Wall clock time and date at job start Tue Mar 31 2020 01:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99842 * 2 1 4 4 H 1.48502 * 109.47010 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47289 * 300.00207 * 3 2 1 6 6 H 1.48501 * 109.47239 * 60.00373 * 3 2 1 7 7 C 1.38816 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00128 * 189.98321 * 7 2 1 9 9 N 1.36939 * 119.99409 * 9.98121 * 7 2 1 10 10 C 1.46494 * 119.99640 * 191.82154 * 9 7 2 11 11 C 1.50701 * 109.47524 * 274.80243 * 10 9 7 12 12 O 1.20823 * 120.00057 * 4.99830 * 11 10 9 13 13 O 1.34224 * 119.99872 * 184.99700 * 11 10 9 14 14 C 1.46497 * 120.00251 * 11.83235 * 9 7 2 15 15 C 1.50703 * 109.46445 * 267.60329 * 14 9 7 16 16 O 1.21715 * 120.00526 * 5.44116 * 15 14 9 17 17 N 1.32307 * 119.99694 * 185.44420 * 15 14 9 18 18 C 1.34670 * 119.99801 * 243.45059 * 17 15 14 19 19 C 1.41194 * 120.66788 * 173.93157 * 18 17 15 20 20 C 1.35344 * 119.26466 * 179.97438 * 19 18 17 21 21 N 1.35434 * 120.68439 * 0.02562 * 20 19 18 22 22 H 0.96999 * 119.27916 * 180.02562 * 21 20 19 23 23 C 1.35424 * 121.43989 * 359.97438 * 21 20 19 24 24 C 1.35356 * 120.68416 * 0.02562 * 23 21 20 25 25 H 0.96999 * 120.00025 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47033 * 34.80311 * 10 9 7 27 27 H 1.09000 * 109.47407 * 154.80255 * 10 9 7 28 28 H 0.96707 * 117.00090 * 179.97438 * 13 11 10 29 29 H 1.08995 * 109.47507 * 147.60808 * 14 9 7 30 30 H 1.08994 * 109.47384 * 27.59773 * 14 9 7 31 31 H 1.07996 * 120.36712 * 359.95739 * 19 18 17 32 32 H 1.08001 * 119.65728 * 179.72344 * 20 19 18 33 33 H 1.07997 * 119.66134 * 180.02562 * 23 21 20 34 34 H 1.07994 * 120.36851 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0780 -1.2093 0.1616 9 7 1.3411 -2.3790 -0.2066 10 6 2.0114 -3.6567 0.0464 11 6 2.7972 -4.0622 -1.1739 12 8 2.8712 -3.3151 -2.1206 13 8 3.4148 -5.2534 -1.2092 14 6 -0.0450 -2.3602 -0.6804 15 6 -0.9800 -2.3875 0.5013 16 8 -0.5343 -2.3196 1.6318 17 7 -2.2855 -2.4854 0.3097 18 6 -3.0993 -1.4836 0.6940 19 6 -4.4763 -1.5149 0.3832 20 6 -5.2684 -0.4932 0.7839 21 7 -4.7527 0.5510 1.4751 22 1 -5.3391 1.2722 1.7526 23 6 -3.4365 0.6099 1.7883 24 6 -2.5929 -0.3809 1.4158 25 1 -0.4850 0.8400 0.0004 26 1 2.6873 -3.5506 0.8950 27 1 1.2661 -4.4203 0.2689 28 1 3.9063 -5.4695 -2.0135 29 1 -0.2266 -3.2330 -1.3075 30 1 -0.2186 -1.4537 -1.2601 31 1 -4.8928 -2.3448 -0.1683 32 1 -6.3217 -0.5085 0.5457 33 1 -3.0559 1.4561 2.3410 34 1 -1.5442 -0.3290 1.6686 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071600.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:24 Heat of formation + Delta-G solvation = -50.741061 kcal Electronic energy + Delta-G solvation = -21941.585820 eV Core-core repulsion = 18455.082264 eV Total energy + Delta-G solvation = -3486.503556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37426 -40.97284 -39.68614 -37.31404 -36.56614 -35.39218 -33.38805 -32.34517 -31.60099 -29.56828 -28.37920 -25.13806 -24.34049 -23.77955 -21.97957 -20.32742 -19.80098 -18.91055 -18.82247 -17.60924 -17.37511 -17.10466 -16.76903 -16.60140 -15.90329 -15.68648 -15.45611 -15.10280 -14.94568 -14.69648 -13.97507 -13.90875 -13.51198 -13.29801 -12.87716 -12.75744 -12.54298 -12.35643 -12.17216 -12.06545 -11.93337 -11.82233 -11.54597 -10.98402 -10.58574 -10.35207 -9.71407 -8.94132 -8.11491 -7.78252 -5.22766 0.31122 0.64997 1.43152 1.44656 1.46599 1.56372 2.11983 2.25321 2.27103 2.55918 2.94809 3.35953 3.49706 3.97412 3.99212 4.30854 4.38612 4.46086 4.53166 4.56462 4.70010 4.82343 4.97517 5.10246 5.38877 5.48437 5.58115 5.68183 5.76635 6.07132 6.18021 6.25621 6.57475 7.07149 7.23752 7.31181 7.70326 8.08736 8.16118 9.23563 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017787 B = 0.006387 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.845959 B = 4382.892563 C = 5594.638473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.050 4.050 3 Si 0.980 3.020 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.252 4.252 8 H 0.068 0.932 9 N -0.569 5.569 10 C 0.155 3.845 11 C 0.451 3.549 12 O -0.543 6.543 13 O -0.516 6.516 14 C 0.165 3.835 15 C 0.520 3.480 16 O -0.577 6.577 17 N -0.706 5.706 18 C 0.287 3.713 19 C -0.244 4.244 20 C 0.166 3.834 21 N -0.562 5.562 22 H 0.444 0.556 23 C 0.139 3.861 24 C -0.265 4.265 25 H 0.250 0.750 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.415 0.585 29 H 0.027 0.973 30 H 0.103 0.897 31 H 0.150 0.850 32 H 0.232 0.768 33 H 0.191 0.809 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 2.643 2.182 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.244 4.244 3 Si 0.809 3.191 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.381 4.381 8 H 0.086 0.914 9 N -0.288 5.288 10 C 0.024 3.976 11 C 0.291 3.709 12 O -0.433 6.433 13 O -0.329 6.329 14 C 0.036 3.964 15 C 0.309 3.691 16 O -0.458 6.458 17 N -0.447 5.447 18 C 0.133 3.867 19 C -0.270 4.270 20 C 0.034 3.966 21 N -0.167 5.167 22 H 0.285 0.715 23 C 0.007 3.993 24 C -0.292 4.292 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.275 0.725 29 H 0.045 0.955 30 H 0.121 0.879 31 H 0.168 0.832 32 H 0.248 0.752 33 H 0.208 0.792 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.000 2.296 2.485 14.403 hybrid contribution 1.558 1.138 -0.374 1.965 sum -12.441 3.434 2.111 13.078 Atomic orbital electron populations 1.70079 1.05392 1.24890 1.55943 1.25532 0.96764 1.00596 1.01464 0.85020 0.77731 0.79660 0.76721 1.20607 1.21581 1.21300 1.19468 0.91435 0.84800 1.42383 0.91415 1.43635 1.09313 1.00953 1.74914 1.20394 0.96329 0.89245 0.91624 1.25971 0.76376 0.77926 0.90658 1.90630 1.59957 1.53700 1.38966 1.84577 1.63739 1.36834 1.47730 1.20885 0.82239 0.99925 0.93345 1.22029 0.87747 0.69027 0.90337 1.90480 1.81909 1.45414 1.27977 1.68482 1.05433 1.29494 1.41305 1.19380 0.93515 0.88635 0.85198 1.20789 0.90813 1.03841 1.11588 1.22531 1.00912 0.84714 0.88441 1.41154 1.07743 1.21672 1.46128 0.71495 1.21928 0.83440 0.98290 0.95609 1.22090 1.02417 0.97939 1.06731 0.93984 0.88373 0.89031 0.72478 0.95514 0.87909 0.83193 0.75212 0.79234 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.72 6.41 21.65 0.14 -52.58 16 2 C -0.05 -2.89 5.22 84.86 0.44 -2.45 16 3 Si 0.98 47.08 29.57 68.60 2.03 49.10 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.25 -15.02 9.58 84.03 0.81 -14.22 16 8 H 0.07 4.00 7.85 -2.91 -0.02 3.98 16 9 N -0.57 -32.30 1.59 -710.71 -1.13 -33.43 16 10 C 0.15 7.30 6.28 85.63 0.54 7.84 16 11 C 0.45 19.55 8.37 71.24 0.60 20.15 16 12 O -0.54 -27.79 17.03 21.97 0.37 -27.42 16 13 O -0.52 -16.77 13.42 -51.36 -0.69 -17.46 16 14 C 0.16 9.45 5.46 85.63 0.47 9.91 16 15 C 0.52 29.83 4.72 88.04 0.42 30.25 16 16 O -0.58 -36.51 15.55 -4.40 -0.07 -36.58 16 17 N -0.71 -36.37 10.45 -306.33 -3.20 -39.57 16 18 C 0.29 11.94 6.59 40.16 0.26 12.20 16 19 C -0.24 -6.58 10.00 22.33 0.22 -6.36 16 20 C 0.17 2.17 11.17 83.47 0.93 3.10 16 21 N -0.56 -6.64 5.23 -195.19 -1.02 -7.66 16 22 H 0.44 0.41 8.90 -92.71 -0.82 -0.41 16 23 C 0.14 3.21 11.17 83.47 0.93 4.14 16 24 C -0.26 -10.54 8.28 22.33 0.18 -10.35 16 25 H 0.25 13.68 8.12 -92.71 -0.75 12.93 16 26 H 0.10 4.41 8.08 -2.39 -0.02 4.39 16 27 H 0.09 4.10 8.04 -2.39 -0.02 4.08 16 28 H 0.41 9.36 9.10 -74.05 -0.67 8.68 16 29 H 0.03 1.48 8.09 -2.39 -0.02 1.46 16 30 H 0.10 6.40 5.83 -2.39 -0.01 6.39 16 31 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.23 -0.01 8.06 -2.91 -0.02 -0.03 16 33 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.12 6.45 4.73 -2.91 -0.01 6.44 16 Total: -1.00 -96.85 300.32 1.93 -94.92 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.31 Total: 16.45 kcal Atomic # 6 Polarization: 48.42 SS G_CDS: 5.80 Total: 54.22 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -5.21 Total: -133.24 kcal Atomic # 8 Polarization: -81.07 SS G_CDS: -0.38 Total: -81.45 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Total: -96.85 1.93 -94.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071600.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.178 kcal (2) G-P(sol) polarization free energy of solvation -96.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds