Wall clock time and date at job start Tue Mar 31 2020 01:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99648 * 2 1 4 4 H 1.48500 * 109.47282 * 264.79560 * 3 2 1 5 5 H 1.48500 * 109.47405 * 24.79322 * 3 2 1 6 6 H 1.48500 * 109.47438 * 144.79668 * 3 2 1 7 7 C 1.37871 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99879 * 3.19371 * 7 2 1 9 9 C 1.50701 * 120.00149 * 183.19775 * 7 2 1 10 10 O 1.42903 * 110.64624 * 61.95952 * 9 7 2 11 11 C 1.54592 * 110.72774 * 185.11643 * 9 7 2 12 12 C 1.53992 * 105.14539 * 140.48883 * 11 9 7 13 13 N 1.47904 * 107.05617 * 1.22617 * 12 11 9 14 14 C 1.38461 * 111.00111 * 214.15218 * 13 12 11 15 15 C 1.39615 * 120.04287 * 59.89624 * 14 13 12 16 16 C 1.38274 * 118.03484 * 179.70178 * 15 14 13 17 17 C 1.40122 * 117.98933 * 0.52983 * 16 15 14 18 18 C 1.47735 * 120.09588 * 179.73073 * 17 16 15 19 19 O 1.21475 * 120.00456 * 359.72653 * 18 17 16 20 20 O 1.34730 * 119.99940 * 179.45260 * 18 17 16 21 21 N 1.32798 * 119.80227 * 359.46438 * 17 16 15 22 22 N 1.28352 * 122.09693 * 0.27095 * 21 17 16 23 23 C 1.48535 * 105.81975 * 334.66921 * 13 12 11 24 24 H 0.97003 * 120.00206 * 359.97438 * 1 2 3 25 25 H 0.96694 * 113.99499 * 61.69961 * 10 9 7 26 26 H 1.09006 * 110.30887 * 21.56978 * 11 9 7 27 27 H 1.09003 * 110.39057 * 259.45380 * 11 9 7 28 28 H 1.08999 * 109.91866 * 241.87230 * 12 11 9 29 29 H 1.09001 * 110.08221 * 120.66327 * 12 11 9 30 30 H 1.08004 * 120.98195 * 359.97438 * 15 14 13 31 31 H 1.07993 * 121.00577 * 180.28163 * 16 15 14 32 32 H 0.96704 * 116.99737 * 180.28239 * 20 18 17 33 33 H 1.09004 * 110.66637 * 157.64142 * 23 13 12 34 34 H 1.08995 * 110.66587 * 280.76953 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3958 2.6820 0.5871 6 1 3.4873 1.4746 0.8071 7 6 2.0045 -1.1940 -0.0005 8 1 1.4658 -2.1285 -0.0531 9 6 3.5098 -1.1950 0.0723 10 8 3.9556 -0.6004 1.2928 11 6 4.0635 -2.6312 -0.0709 12 6 5.3224 -2.4916 -0.9468 13 7 5.4820 -1.0530 -1.2508 14 6 6.0090 -0.8690 -2.5179 15 6 5.3272 -1.3538 -3.6356 16 6 5.8880 -1.1416 -4.8816 17 6 7.1122 -0.4627 -4.9447 18 6 7.7559 -0.2160 -6.2513 19 8 7.2266 -0.6061 -7.2726 20 8 8.9275 0.4467 -6.3106 21 7 7.6893 -0.0371 -3.8269 22 7 7.1641 -0.2306 -2.6719 23 6 4.1221 -0.4643 -1.1492 24 1 -0.4850 0.8401 0.0004 25 1 3.6633 -1.0674 2.0875 26 1 3.3307 -3.2721 -0.5611 27 1 4.3257 -3.0363 0.9066 28 1 5.1957 -3.0547 -1.8714 29 1 6.1963 -2.8562 -0.4069 30 1 4.3872 -1.8753 -3.5305 31 1 5.3994 -1.4920 -5.7786 32 1 9.3081 0.5878 -7.1883 33 1 4.1800 0.6087 -0.9663 34 1 3.5450 -0.6714 -2.0504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610620879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:29 Heat of formation + Delta-G solvation = -43.988110 kcal Electronic energy + Delta-G solvation = -21681.168367 eV Core-core repulsion = 18194.957641 eV Total energy + Delta-G solvation = -3486.210726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56542 -40.21698 -38.87307 -36.47915 -35.54997 -33.37060 -32.53081 -32.33445 -29.60272 -28.66730 -26.06814 -24.81600 -24.01950 -22.61757 -21.17109 -19.86988 -19.03160 -17.89259 -17.49802 -17.34623 -16.95280 -16.22331 -15.42412 -14.99246 -14.70227 -14.65515 -14.27209 -13.93331 -13.51820 -13.43817 -12.95916 -12.63951 -12.47988 -12.04180 -11.90427 -11.75232 -11.48260 -11.06250 -11.01865 -10.68054 -10.51543 -10.41180 -10.20092 -10.07164 -9.78118 -9.11428 -8.81646 -8.54723 -8.33448 -6.32338 -4.45528 0.04151 0.57014 2.02110 2.44288 3.21177 3.30419 3.31851 3.42128 3.58977 3.99064 4.32652 4.37514 4.40774 4.65578 4.74810 4.96727 5.05737 5.20895 5.28360 5.40966 5.57592 5.63493 5.67864 5.90227 5.98755 6.03984 6.24353 6.34469 6.55723 6.71225 6.96901 7.13616 7.41314 7.47977 8.10486 8.46471 8.64418 8.89598 9.31289 10.77647 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.004864 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.975102 B = 5755.718966 C = 6065.820058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.091 3.909 3 Si 0.863 3.137 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.221 1.221 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.229 3.771 10 O -0.565 6.565 11 C -0.144 4.144 12 C 0.049 3.951 13 N -0.478 5.478 14 C 0.289 3.711 15 C -0.156 4.156 16 C -0.049 4.049 17 C 0.008 3.992 18 C 0.556 3.444 19 O -0.505 6.505 20 O -0.489 6.489 21 N -0.168 5.168 22 N -0.222 5.222 23 C 0.049 3.951 24 H 0.268 0.732 25 H 0.364 0.636 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.416 0.584 33 H 0.083 0.917 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.947 -3.691 -9.076 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.115 4.115 3 Si 0.690 3.310 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.143 1.143 7 C -0.594 4.594 8 H 0.099 0.901 9 C 0.189 3.811 10 O -0.371 6.371 11 C -0.182 4.182 12 C -0.077 4.077 13 N -0.202 5.202 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.078 4.078 17 C -0.137 4.137 18 C 0.397 3.603 19 O -0.392 6.392 20 O -0.299 6.299 21 N -0.017 5.017 22 N -0.068 5.068 23 C -0.075 4.075 24 H 0.078 0.922 25 H 0.211 0.789 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.183 0.817 31 H 0.182 0.818 32 H 0.275 0.725 33 H 0.101 0.899 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.392 -2.315 -8.325 15.938 hybrid contribution -1.519 -0.458 -1.627 2.272 sum 11.873 -2.773 -9.952 15.739 Atomic orbital electron populations 1.69910 1.06633 1.27788 1.47601 1.24968 0.94583 0.99603 0.92338 0.87264 0.82318 0.82446 0.78947 1.21244 1.22238 1.14331 1.21311 0.88309 0.95100 1.54652 0.90134 1.19758 0.92678 0.86464 0.82247 1.86546 1.78414 1.56606 1.15519 1.23066 0.94973 1.00547 0.99646 1.22981 1.00278 0.85141 0.99266 1.61727 1.24815 1.13958 1.19679 1.22081 0.91281 0.89843 0.91334 1.23207 1.02539 1.00167 0.92907 1.22275 0.92683 0.93005 0.99808 1.21586 0.95635 1.03024 0.93424 1.19962 0.78729 0.74168 0.87483 1.90933 1.63921 1.48981 1.35320 1.84693 1.35760 1.69572 1.39914 1.73549 1.24466 1.09995 0.93643 1.73391 1.08670 1.10995 1.13747 1.23964 0.83377 1.00417 0.99788 0.92198 0.78940 0.90412 0.90995 0.93727 0.90011 0.81681 0.81847 0.72544 0.89940 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 13.96 55.43 0.77 -24.51 16 2 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 3 Si 0.86 20.92 23.87 -169.99 -4.06 16.86 16 4 H -0.29 -6.83 7.06 56.52 0.40 -6.43 16 5 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.22 -5.35 5.52 56.52 0.31 -5.03 16 7 C -0.56 -13.98 8.83 -34.44 -0.30 -14.28 16 8 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 9 C 0.23 4.84 0.78 -89.91 -0.07 4.77 16 10 O -0.56 -12.11 10.46 -35.23 -0.37 -12.48 16 11 C -0.14 -2.45 6.25 -25.38 -0.16 -2.61 16 12 C 0.05 0.77 6.51 -2.75 -0.02 0.75 16 13 N -0.48 -8.74 5.35 -169.12 -0.90 -9.64 16 14 C 0.29 4.86 5.92 -154.96 -0.92 3.94 16 15 C -0.16 -2.13 7.95 -39.05 -0.31 -2.44 16 16 C -0.05 -0.60 9.71 -38.86 -0.38 -0.98 16 17 C 0.01 0.11 6.83 -82.86 -0.57 -0.46 16 18 C 0.56 6.65 8.32 34.61 0.29 6.93 16 19 O -0.50 -6.63 17.17 -19.25 -0.33 -6.96 16 20 O -0.49 -4.63 13.26 -40.58 -0.54 -5.17 16 21 N -0.17 -2.72 11.30 33.31 0.38 -2.34 16 22 N -0.22 -3.96 11.55 31.21 0.36 -3.60 16 23 C 0.05 1.02 4.24 -1.89 -0.01 1.01 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.36 6.61 9.09 45.56 0.41 7.02 16 26 H 0.08 1.29 7.70 -51.93 -0.40 0.89 16 27 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 28 H 0.04 0.59 6.68 -51.93 -0.35 0.25 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.17 1.97 7.14 -52.48 -0.37 1.60 16 31 H 0.16 1.58 7.71 -52.49 -0.40 1.18 16 32 H 0.42 1.58 9.11 45.56 0.42 2.00 16 33 H 0.08 1.87 4.81 -51.93 -0.25 1.62 16 34 H 0.07 1.33 6.55 -51.93 -0.34 0.99 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -32.51 288.56 -4.65 -37.15 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -1.77 Total: 7.36 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.54 Total: -1.03 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.61 Total: -40.09 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.24 Total: -24.60 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.06 Total: 16.86 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.51 -4.65 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.834 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds