Wall clock time and date at job start Tue Mar 31 2020 01:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 119.99826 * 2 1 4 4 H 1.48494 * 109.47203 * 239.99976 * 3 2 1 5 5 H 1.48502 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46981 * 119.99569 * 3 2 1 7 7 C 1.38950 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99844 * 198.21420 * 7 2 1 9 9 N 1.37096 * 119.99742 * 18.21161 * 7 2 1 10 10 C 1.34772 * 120.00200 * 44.28214 * 9 7 2 11 11 O 1.21293 * 120.00079 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00346 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.47500 * 180.02562 * 12 10 9 14 14 C 1.35047 * 124.88318 * 125.28220 * 13 12 10 15 15 C 1.35338 * 107.24484 * 180.13346 * 14 13 12 16 16 C 1.41544 * 105.50267 * 359.61901 * 15 14 13 17 17 C 1.47585 * 126.52716 * 180.23657 * 16 15 14 18 18 O 1.21485 * 119.99835 * 0.02562 * 17 16 15 19 19 O 1.34733 * 120.00215 * 180.02562 * 17 16 15 20 20 N 1.28476 * 124.87864 * 304.97546 * 13 12 10 21 21 C 1.46503 * 119.99827 * 224.29020 * 9 7 2 22 22 C 1.53001 * 117.49937 * 3.22236 * 21 9 7 23 23 C 1.52998 * 117.49403 * 294.60198 * 21 9 7 24 24 H 0.96996 * 119.99758 * 354.92994 * 1 2 3 25 25 H 1.09001 * 109.46758 * 60.00460 * 12 10 9 26 26 H 1.08998 * 109.47363 * 300.01450 * 12 10 9 27 27 H 1.08001 * 126.37764 * 0.02562 * 14 13 12 28 28 H 1.08003 * 127.25452 * 179.88990 * 15 14 13 29 29 H 0.96698 * 117.00163 * 180.02562 * 19 17 16 30 30 H 1.08995 * 115.55188 * 148.93460 * 21 9 7 31 31 H 1.09005 * 117.49561 * 0.02562 * 22 21 9 32 32 H 1.08995 * 117.49920 * 145.02478 * 22 21 9 33 33 H 1.09010 * 117.49567 * 214.97726 * 23 21 9 34 34 H 1.08998 * 117.50481 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0090 -1.2033 0.0005 8 1 3.0483 -1.2265 0.2929 9 7 1.3750 -2.3610 -0.3700 10 6 0.5784 -2.3749 -1.4570 11 8 0.4227 -1.3633 -2.1078 12 6 -0.1180 -3.6476 -1.8647 13 7 -0.9173 -3.4032 -3.0678 14 6 -0.8203 -4.1077 -4.2158 15 6 -1.7139 -3.5821 -5.0858 16 6 -2.3520 -2.5314 -4.3842 17 6 -3.4157 -1.6487 -4.9013 18 8 -3.8252 -1.7915 -6.0362 19 8 -3.9327 -0.6846 -4.1149 20 7 -1.8153 -2.4913 -3.1805 21 6 1.5633 -3.5831 0.4158 22 6 2.4185 -3.4848 1.6807 23 6 2.9644 -4.1973 0.4416 24 1 -0.4849 0.8367 0.0742 25 1 -0.7695 -3.9801 -1.0566 26 1 0.6248 -4.4178 -2.0726 27 1 -0.1527 -4.9353 -4.4051 28 1 -1.9036 -3.9003 -6.1003 29 1 -4.6276 -0.1316 -4.4976 30 1 0.7140 -4.2659 0.4338 31 1 2.8406 -2.5108 1.9284 32 1 2.1317 -4.1031 2.5313 33 1 3.0367 -5.2844 0.4772 34 1 3.7459 -3.6925 -0.1263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:46 Heat of formation + Delta-G solvation = -17.212598 kcal Electronic energy + Delta-G solvation = -21736.571401 eV Core-core repulsion = 18251.521749 eV Total energy + Delta-G solvation = -3485.049652 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.63810 -40.94438 -40.30414 -37.76716 -37.14535 -34.98603 -34.21629 -32.83298 -31.70807 -29.58135 -26.92889 -25.19707 -23.15785 -22.83094 -22.50456 -21.81654 -21.01559 -18.97893 -18.69455 -18.51080 -17.86360 -17.32552 -16.92913 -16.68060 -16.17495 -15.80396 -15.66923 -14.95459 -14.70177 -14.44198 -14.37434 -14.03964 -13.70345 -13.36450 -12.91464 -12.80729 -12.66330 -12.60602 -12.17763 -12.14453 -11.99881 -11.70363 -11.64603 -11.18937 -10.77595 -10.48143 -10.09769 -9.84561 -8.98724 -8.20738 -5.99395 0.32420 1.16492 1.33489 1.42293 1.44293 1.45652 2.13758 2.15768 2.22952 2.37421 2.99201 3.14515 3.35334 3.53225 3.90625 4.00585 4.12956 4.17563 4.24585 4.30997 4.51075 4.52542 4.72501 4.76118 4.97114 5.08016 5.32396 5.35600 5.43711 5.47586 5.54430 5.86951 6.18094 6.82138 7.00504 7.10928 7.16595 7.65558 8.29178 8.85721 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.006064 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.442414 B = 4616.227116 C = 5856.254178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.254 1.254 7 C -0.353 4.353 8 H 0.080 0.920 9 N -0.437 5.437 10 C 0.452 3.548 11 O -0.566 6.566 12 C 0.108 3.892 13 N -0.260 5.260 14 C -0.002 4.002 15 C -0.187 4.187 16 C -0.061 4.061 17 C 0.582 3.418 18 O -0.534 6.534 19 O -0.505 6.505 20 N -0.241 5.241 21 C 0.038 3.962 22 C -0.176 4.176 23 C -0.173 4.173 24 H 0.257 0.743 25 H 0.124 0.876 26 H 0.173 0.827 27 H 0.238 0.762 28 H 0.185 0.815 29 H 0.431 0.569 30 H 0.137 0.863 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 -13.154 -2.402 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.184 4.184 3 Si 0.788 3.212 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.178 1.178 7 C -0.481 4.481 8 H 0.098 0.902 9 N -0.158 5.158 10 C 0.239 3.761 11 O -0.445 6.445 12 C -0.015 4.015 13 N -0.050 5.050 14 C -0.143 4.143 15 C -0.214 4.214 16 C -0.217 4.217 17 C 0.425 3.575 18 O -0.424 6.424 19 O -0.318 6.318 20 N -0.079 5.079 21 C -0.067 4.067 22 C -0.213 4.213 23 C -0.212 4.212 24 H 0.066 0.934 25 H 0.141 0.859 26 H 0.190 0.810 27 H 0.254 0.746 28 H 0.202 0.798 29 H 0.293 0.707 30 H 0.154 0.846 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.145 -12.215 -1.810 12.350 hybrid contribution -0.271 1.529 -0.787 1.741 sum -0.126 -10.687 -2.596 10.998 Atomic orbital electron populations 1.69922 1.07776 1.27513 1.44381 1.25998 0.95390 1.02428 0.94555 0.85491 0.78171 0.78794 0.78732 1.21052 1.21934 1.17788 1.18975 0.94750 0.85002 1.49348 0.90210 1.42881 1.43514 1.08119 1.21295 1.20527 0.83755 0.89766 0.82090 1.90609 1.63154 1.36071 1.54677 1.22160 0.95566 0.98331 0.85418 1.45414 1.25311 1.21179 1.13089 1.23713 1.03763 1.02004 0.84820 1.21999 0.99699 0.97334 1.02401 1.21124 1.03450 1.03037 0.94089 1.19369 0.78746 0.77461 0.81879 1.90829 1.60771 1.71151 1.19618 1.84724 1.54789 1.44537 1.47726 1.73904 1.03152 1.09646 1.21195 1.22170 0.95526 0.90240 0.98740 1.23106 1.03805 1.02150 0.92243 1.23355 0.96307 1.00748 1.00748 0.93399 0.85871 0.81013 0.74556 0.79770 0.70738 0.84614 0.90472 0.86519 0.85091 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -52.49 11.74 21.66 0.25 -52.23 16 2 C 0.02 1.33 4.39 84.93 0.37 1.70 16 3 Si 0.96 45.91 29.59 68.60 2.03 47.94 16 4 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.25 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.35 -18.59 7.92 84.04 0.67 -17.92 16 8 H 0.08 4.05 7.26 -2.91 -0.02 4.03 16 9 N -0.44 -19.93 2.83 -613.15 -1.74 -21.67 16 10 C 0.45 21.27 6.97 87.66 0.61 21.88 16 11 O -0.57 -33.48 13.40 -3.07 -0.04 -33.52 16 12 C 0.11 3.44 5.50 85.63 0.47 3.91 16 13 N -0.26 -9.12 3.17 -351.71 -1.11 -10.23 16 14 C 0.00 -0.06 11.40 83.53 0.95 0.89 16 15 C -0.19 -5.56 10.81 22.42 0.24 -5.32 16 16 C -0.06 -2.36 7.17 42.42 0.30 -2.05 16 17 C 0.58 21.55 8.34 70.29 0.59 22.13 16 18 O -0.53 -19.95 17.71 19.88 0.35 -19.60 16 19 O -0.51 -17.07 13.44 -56.43 -0.76 -17.83 16 20 N -0.24 -10.50 10.90 -48.22 -0.53 -11.03 16 21 C 0.04 1.22 5.87 44.99 0.26 1.48 16 22 C -0.18 -5.23 9.80 30.59 0.30 -4.93 16 23 C -0.17 -4.41 10.36 30.59 0.32 -4.10 16 24 H 0.26 15.47 8.32 -92.71 -0.77 14.70 16 25 H 0.12 3.48 7.56 -2.39 -0.02 3.46 16 26 H 0.17 3.42 8.01 -2.39 -0.02 3.40 16 27 H 0.24 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.19 4.38 8.06 -2.91 -0.02 4.35 16 29 H 0.43 8.96 9.11 -74.06 -0.67 8.28 16 30 H 0.14 3.42 6.96 -2.39 -0.02 3.40 16 31 H 0.08 2.80 6.72 -2.38 -0.02 2.79 16 32 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -86.82 307.10 4.02 -82.80 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.48 Total: 17.70 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 5.09 Total: 17.68 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -3.12 Total: -95.16 kcal Atomic # 8 Polarization: -70.51 SS G_CDS: -0.45 Total: -70.95 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -86.82 4.02 -82.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.584 kcal (2) G-P(sol) polarization free energy of solvation -86.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds