20371 1.01603 1.23656 1.00132 0.82137 1.00410 0.91941 0.77370 0.90295 0.90724 0.92682 0.89298 0.74890 0.78519 0.70061 0.92470 0.94318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.75 10.63 21.44 0.23 -49.52 16 2 C 0.03 1.48 5.28 84.65 0.45 1.93 16 3 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.56 -30.10 8.23 25.60 0.21 -29.89 16 8 H 0.06 3.32 7.55 -2.91 -0.02 3.30 16 9 C 0.24 12.44 0.96 -10.34 -0.01 12.43 16 10 O -0.59 -31.89 13.10 -148.98 -1.95 -33.84 16 11 C -0.11 -4.73 6.26 31.47 0.20 -4.53 16 12 C 0.06 2.33 6.58 86.45 0.57 2.89 16 13 N -0.47 -20.51 5.35 -696.36 -3.73 -24.24 16 14 C 0.47 18.07 6.38 261.54 1.67 19.74 16 15 N -0.50 -16.30 10.45 -198.01 -2.07 -18.37 16 16 C 0.17 3.52 11.30 84.79 0.96 4.47 16 17 C -0.16 -3.23 9.71 22.72 0.22 -3.01 16 18 C 0.12 3.51 6.79 41.96 0.28 3.80 16 19 C 0.55 14.28 8.34 70.52 0.59 14.87 16 20 O -0.51 -13.32 17.20 20.20 0.35 -12.97 16 21 O -0.49 -11.55 13.28 -55.55 -0.74 -12.28 16 22 N -0.52 -18.78 8.58 -187.16 -1.61 -20.39 16 23 C 0.06 3.16 5.09 86.65 0.44 3.60 16 24 H 0.27 14.02 8.31 -92.70 -0.77 13.25 16 25 H 0.38 21.00 6.98 -74.06 -0.52 20.48 16 26 H 0.08 3.24 7.67 -2.39 -0.02 3.22 16 27 H 0.07 3.08 8.08 -2.39 -0.02 3.06 16 28 H 0.05 2.06 7.19 -2.39 -0.02 2.04 16 29 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.23 2.22 8.06 -2.91 -0.02 2.19 16 31 H 0.20 2.59 7.73 -2.91 -0.02 2.56 16 32 H 0.44 5.04 9.11 -74.06 -0.67 4.36 16 33 H 0.06 3.13 7.67 -2.38 -0.02 3.11 16 34 H 0.04 2.02 7.30 -2.39 -0.02 2.00 16 Total: -1.00 -69.68 298.16 -1.94 -71.62 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: -0.02 Total: 29.46 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 5.57 Total: 26.31 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -7.18 Total: -112.51 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -2.34 Total: -59.09 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -69.68 -1.94 -71.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062722.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.539 kcal (2) G-P(sol) polarization free energy of solvation -69.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds