Wall clock time and date at job start Tue Mar 31 2020 00:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.34773 * 119.99910 * 275.00232 * 12 2 1 14 14 O 1.21646 * 120.00452 * 359.97438 * 13 12 2 15 15 C 1.47032 * 120.00165 * 179.97438 * 13 12 2 16 16 C 1.37725 * 125.77230 * 179.70999 * 15 13 12 17 17 C 1.39799 * 106.90285 * 179.90410 * 16 15 13 18 18 C 1.38116 * 106.83320 * 0.36000 * 17 16 15 19 19 C 1.46277 * 125.82763 * 179.77865 * 18 17 16 20 20 C 1.35356 * 120.00312 * 179.97438 * 19 18 17 21 21 C 1.46173 * 120.00486 * 179.97438 * 20 19 18 22 22 O 1.21633 * 119.99968 * 0.02562 * 21 20 19 23 23 O 1.34933 * 119.99999 * 180.02562 * 21 20 19 24 24 O 1.34586 * 108.34317 * 359.77561 * 18 17 16 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 29 29 H 0.96995 * 120.00293 * 94.99410 * 12 2 1 30 30 H 1.08001 * 126.54771 * 0.02562 * 16 15 13 31 31 H 1.07998 * 126.58415 * 180.13303 * 17 16 15 32 32 H 1.08000 * 120.00026 * 359.97087 * 19 18 17 33 33 H 1.08008 * 119.99484 * 0.02562 * 20 19 18 34 34 H 0.96698 * 113.99480 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8581 1.1621 2.4117 15 6 2.6366 -0.7114 3.5578 16 6 2.8183 -0.1418 4.7985 17 6 3.2915 -1.1500 5.6434 18 6 3.3884 -2.2978 4.8812 19 6 3.8471 -3.6037 5.3544 20 6 3.8949 -4.6539 4.5019 21 6 4.3538 -5.9588 4.9746 22 8 4.6923 -6.1010 6.1342 23 8 4.4019 -7.0056 4.1245 24 8 2.9888 -2.0095 3.6288 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7083 1.1609 -3.4845 29 1 2.2490 -1.6317 1.1527 30 1 2.6292 0.8869 5.0678 31 1 3.5379 -1.0498 6.6901 32 1 4.1477 -3.7299 6.3840 33 1 3.5948 -4.5276 3.4721 34 1 4.7184 -7.8255 4.5279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059209.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:38 Heat of formation + Delta-G solvation = -103.586183 kcal Electronic energy + Delta-G solvation = -20456.405668 eV Core-core repulsion = 16935.317825 eV Total energy + Delta-G solvation = -3521.087843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.63612 -40.39636 -38.82760 -36.48511 -35.02940 -34.33977 -33.16419 -32.45450 -29.96906 -28.60517 -25.53422 -25.27988 -22.91398 -21.78712 -21.08489 -19.89035 -19.66532 -18.63878 -18.22595 -17.07125 -16.41884 -16.22309 -15.82864 -15.57741 -15.32050 -14.46039 -14.14128 -14.03226 -13.66702 -13.16024 -13.01519 -12.73187 -12.56477 -12.48495 -11.94270 -11.79942 -11.17483 -11.02863 -11.00952 -10.94640 -10.84419 -10.42236 -10.29299 -10.03406 -9.60400 -9.14868 -8.63718 -8.37015 -8.03684 -6.18068 -4.27991 0.01148 1.44384 2.23266 2.47029 2.82390 2.84931 3.23680 3.28887 3.30136 3.60165 3.81191 4.31139 4.47785 4.66844 4.75628 4.95524 5.10830 5.15128 5.38424 5.57680 5.63137 5.81310 5.86982 6.05865 6.23587 6.69279 6.76528 6.86269 7.03718 7.24169 7.44126 7.51839 7.61363 7.80897 8.05267 8.45155 8.62722 8.86252 9.39162 10.87981 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.004041 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.516577 B = 6927.961384 C = 8472.158220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.689 5.689 13 C 0.580 3.420 14 O -0.527 6.527 15 C -0.025 4.025 16 C -0.147 4.147 17 C -0.160 4.160 18 C -0.010 4.010 19 C 0.031 3.969 20 C -0.192 4.192 21 C 0.515 3.485 22 O -0.523 6.523 23 O -0.500 6.500 24 O -0.149 6.149 25 H 0.093 0.907 26 H 0.029 0.971 27 H 0.016 0.984 28 H 0.266 0.734 29 H 0.395 0.605 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.173 -10.262 14.731 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.335 5.335 13 C 0.363 3.637 14 O -0.406 6.406 15 C -0.079 4.079 16 C -0.167 4.167 17 C -0.179 4.179 18 C -0.061 4.061 19 C 0.013 3.987 20 C -0.211 4.211 21 C 0.361 3.639 22 O -0.414 6.414 23 O -0.310 6.310 24 O -0.044 6.044 25 H 0.112 0.888 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.228 0.772 30 H 0.183 0.817 31 H 0.181 0.819 32 H 0.181 0.819 33 H 0.166 0.834 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.791 -9.176 14.398 17.732 hybrid contribution 0.619 -1.387 -0.499 1.599 sum 5.410 -10.563 13.898 18.276 Atomic orbital electron populations 1.22100 0.97991 0.99435 1.01188 1.18908 0.91347 0.94106 0.79490 0.92884 1.21147 1.32845 1.13442 0.90142 0.91938 1.24876 0.94684 0.94914 0.99077 1.69882 1.35602 1.22357 1.24177 0.86468 0.79213 0.79600 0.81608 1.20079 1.21061 1.20103 1.46591 1.62984 1.13933 1.10041 1.16753 0.79437 0.86100 0.81368 1.90848 1.51902 1.14172 1.83677 1.23409 1.05337 0.81042 0.98148 1.22099 1.02143 1.01387 0.91104 1.22245 1.03455 0.91215 1.01007 1.20918 1.06846 0.95447 0.82908 1.21601 0.90730 0.86706 0.99645 1.22294 1.06540 0.89771 1.02540 1.20836 0.74336 0.85572 0.83141 1.90944 1.46155 1.85277 1.19037 1.85090 1.79945 1.22151 1.43838 1.84101 1.63079 1.27146 1.30047 0.88804 0.95223 0.96467 0.92382 0.77176 0.81667 0.81947 0.81918 0.83414 0.73305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.56 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.39 11.32 55.43 0.63 -23.77 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 12 N -0.69 -14.40 5.07 -56.13 -0.28 -14.69 16 13 C 0.58 11.70 7.76 -12.70 -0.10 11.60 16 14 O -0.53 -12.24 16.53 5.24 0.09 -12.15 16 15 C -0.02 -0.40 7.16 -36.21 -0.26 -0.66 16 16 C -0.15 -1.98 10.64 -39.19 -0.42 -2.40 16 17 C -0.16 -1.71 10.88 -39.04 -0.42 -2.14 16 18 C -0.01 -0.12 7.02 -36.40 -0.26 -0.37 16 19 C 0.03 0.30 9.64 -37.38 -0.36 -0.07 16 20 C -0.19 -1.89 9.80 -37.43 -0.37 -2.25 16 21 C 0.51 5.12 8.23 33.92 0.28 5.40 16 22 O -0.52 -6.31 16.97 -19.37 -0.33 -6.63 16 23 O -0.50 -4.01 13.56 -41.13 -0.56 -4.57 16 24 O -0.15 -2.13 10.01 3.87 0.04 -2.09 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.40 7.35 8.29 -40.82 -0.34 7.01 16 30 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.16 1.22 7.52 -52.49 -0.39 0.83 16 33 H 0.15 1.45 7.78 -52.48 -0.41 1.05 16 34 H 0.41 1.43 8.98 45.56 0.41 1.84 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -31.79 315.96 -5.48 -37.27 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -2.67 Total: 6.92 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.13 Total: -0.39 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.34 Total: -38.45 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.76 Total: -25.44 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.79 -5.48 -37.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059209.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.314 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds