Wall clock time and date at job start Tue Mar 31 2020 00:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47181 * 2 1 4 4 C 1.50696 * 109.47588 * 120.00330 * 2 1 3 5 5 H 1.07992 * 120.00512 * 119.99979 * 4 2 1 6 6 C 1.37879 * 119.99670 * 299.99953 * 4 2 1 7 7 N 1.31516 * 120.00141 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99887 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46818 * 90.00577 * 8 6 4 10 10 H 1.48499 * 109.46877 * 210.00126 * 8 6 4 11 11 H 1.48492 * 109.47090 * 330.00365 * 8 6 4 12 12 N 1.46506 * 109.47311 * 240.00504 * 2 1 3 13 13 C 1.34769 * 120.00274 * 84.99403 * 12 2 1 14 14 O 1.21651 * 119.99781 * 0.02562 * 13 12 2 15 15 C 1.47033 * 120.00138 * 179.97438 * 13 12 2 16 16 C 1.37727 * 125.76854 * 180.02562 * 15 13 12 17 17 C 1.39800 * 106.90054 * 179.74480 * 16 15 13 18 18 C 1.38108 * 106.83027 * 0.35398 * 17 16 15 19 19 C 1.46293 * 125.82510 * 179.90041 * 18 17 16 20 20 C 1.35349 * 120.00221 * 221.32429 * 19 18 17 21 21 C 1.46173 * 120.00006 * 8.61154 * 20 19 18 22 22 O 1.21626 * 120.00208 * 6.75830 * 21 20 19 23 23 O 1.34938 * 119.99948 * 186.76197 * 21 20 19 24 24 O 1.34579 * 108.34769 * 359.64193 * 18 17 16 25 25 H 1.09004 * 109.47700 * 60.00236 * 1 2 3 26 26 H 1.09005 * 109.46875 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47258 * 299.99478 * 1 2 3 28 28 H 0.97005 * 119.99969 * 179.97438 * 7 6 4 29 29 H 0.97002 * 119.99834 * 264.99504 * 12 2 1 30 30 H 1.08002 * 126.54840 * 359.96849 * 16 15 13 31 31 H 1.07997 * 126.58424 * 180.22333 * 17 16 15 32 32 H 1.08000 * 119.99523 * 41.33200 * 19 18 17 33 33 H 1.08003 * 120.00023 * 188.60757 * 20 19 18 34 34 H 0.96701 * 114.00073 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5458 4.4122 10 1 1.3433 -0.9494 5.1119 11 1 2.4861 -2.5662 3.7118 12 7 2.0183 -0.6905 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8580 1.1622 -2.4116 15 6 2.6377 -0.7111 -3.5576 16 6 2.8146 -0.1425 -4.7995 17 6 3.2988 -1.1480 -5.6415 18 6 3.3912 -2.2968 -4.8805 19 6 3.8517 -3.6024 -5.3533 20 6 3.2114 -4.7285 -4.9615 21 6 1.9532 -4.6346 -4.2232 22 8 1.4186 -3.5533 -4.0677 23 8 1.3849 -5.7477 -3.7143 24 8 2.9907 -2.0088 -3.6284 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 0.7081 1.1607 3.4845 29 1 2.2491 -1.6317 -1.1527 30 1 2.6203 0.8848 -5.0701 31 1 3.5501 -1.0464 -6.6869 32 1 4.7028 -3.6675 -6.0150 33 1 3.6299 -5.6966 -5.1943 34 1 0.5559 -5.5859 -3.2435 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:34 Heat of formation + Delta-G solvation = -119.307646 kcal Electronic energy + Delta-G solvation = -21382.747568 eV Core-core repulsion = 17860.977991 eV Total energy + Delta-G solvation = -3521.769577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.50640 -41.06553 -40.43076 -37.15637 -36.88588 -35.06281 -34.42788 -33.88473 -31.47637 -29.83070 -27.41876 -26.32019 -24.24078 -22.77141 -22.49016 -21.36162 -20.58845 -19.80594 -19.16203 -18.26610 -17.77918 -17.32810 -17.14978 -16.52853 -16.28569 -15.77200 -15.52836 -15.14885 -14.95075 -14.49757 -14.18679 -14.08565 -13.92149 -13.75668 -13.25887 -13.04677 -12.95584 -12.82767 -12.56073 -12.33984 -12.18212 -11.69871 -11.30359 -11.21207 -11.15841 -10.88717 -10.65905 -9.99866 -9.18751 -8.22438 -6.40916 -0.60259 0.37696 1.39685 1.42325 1.43590 1.54471 1.65925 2.07645 2.18160 2.28848 2.35849 2.53946 3.07636 3.48540 3.87437 3.96994 4.28638 4.44230 4.59360 4.64745 4.71124 4.77924 4.83591 4.95968 4.99849 5.19644 5.30438 5.44795 5.47619 5.54373 5.56640 5.73998 5.96827 5.99677 6.62268 6.74498 6.92306 7.14234 7.33276 8.84407 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.018373 B = 0.004910 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.591310 B = 5701.790004 C = 6599.151877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H 0.007 0.993 4 C -0.552 4.552 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.977 3.023 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.262 1.262 12 N -0.691 5.691 13 C 0.582 3.418 14 O -0.576 6.576 15 C -0.084 4.084 16 C -0.137 4.137 17 C -0.180 4.180 18 C 0.015 3.985 19 C 0.021 3.979 20 C -0.172 4.172 21 C 0.483 3.517 22 O -0.539 6.539 23 O -0.504 6.504 24 O -0.144 6.144 25 H 0.012 0.988 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.268 0.732 29 H 0.402 0.598 30 H 0.162 0.838 31 H 0.201 0.799 32 H 0.226 0.774 33 H 0.197 0.803 34 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 -14.855 -17.961 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.590 4.590 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.801 3.199 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.186 1.186 12 N -0.338 5.338 13 C 0.369 3.631 14 O -0.459 6.459 15 C -0.137 4.137 16 C -0.158 4.158 17 C -0.199 4.199 18 C -0.038 4.038 19 C 0.004 3.996 20 C -0.190 4.190 21 C 0.330 3.670 22 O -0.430 6.430 23 O -0.315 6.315 24 O -0.038 6.038 25 H 0.031 0.969 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.236 0.764 30 H 0.180 0.820 31 H 0.219 0.781 32 H 0.242 0.758 33 H 0.214 0.786 34 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 6.929 -13.930 -17.701 23.566 hybrid contribution -0.747 -0.015 1.350 1.543 sum 6.182 -13.945 -16.351 22.361 Atomic orbital electron populations 1.21902 0.97912 0.99459 0.99891 1.18527 0.91454 0.92189 0.81267 0.97485 1.21454 1.33086 1.13711 0.90729 0.91290 1.25819 0.94666 0.95582 1.02270 1.70042 1.36559 1.23783 1.24878 0.85274 0.77964 0.78980 0.77693 1.20054 1.20462 1.18637 1.46284 1.63845 1.14037 1.09606 1.17188 0.77992 0.85701 0.82171 1.90767 1.54131 1.16148 1.84873 1.22316 1.11106 0.83156 0.97152 1.22279 1.00796 1.01937 0.90773 1.22480 1.05465 0.89699 1.02219 1.22008 1.01426 0.97586 0.82776 1.22460 0.98087 0.84250 0.94794 1.22936 0.92693 1.02428 1.00967 1.21885 0.87191 0.81303 0.76653 1.91072 1.64874 1.30257 1.56835 1.84993 1.42807 1.36127 1.67604 1.84131 1.62353 1.25354 1.31966 0.96902 0.94367 0.90703 0.92260 0.76370 0.82007 0.78147 0.75782 0.78596 0.71913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.21 9.26 71.98 0.67 -6.55 16 2 C 0.27 15.00 2.56 44.24 0.11 15.11 16 3 H 0.01 0.47 7.58 -2.39 -0.02 0.45 16 4 C -0.55 -30.82 8.73 25.60 0.22 -30.60 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.91 -53.44 11.32 21.45 0.24 -53.20 16 8 Si 0.98 42.94 29.54 68.60 2.03 44.96 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 12 N -0.69 -33.62 5.07 -449.76 -2.28 -35.90 16 13 C 0.58 27.86 7.76 86.55 0.67 28.53 16 14 O -0.58 -31.26 16.53 -4.19 -0.07 -31.33 16 15 C -0.08 -3.25 7.16 24.46 0.18 -3.08 16 16 C -0.14 -4.34 10.64 22.53 0.24 -4.10 16 17 C -0.18 -4.04 10.88 22.62 0.25 -3.80 16 18 C 0.01 0.35 5.46 24.33 0.13 0.48 16 19 C 0.02 0.26 10.15 23.70 0.24 0.50 16 20 C -0.17 -2.20 10.20 23.66 0.24 -1.96 16 21 C 0.48 10.63 8.04 69.88 0.56 11.20 16 22 O -0.54 -17.12 13.38 27.21 0.36 -16.75 16 23 O -0.50 -8.89 13.56 -58.54 -0.79 -9.69 16 24 O -0.14 -4.87 7.77 14.49 0.11 -4.75 16 25 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.07 4.32 6.07 -2.39 -0.01 4.30 16 28 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 29 H 0.40 17.87 8.29 -92.71 -0.77 17.10 16 30 H 0.16 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 33 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 34 H 0.42 5.35 8.98 -74.06 -0.67 4.68 16 Total: -1.00 -80.65 310.11 3.30 -77.36 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.27 Total: 22.16 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 3.96 Total: 7.14 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -2.04 Total: -89.10 kcal Atomic # 8 Polarization: -62.14 SS G_CDS: -0.39 Total: -62.52 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -80.65 3.30 -77.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.950 kcal (2) G-P(sol) polarization free energy of solvation -80.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds