Wall clock time and date at job start Tue Mar 31 2020 00:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.34773 * 119.99910 * 275.00232 * 12 2 1 14 14 O 1.21646 * 120.00452 * 359.97438 * 13 12 2 15 15 C 1.47032 * 120.00165 * 179.97438 * 13 12 2 16 16 C 1.37725 * 125.77230 * 179.70999 * 15 13 12 17 17 C 1.39799 * 106.90285 * 179.90410 * 16 15 13 18 18 C 1.38116 * 106.83320 * 0.36000 * 17 16 15 19 19 C 1.46277 * 125.82763 * 179.77865 * 18 17 16 20 20 C 1.35356 * 120.00312 * 179.97438 * 19 18 17 21 21 C 1.46173 * 120.00486 * 179.97438 * 20 19 18 22 22 O 1.21633 * 119.99968 * 0.02562 * 21 20 19 23 23 O 1.34933 * 119.99999 * 180.02562 * 21 20 19 24 24 O 1.34586 * 108.34317 * 359.77561 * 18 17 16 25 25 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 28 28 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 29 29 H 0.96995 * 120.00293 * 94.99410 * 12 2 1 30 30 H 1.08001 * 126.54771 * 0.02562 * 16 15 13 31 31 H 1.07998 * 126.58415 * 180.13303 * 17 16 15 32 32 H 1.08000 * 120.00026 * 359.97087 * 19 18 17 33 33 H 1.08008 * 119.99484 * 0.02562 * 20 19 18 34 34 H 0.96698 * 113.99480 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8581 1.1621 2.4117 15 6 2.6366 -0.7114 3.5578 16 6 2.8183 -0.1418 4.7985 17 6 3.2915 -1.1500 5.6434 18 6 3.3884 -2.2978 4.8812 19 6 3.8471 -3.6037 5.3544 20 6 3.8949 -4.6539 4.5019 21 6 4.3538 -5.9588 4.9746 22 8 4.6923 -6.1010 6.1342 23 8 4.4019 -7.0056 4.1245 24 8 2.9888 -2.0095 3.6288 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7083 1.1609 -3.4845 29 1 2.2490 -1.6317 1.1527 30 1 2.6292 0.8869 5.0678 31 1 3.5379 -1.0498 6.6901 32 1 4.1477 -3.7299 6.3840 33 1 3.5948 -4.5276 3.4721 34 1 4.7184 -7.8255 4.5279 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059209.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:38 Heat of formation + Delta-G solvation = -126.229164 kcal Electronic energy + Delta-G solvation = -20457.387541 eV Core-core repulsion = 16935.317825 eV Total energy + Delta-G solvation = -3522.069717 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.68389 -41.15334 -40.47133 -37.20389 -36.87601 -35.20105 -34.45752 -34.07570 -31.50979 -29.99682 -27.37835 -26.50545 -24.15445 -22.78639 -22.53181 -21.37918 -20.64401 -19.85188 -19.26751 -18.01452 -17.82259 -17.52617 -17.21769 -16.67260 -16.58939 -16.12508 -15.66526 -15.15171 -14.86648 -14.46932 -14.26010 -14.12715 -13.74756 -13.63594 -13.33645 -13.04589 -12.91272 -12.77172 -12.65182 -12.30587 -12.18056 -11.81659 -11.78934 -11.29234 -11.16145 -11.03249 -10.62631 -9.98158 -9.25438 -8.19802 -6.37684 -0.88277 0.37342 1.33862 1.39775 1.45916 1.47394 1.55415 2.02958 2.12317 2.14119 2.30388 2.50847 3.10915 3.51648 3.76787 3.85159 4.05829 4.23890 4.48031 4.56572 4.70236 4.72454 4.88404 4.92361 5.03334 5.08295 5.32500 5.34269 5.47358 5.48053 5.59390 5.72579 5.88083 6.04106 6.65806 6.75004 6.88278 7.16159 7.36292 8.86490 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.004041 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.516577 B = 6927.961384 C = 8472.158220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.008 0.992 4 C -0.552 4.552 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.690 5.690 13 C 0.582 3.418 14 O -0.569 6.569 15 C -0.069 4.069 16 C -0.130 4.130 17 C -0.149 4.149 18 C 0.002 3.998 19 C 0.037 3.963 20 C -0.193 4.193 21 C 0.522 3.478 22 O -0.545 6.545 23 O -0.500 6.500 24 O -0.160 6.160 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.016 0.984 28 H 0.267 0.733 29 H 0.406 0.594 30 H 0.173 0.827 31 H 0.206 0.794 32 H 0.189 0.811 33 H 0.145 0.855 34 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.316 -12.432 16.170 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.026 0.974 4 C -0.590 4.590 5 H 0.090 0.910 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.338 5.338 13 C 0.368 3.632 14 O -0.451 6.451 15 C -0.122 4.122 16 C -0.150 4.150 17 C -0.168 4.168 18 C -0.050 4.050 19 C 0.019 3.981 20 C -0.212 4.212 21 C 0.369 3.631 22 O -0.438 6.438 23 O -0.313 6.313 24 O -0.056 6.056 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.241 0.759 30 H 0.190 0.810 31 H 0.223 0.777 32 H 0.206 0.794 33 H 0.163 0.837 34 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 5.946 -11.395 15.852 20.408 hybrid contribution 0.321 -0.826 -0.827 1.212 sum 6.267 -12.221 15.025 20.356 Atomic orbital electron populations 1.21923 0.97767 0.99690 1.00050 1.18514 0.91508 0.92205 0.81156 0.97383 1.21470 1.33042 1.13766 0.90734 0.91006 1.25765 0.94724 0.95528 1.02196 1.70026 1.36650 1.23749 1.24872 0.85385 0.78647 0.78709 0.77542 1.18929 1.20948 1.19614 1.46312 1.63602 1.14327 1.09520 1.17116 0.78246 0.85764 0.82054 1.90805 1.53637 1.16002 1.84693 1.22512 1.10005 0.82358 0.97325 1.22405 0.99953 1.02277 0.90383 1.22667 1.02211 0.89415 1.02496 1.21519 1.04829 0.96667 0.81951 1.21808 0.90306 0.85331 1.00606 1.22395 1.06056 0.90144 1.02587 1.20754 0.73718 0.85850 0.82797 1.90942 1.47287 1.85680 1.19902 1.85057 1.79619 1.22896 1.43681 1.84055 1.63664 1.26183 1.31649 0.90959 0.94082 0.96484 0.92343 0.75871 0.80972 0.77667 0.79367 0.83722 0.71018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.84 9.26 71.98 0.67 -6.17 16 2 C 0.27 13.97 2.56 44.25 0.11 14.09 16 3 H 0.01 0.50 7.58 -2.39 -0.02 0.48 16 4 C -0.55 -29.23 8.73 25.60 0.22 -29.01 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -51.83 11.32 21.45 0.24 -51.59 16 8 Si 0.97 41.65 29.54 68.60 2.03 43.67 16 9 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 12 N -0.69 -29.78 5.07 -449.74 -2.28 -32.06 16 13 C 0.58 24.26 7.76 86.55 0.67 24.93 16 14 O -0.57 -27.72 16.53 -4.18 -0.07 -27.78 16 15 C -0.07 -2.20 7.16 24.46 0.18 -2.02 16 16 C -0.13 -3.28 10.64 22.53 0.24 -3.04 16 17 C -0.15 -2.66 10.88 22.62 0.25 -2.41 16 18 C 0.00 0.03 7.02 24.33 0.17 0.20 16 19 C 0.04 0.58 9.64 23.70 0.23 0.81 16 20 C -0.19 -3.30 9.80 23.67 0.23 -3.07 16 21 C 0.52 9.08 8.23 69.88 0.57 9.66 16 22 O -0.54 -11.76 16.97 19.40 0.33 -11.43 16 23 O -0.50 -6.80 13.56 -58.49 -0.79 -7.59 16 24 O -0.16 -4.38 10.01 -9.06 -0.09 -4.47 16 25 H 0.07 3.96 6.07 -2.39 -0.01 3.94 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.41 15.38 8.29 -92.71 -0.77 14.61 16 30 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.19 2.01 7.52 -2.91 -0.02 1.99 16 33 H 0.14 2.59 7.78 -2.91 -0.02 2.56 16 34 H 0.43 1.91 8.98 -74.06 -0.67 1.25 16 Total: -1.00 -70.56 315.96 3.09 -67.48 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.27 Total: 18.37 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 3.99 Total: 5.39 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.04 Total: -83.65 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.62 Total: -51.27 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -70.56 3.09 -67.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059209.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.754 kcal (2) G-P(sol) polarization free energy of solvation -70.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds