Wall clock time and date at job start Tue Mar 31 2020 00:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.47204 * 2 1 4 4 C 1.50703 * 109.46859 * 239.99868 * 2 1 3 5 5 H 1.07998 * 120.00482 * 239.99426 * 4 2 1 6 6 C 1.37878 * 119.99778 * 60.00516 * 4 2 1 7 7 N 1.31516 * 120.00134 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99976 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.46858 * 89.99723 * 8 6 4 10 10 H 1.48495 * 109.46821 * 209.99856 * 8 6 4 11 11 H 1.48498 * 109.46748 * 329.99912 * 8 6 4 12 12 N 1.46502 * 109.46949 * 120.00642 * 2 1 3 13 13 C 1.34782 * 119.99236 * 274.99367 * 12 2 1 14 14 O 1.21765 * 120.00632 * 0.02562 * 13 12 2 15 15 C 1.41636 * 119.99571 * 180.02562 * 13 12 2 16 16 C 1.35522 * 119.99920 * 188.30474 * 15 13 12 17 17 C 1.41761 * 120.00522 * 29.73099 * 16 15 13 18 18 C 1.36442 * 125.68057 * 186.58399 * 17 16 15 19 19 C 1.41742 * 106.59502 * 180.30024 * 18 17 16 20 20 C 1.47354 * 126.76961 * 179.74296 * 19 18 17 21 21 O 1.21517 * 120.00010 * 359.97438 * 20 19 18 22 22 O 1.34756 * 119.99792 * 179.97438 * 20 19 18 23 23 C 1.37928 * 106.45775 * 359.57830 * 19 18 17 24 24 O 1.33576 * 108.38974 * 0.42509 * 23 19 18 25 25 H 1.08994 * 109.47166 * 299.99609 * 1 2 3 26 26 H 1.09001 * 109.47040 * 60.00186 * 1 2 3 27 27 H 1.09003 * 109.47271 * 179.97438 * 1 2 3 28 28 H 0.97002 * 120.00080 * 180.02562 * 7 6 4 29 29 H 0.96996 * 120.00407 * 94.99806 * 12 2 1 30 30 H 1.07999 * 119.99878 * 8.30490 * 15 13 12 31 31 H 1.08009 * 120.00005 * 209.73492 * 16 15 13 32 32 H 1.07999 * 126.70285 * 0.03799 * 18 17 16 33 33 H 0.96706 * 116.99787 * 179.97438 * 22 20 19 34 34 H 1.07998 * 125.80374 * 180.17559 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1120 11 1 3.6307 -1.7566 -3.7120 12 7 2.0183 -0.6908 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8572 1.1630 2.4120 15 6 2.6197 -0.6859 3.5134 16 6 2.5910 -0.0613 4.7158 17 6 1.5937 0.9090 4.9869 18 6 1.5304 1.6955 6.1000 19 6 0.3766 2.5064 5.9577 20 6 -0.1152 3.5160 6.9117 21 8 0.4888 3.7193 7.9464 22 8 -1.2347 4.2139 6.6368 23 6 -0.1931 2.1666 4.7484 24 8 0.5490 1.2079 4.1876 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7082 1.1610 -3.4844 29 1 2.2490 -1.6319 1.1525 30 1 3.0029 -1.6928 3.4369 31 1 3.3280 -0.3028 5.4675 32 1 2.2218 1.6968 6.9297 33 1 -1.5184 4.8651 7.2930 34 1 -1.0891 2.5990 4.3284 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061352.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:48 Heat of formation + Delta-G solvation = -86.483729 kcal Electronic energy + Delta-G solvation = -21005.829726 eV Core-core repulsion = 17485.483501 eV Total energy + Delta-G solvation = -3520.346225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.64422 -39.95738 -39.03000 -36.17883 -35.05782 -33.81437 -33.03109 -32.37618 -29.69713 -28.38618 -25.26610 -24.63731 -24.04590 -21.49466 -21.03725 -20.01724 -19.26170 -17.97039 -17.83538 -16.47918 -16.30339 -16.03682 -15.74454 -15.35328 -15.15400 -14.46760 -14.25994 -13.84489 -13.58103 -13.17924 -12.89780 -12.61702 -12.39514 -12.16664 -11.75318 -11.65639 -11.10899 -10.96359 -10.83852 -10.73380 -10.35209 -10.24798 -10.22304 -9.85437 -9.11239 -9.03626 -8.55149 -8.02611 -7.70431 -6.12675 -4.21846 0.51507 1.20708 2.55454 2.79051 3.06591 3.10100 3.23651 3.30619 3.32779 3.99959 4.23295 4.46714 4.58061 4.72288 4.96207 5.19619 5.26947 5.43892 5.52106 5.71771 5.91135 6.02038 6.16521 6.29835 6.36986 6.83887 6.97832 7.06884 7.16279 7.47380 7.57980 7.70329 7.77944 7.92561 8.15295 8.68026 8.78511 9.15015 9.45966 10.93227 Molecular weight = 279.10amu Principal moments of inertia in cm(-1) A = 0.033704 B = 0.003609 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.574470 B = 7755.536429 C = 8389.293990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.702 5.702 13 C 0.522 3.478 14 O -0.544 6.544 15 C -0.190 4.190 16 C -0.025 4.025 17 C 0.019 3.981 18 C -0.131 4.131 19 C -0.246 4.246 20 C 0.560 3.440 21 O -0.521 6.521 22 O -0.515 6.515 23 C 0.074 3.926 24 O -0.109 6.109 25 H 0.015 0.985 26 H 0.089 0.911 27 H 0.025 0.975 28 H 0.264 0.736 29 H 0.388 0.612 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.414 0.586 34 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.720 -0.457 16.038 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.349 5.349 13 C 0.310 3.690 14 O -0.426 6.426 15 C -0.211 4.211 16 C -0.045 4.045 17 C -0.030 4.030 18 C -0.150 4.150 19 C -0.249 4.249 20 C 0.405 3.595 21 O -0.411 6.411 22 O -0.327 6.327 23 C -0.001 4.001 24 O 0.001 5.999 25 H 0.034 0.966 26 H 0.107 0.893 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.221 0.779 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.179 0.821 33 H 0.272 0.728 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -1.757 0.101 15.559 15.658 hybrid contribution 0.283 -0.358 -0.388 0.599 sum -1.474 -0.257 15.171 15.245 Atomic orbital electron populations 1.22045 0.98406 0.99015 1.00817 1.18716 0.91014 0.93990 0.80073 0.93371 1.21243 1.32417 1.13191 0.90436 0.92128 1.24889 0.94836 0.94934 0.99055 1.69903 1.35921 1.22442 1.23839 0.86455 0.79168 0.79276 0.82243 1.20559 1.21074 1.19867 1.46515 1.64162 1.13214 1.11039 1.17115 0.79733 0.87699 0.84447 1.90801 1.50526 1.15791 1.85435 1.22556 1.04883 1.00038 0.93654 1.20531 0.93510 0.92307 0.98143 1.19420 0.91934 1.01606 0.90011 1.21786 0.97747 0.95746 0.99712 1.19481 1.02185 1.05228 0.97957 1.19791 0.77255 0.78509 0.83932 1.90879 1.57453 1.66107 1.26663 1.84572 1.42505 1.52328 1.53251 1.25273 0.95843 0.87926 0.91035 1.84423 1.30605 1.43354 1.41498 0.96584 0.89270 0.95610 0.92605 0.77939 0.84585 0.82495 0.82115 0.72766 0.76597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.67 2.56 -69.08 -0.18 6.50 16 3 H 0.05 1.41 7.58 -51.94 -0.39 1.02 16 4 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -14.45 5.06 -57.83 -0.29 -14.74 16 13 C 0.52 10.20 6.99 -14.96 -0.10 10.10 16 14 O -0.54 -12.51 12.73 -19.59 -0.25 -12.76 16 15 C -0.19 -2.68 9.75 -39.26 -0.38 -3.06 16 16 C -0.02 -0.31 9.77 -39.21 -0.38 -0.69 16 17 C 0.02 0.28 6.00 -38.88 -0.23 0.05 16 18 C -0.13 -1.74 10.64 -38.89 -0.41 -2.15 16 19 C -0.25 -3.33 6.16 -104.96 -0.65 -3.98 16 20 C 0.56 7.13 8.33 34.44 0.29 7.41 16 21 O -0.52 -7.88 17.72 -19.28 -0.34 -8.23 16 22 O -0.51 -4.77 13.27 -40.64 -0.54 -5.31 16 23 C 0.07 1.01 11.98 30.62 0.37 1.37 16 24 O -0.11 -1.81 7.20 -18.76 -0.14 -1.94 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 6.85 8.50 -40.82 -0.35 6.50 16 30 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 32 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.41 1.85 9.11 45.56 0.42 2.26 16 34 H 0.22 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -34.58 309.44 -5.74 -40.32 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -2.72 Total: 7.04 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.74 Total: -0.39 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.33 Total: -38.91 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -1.27 Total: -28.25 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.58 -5.74 -40.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061352.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.159 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds