Wall clock time and date at job start Tue Mar 31 2020 01:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31395 * 1 3 3 Si 1.86800 * 119.99804 * 2 1 4 4 H 1.48504 * 109.46745 * 269.99645 * 3 2 1 5 5 H 1.48496 * 109.47498 * 29.99954 * 3 2 1 6 6 H 1.48502 * 109.47194 * 150.00394 * 3 2 1 7 7 C 1.39012 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99410 * 160.02747 * 7 2 1 9 9 N 1.36875 * 120.00482 * 340.02439 * 7 2 1 10 10 C 1.46504 * 119.99967 * 341.64553 * 9 7 2 11 11 C 1.50702 * 109.46868 * 95.41781 * 10 9 7 12 12 O 1.20819 * 120.00302 * 0.02562 * 11 10 9 13 13 O 1.34230 * 119.99761 * 180.02562 * 11 10 9 14 14 C 1.34780 * 120.00558 * 161.64682 * 9 7 2 15 15 O 1.21720 * 119.99389 * 5.12590 * 14 9 7 16 16 C 1.46636 * 120.00237 * 185.12874 * 14 9 7 17 17 C 1.36776 * 126.85242 * 186.20199 * 16 14 9 18 18 N 1.33297 * 107.78072 * 179.70255 * 17 16 14 19 19 C 1.30862 * 109.69971 * 0.25956 * 18 17 16 20 20 C 1.50699 * 125.41225 * 179.97438 * 19 18 17 21 21 C 1.52997 * 117.50196 * 163.77222 * 20 19 18 22 22 C 1.53006 * 117.50012 * 95.11523 * 20 19 18 23 23 N 1.34550 * 109.17813 * 0.02562 * 19 18 17 24 24 H 0.96992 * 126.47390 * 179.97438 * 23 19 18 25 25 H 0.96997 * 120.00128 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47346 * 215.41989 * 10 9 7 27 27 H 1.09007 * 109.47001 * 335.42189 * 10 9 7 28 28 H 0.96702 * 117.00137 * 180.02562 * 13 11 10 29 29 H 1.08006 * 126.10933 * 359.96258 * 17 16 14 30 30 H 1.09006 * 115.55440 * 309.44518 * 20 19 18 31 31 H 1.08999 * 117.49768 * 0.02562 * 21 20 19 32 32 H 1.09002 * 117.50335 * 145.02015 * 21 20 19 33 33 H 1.08997 * 117.49874 * 214.98464 * 22 20 19 34 34 H 1.09001 * 117.49735 * 359.97074 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0463 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5455 1.4402 0.7000 7 6 2.0090 -1.2039 0.0005 8 1 3.0403 -1.2321 -0.3190 9 7 1.3865 -2.3535 0.4060 10 6 0.1599 -2.2800 1.2039 11 6 -1.0375 -2.3893 0.2954 12 8 -0.8824 -2.5160 -0.8960 13 8 -2.2765 -2.3458 0.8101 14 6 1.9017 -3.5531 0.0713 15 8 2.9690 -3.6160 -0.5106 16 6 1.1766 -4.7823 0.4080 17 6 1.6183 -6.0664 0.2440 18 7 0.6607 -6.8850 0.6796 19 6 -0.3600 -6.1840 1.1030 20 6 -1.6355 -6.7530 1.6691 21 6 -2.5459 -5.8046 2.4517 22 6 -1.7401 -6.8759 3.1906 23 7 -0.0903 -4.8746 0.9515 24 1 -0.6733 -4.1351 1.1840 25 1 -0.4850 0.8400 -0.0004 26 1 0.1455 -3.0980 1.9241 27 1 0.1280 -1.3282 1.7343 28 1 -3.0131 -2.4202 0.1880 29 1 2.5740 -6.3638 -0.1618 30 1 -2.1128 -7.5268 1.0677 31 1 -2.2226 -4.7690 2.5568 32 1 -3.6221 -5.9546 2.3655 33 1 -2.2864 -7.7303 3.5901 34 1 -0.8862 -6.5457 3.7821 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069537.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:27 Heat of formation + Delta-G solvation = -7.602721 kcal Electronic energy + Delta-G solvation = -22700.051109 eV Core-core repulsion = 19215.418172 eV Total energy + Delta-G solvation = -3484.632937 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.01775 -39.65988 -38.20979 -36.98387 -35.57592 -34.82557 -32.79966 -31.53735 -29.27985 -28.16369 -25.53756 -23.61737 -22.60589 -21.82559 -21.30003 -20.60648 -19.40033 -17.62654 -17.43114 -16.99446 -16.16958 -16.02381 -15.72916 -14.83732 -14.79932 -14.64922 -14.28380 -13.92839 -13.32009 -13.22797 -12.96233 -12.33323 -12.14660 -11.85065 -11.79540 -11.70999 -11.12632 -10.79470 -10.74297 -10.65030 -10.64059 -10.51620 -9.96012 -9.85241 -9.73271 -9.31394 -8.94061 -8.19488 -7.97600 -6.68912 -4.11273 1.84028 2.85043 3.03982 3.12676 3.14597 3.19953 3.34760 3.56437 3.71215 3.95339 4.17958 4.31784 4.46684 4.68337 4.81312 4.83265 5.15591 5.28516 5.32943 5.47860 5.59390 5.70144 5.84340 5.92639 5.99831 6.06140 6.18530 6.30278 6.99771 7.13775 7.33251 7.48602 7.74214 8.11329 8.31942 8.64967 8.82370 9.02353 9.55508 10.40516 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.006779 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.720861 B = 4129.665027 C = 4944.507326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.029 3.971 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.304 4.304 8 H 0.115 0.885 9 N -0.422 5.422 10 C 0.131 3.869 11 C 0.470 3.530 12 O -0.482 6.482 13 O -0.535 6.535 14 C 0.529 3.471 15 O -0.556 6.556 16 C -0.045 4.045 17 C 0.037 3.963 18 N -0.487 5.487 19 C 0.233 3.767 20 C -0.074 4.074 21 C -0.179 4.179 22 C -0.157 4.157 23 N -0.558 5.558 24 H 0.417 0.583 25 H 0.275 0.725 26 H 0.074 0.926 27 H 0.138 0.862 28 H 0.398 0.602 29 H 0.181 0.819 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 -6.102 7.824 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.431 4.431 8 H 0.133 0.867 9 N -0.141 5.141 10 C 0.003 3.997 11 C 0.308 3.692 12 O -0.365 6.365 13 O -0.347 6.347 14 C 0.318 3.682 15 O -0.437 6.437 16 C -0.161 4.161 17 C -0.116 4.116 18 N -0.206 5.206 19 C -0.030 4.030 20 C -0.094 4.094 21 C -0.216 4.216 22 C -0.195 4.195 23 N -0.172 5.172 24 H 0.264 0.736 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.155 0.845 28 H 0.255 0.745 29 H 0.198 0.802 30 H 0.150 0.850 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.220 -6.780 7.419 12.375 hybrid contribution -0.784 2.213 -0.546 2.410 sum -8.004 -4.568 6.873 11.496 Atomic orbital electron populations 1.69690 1.06246 1.28401 1.47651 1.25353 0.95415 1.00375 0.96234 0.85756 0.79381 0.79810 0.78832 1.20079 1.20622 1.19017 1.19789 0.97474 0.82754 1.43122 0.86747 1.43339 1.19863 1.05652 1.45222 1.21042 0.82156 1.04989 0.91513 1.23795 0.83541 0.72228 0.89605 1.90673 1.85654 1.43327 1.16854 1.84511 1.17215 1.86777 1.46246 1.16683 0.87028 0.81166 0.83283 1.90692 1.22360 1.85617 1.45059 1.21785 0.86813 0.98397 1.09135 1.22483 0.99490 0.87030 1.02552 1.69973 1.00526 1.33532 1.16585 1.22136 0.96898 0.80258 1.03711 1.20177 0.91808 1.02705 0.94713 1.23098 0.98478 0.96357 1.03685 1.23036 1.02576 1.01122 0.92790 1.44348 1.15181 1.09192 1.48493 0.73573 0.91462 0.90870 0.84464 0.74452 0.80179 0.85033 0.88693 0.87359 0.87630 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.02 9.12 55.50 0.51 -21.51 16 2 C 0.03 0.74 4.90 -17.45 -0.09 0.65 16 3 Si 0.94 19.63 29.60 -169.99 -5.03 14.60 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.30 -8.12 9.34 -15.01 -0.14 -8.26 16 8 H 0.11 3.17 7.35 -52.48 -0.39 2.78 16 9 N -0.42 -10.57 2.16 -117.59 -0.25 -10.83 16 10 C 0.13 2.76 4.74 -5.19 -0.02 2.73 16 11 C 0.47 9.82 3.90 36.01 0.14 9.96 16 12 O -0.48 -12.16 16.68 -18.74 -0.31 -12.48 16 13 O -0.54 -8.54 13.33 -39.26 -0.52 -9.06 16 14 C 0.53 13.43 7.40 -12.87 -0.10 13.33 16 15 O -0.56 -15.53 16.55 5.17 0.09 -15.44 16 16 C -0.04 -0.97 6.59 -82.15 -0.54 -1.51 16 17 C 0.04 0.75 11.67 -17.44 -0.20 0.55 16 18 N -0.49 -9.25 11.20 -10.55 -0.12 -9.36 16 19 C 0.23 3.97 7.62 -155.56 -1.19 2.78 16 20 C -0.07 -0.91 6.33 -91.77 -0.58 -1.50 16 21 C -0.18 -1.78 10.11 -26.70 -0.27 -2.05 16 22 C -0.16 -1.55 10.24 -26.69 -0.27 -1.82 16 23 N -0.56 -10.33 4.67 -7.01 -0.03 -10.36 16 24 H 0.42 7.26 2.73 -40.82 -0.11 7.15 16 25 H 0.27 6.54 8.31 -40.82 -0.34 6.21 16 26 H 0.07 1.33 5.45 -51.93 -0.28 1.05 16 27 H 0.14 2.93 6.49 -51.93 -0.34 2.59 16 28 H 0.40 4.81 9.10 45.56 0.41 5.22 16 29 H 0.18 3.36 8.06 -52.48 -0.42 2.94 16 30 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.09 1.03 7.30 -51.93 -0.38 0.65 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 294.84 15.07 4.44 4.44 Total: -1.00 -33.22 294.84 -6.83 -40.04 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -2.33 Total: 15.10 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: -3.26 Total: 14.87 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.10 Total: -52.07 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.75 Total: -36.98 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.22 -6.83 -40.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069537.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.441 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds