Wall clock time and date at job start Tue Mar 31 2020 01:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99842 * 2 1 4 4 H 1.48502 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47289 * 300.00207 * 3 2 1 6 6 H 1.48501 * 109.47239 * 60.00373 * 3 2 1 7 7 C 1.38816 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00128 * 189.98321 * 7 2 1 9 9 N 1.36939 * 119.99409 * 9.98121 * 7 2 1 10 10 C 1.46494 * 119.99640 * 191.82154 * 9 7 2 11 11 C 1.50701 * 109.47524 * 274.80243 * 10 9 7 12 12 O 1.20823 * 120.00057 * 4.99830 * 11 10 9 13 13 O 1.34224 * 119.99872 * 184.99700 * 11 10 9 14 14 C 1.46497 * 120.00251 * 11.83235 * 9 7 2 15 15 C 1.50703 * 109.46445 * 267.60329 * 14 9 7 16 16 O 1.21715 * 120.00526 * 5.44116 * 15 14 9 17 17 N 1.32307 * 119.99694 * 185.44420 * 15 14 9 18 18 C 1.34670 * 119.99801 * 243.45059 * 17 15 14 19 19 C 1.41194 * 120.66788 * 173.93157 * 18 17 15 20 20 C 1.35344 * 119.26466 * 179.97438 * 19 18 17 21 21 N 1.35434 * 120.68439 * 0.02562 * 20 19 18 22 22 H 0.96999 * 119.27916 * 180.02562 * 21 20 19 23 23 C 1.35424 * 121.43989 * 359.97438 * 21 20 19 24 24 C 1.35356 * 120.68416 * 0.02562 * 23 21 20 25 25 H 0.96999 * 120.00025 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47033 * 34.80311 * 10 9 7 27 27 H 1.09000 * 109.47407 * 154.80255 * 10 9 7 28 28 H 0.96707 * 117.00090 * 179.97438 * 13 11 10 29 29 H 1.08995 * 109.47507 * 147.60808 * 14 9 7 30 30 H 1.08994 * 109.47384 * 27.59773 * 14 9 7 31 31 H 1.07996 * 120.36712 * 359.95739 * 19 18 17 32 32 H 1.08001 * 119.65728 * 179.72344 * 20 19 18 33 33 H 1.07997 * 119.66134 * 180.02562 * 23 21 20 34 34 H 1.07994 * 120.36851 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0780 -1.2093 0.1616 9 7 1.3411 -2.3790 -0.2066 10 6 2.0114 -3.6567 0.0464 11 6 2.7972 -4.0622 -1.1739 12 8 2.8712 -3.3151 -2.1206 13 8 3.4148 -5.2534 -1.2092 14 6 -0.0450 -2.3602 -0.6804 15 6 -0.9800 -2.3875 0.5013 16 8 -0.5343 -2.3196 1.6318 17 7 -2.2855 -2.4854 0.3097 18 6 -3.0993 -1.4836 0.6940 19 6 -4.4763 -1.5149 0.3832 20 6 -5.2684 -0.4932 0.7839 21 7 -4.7527 0.5510 1.4751 22 1 -5.3391 1.2722 1.7526 23 6 -3.4365 0.6099 1.7883 24 6 -2.5929 -0.3809 1.4158 25 1 -0.4850 0.8400 0.0004 26 1 2.6873 -3.5506 0.8950 27 1 1.2661 -4.4203 0.2689 28 1 3.9063 -5.4695 -2.0135 29 1 -0.2266 -3.2330 -1.3075 30 1 -0.2186 -1.4537 -1.2601 31 1 -4.8928 -2.3448 -0.1683 32 1 -6.3217 -0.5085 0.5457 33 1 -3.0559 1.4561 2.3410 34 1 -1.5442 -0.3290 1.6686 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071600.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:25 Heat of formation + Delta-G solvation = -18.351798 kcal Electronic energy + Delta-G solvation = -21940.181316 eV Core-core repulsion = 18455.082264 eV Total energy + Delta-G solvation = -3485.099052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.12243 -39.27589 -37.96853 -35.60950 -34.82192 -33.82464 -31.43265 -31.13076 -30.10149 -27.75284 -26.42788 -23.56979 -23.00965 -22.20750 -20.25206 -18.89663 -18.49525 -17.25193 -16.87575 -16.12264 -15.82211 -15.47881 -14.91632 -14.87417 -14.49073 -14.13283 -13.79838 -13.61010 -13.42329 -13.01121 -12.44755 -12.25005 -12.02775 -11.41796 -11.26272 -10.96076 -10.90103 -10.65644 -10.45817 -10.16494 -10.01570 -9.88910 -9.73119 -9.24622 -9.15149 -8.67774 -7.90007 -7.05157 -6.60815 -5.76922 -3.16341 1.53155 1.87425 3.15453 3.24696 3.37752 3.44324 3.48233 3.80136 3.86744 4.37352 4.50236 4.78538 5.08496 5.36147 5.45561 5.55710 5.74146 5.87983 6.14894 6.15760 6.24653 6.35268 6.44734 6.68887 6.84775 7.15955 7.25796 7.28796 7.33203 7.50389 7.71072 7.79747 8.25489 8.79610 8.93952 9.12907 9.68144 9.87344 10.15830 11.28024 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.006387 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.845959 B = 4382.892563 C = 5594.638473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.004 4.004 3 Si 0.918 3.082 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.551 5.551 10 C 0.160 3.840 11 C 0.433 3.567 12 O -0.504 6.504 13 O -0.536 6.536 14 C 0.158 3.842 15 C 0.505 3.495 16 O -0.525 6.525 17 N -0.632 5.632 18 C 0.291 3.709 19 C -0.203 4.203 20 C 0.112 3.888 21 N -0.600 5.600 22 H 0.410 0.590 23 C 0.083 3.917 24 C -0.196 4.196 25 H 0.251 0.749 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.388 0.612 29 H 0.030 0.970 30 H 0.132 0.868 31 H 0.141 0.859 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 0.494 1.639 10.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.198 4.198 3 Si 0.749 3.251 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.269 5.269 10 C 0.028 3.972 11 C 0.272 3.728 12 O -0.390 6.390 13 O -0.347 6.347 14 C 0.029 3.971 15 C 0.292 3.708 16 O -0.401 6.401 17 N -0.367 5.367 18 C 0.129 3.871 19 C -0.230 4.230 20 C -0.018 4.018 21 N -0.206 5.206 22 H 0.244 0.756 23 C -0.045 4.045 24 C -0.223 4.223 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.244 0.756 29 H 0.048 0.952 30 H 0.149 0.851 31 H 0.159 0.841 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.518 0.115 1.930 10.694 hybrid contribution 0.862 1.634 -0.308 1.873 sum -9.655 1.749 1.622 9.946 Atomic orbital electron populations 1.69867 1.04918 1.24727 1.56899 1.24723 0.95641 0.97948 1.01535 0.85946 0.78995 0.83246 0.76900 1.20536 1.21745 1.21924 1.19357 0.91601 0.83496 1.40645 0.90597 1.43586 1.09027 1.00127 1.74126 1.20322 0.95934 0.90200 0.90755 1.26689 0.76834 0.77366 0.91954 1.90640 1.58381 1.52160 1.37819 1.84693 1.64272 1.39533 1.46230 1.21106 0.81455 1.01674 0.92846 1.22268 0.86481 0.70342 0.91702 1.90566 1.81005 1.42079 1.26461 1.68695 1.06737 1.27402 1.33853 1.18688 0.91518 0.89780 0.87157 1.20607 0.92894 1.00826 1.08721 1.21577 0.98778 0.87856 0.93603 1.40816 1.08776 1.21295 1.49673 0.75588 1.21623 0.82693 1.00178 0.99969 1.22487 1.03260 0.94664 1.01842 0.93758 0.89070 0.89836 0.75554 0.95241 0.85056 0.84077 0.82423 0.82870 0.80675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.99 6.41 55.49 0.36 -24.63 16 2 C 0.00 -0.11 5.22 -17.43 -0.09 -0.21 16 3 Si 0.92 22.17 29.57 -169.99 -5.03 17.15 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.22 -6.27 9.58 -15.06 -0.14 -6.41 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 9 N -0.55 -14.64 1.59 -175.99 -0.28 -14.92 16 10 C 0.16 3.58 6.28 -5.20 -0.03 3.54 16 11 C 0.43 9.17 8.37 36.01 0.30 9.47 16 12 O -0.50 -12.49 17.03 -18.75 -0.32 -12.81 16 13 O -0.54 -8.94 13.42 -39.24 -0.53 -9.47 16 14 C 0.16 4.17 5.46 -5.19 -0.03 4.14 16 15 C 0.50 13.37 4.72 -12.07 -0.06 13.32 16 16 O -0.52 -15.30 15.55 5.18 0.08 -15.22 16 17 N -0.63 -15.17 10.45 -10.38 -0.11 -15.28 16 18 C 0.29 5.92 6.59 -84.38 -0.56 5.37 16 19 C -0.20 -2.99 10.00 -39.49 -0.39 -3.39 16 20 C 0.11 1.11 11.17 -16.99 -0.19 0.92 16 21 N -0.60 -5.64 5.23 -13.05 -0.07 -5.71 16 22 H 0.41 2.03 8.90 -40.82 -0.36 1.66 16 23 C 0.08 1.12 11.17 -16.99 -0.19 0.93 16 24 C -0.20 -3.87 8.28 -39.49 -0.33 -4.20 16 25 H 0.25 6.61 8.12 -40.82 -0.33 6.28 16 26 H 0.09 1.94 8.08 -51.93 -0.42 1.52 16 27 H 0.08 1.76 8.04 -51.93 -0.42 1.34 16 28 H 0.39 4.72 9.10 45.56 0.41 5.13 16 29 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.13 3.77 5.83 -51.93 -0.30 3.46 16 31 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.18 4.30 4.73 -52.49 -0.25 4.05 16 LS Contribution 300.32 15.07 4.53 4.53 Total: -1.00 -38.31 300.32 -5.64 -43.95 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -2.56 Total: 8.92 kcal Atomic # 6 Polarization: 25.21 SS G_CDS: -1.71 Total: 23.50 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.10 Total: -60.54 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.77 Total: -37.50 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -38.31 -5.64 -43.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071600.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.597 kcal (2) G-P(sol) polarization free energy of solvation -38.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds