Wall clock time and date at job start Tue Mar 31 2020 01:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99648 * 2 1 4 4 H 1.48500 * 109.47282 * 264.79560 * 3 2 1 5 5 H 1.48500 * 109.47405 * 24.79322 * 3 2 1 6 6 H 1.48500 * 109.47438 * 144.79668 * 3 2 1 7 7 C 1.37871 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99879 * 3.19371 * 7 2 1 9 9 C 1.50701 * 120.00149 * 183.19775 * 7 2 1 10 10 O 1.42903 * 110.64624 * 61.95952 * 9 7 2 11 11 C 1.54592 * 110.72774 * 185.11643 * 9 7 2 12 12 C 1.53992 * 105.14539 * 140.48883 * 11 9 7 13 13 N 1.47904 * 107.05617 * 1.22617 * 12 11 9 14 14 C 1.38461 * 111.00111 * 214.15218 * 13 12 11 15 15 C 1.39615 * 120.04287 * 59.89624 * 14 13 12 16 16 C 1.38274 * 118.03484 * 179.70178 * 15 14 13 17 17 C 1.40122 * 117.98933 * 0.52983 * 16 15 14 18 18 C 1.47735 * 120.09588 * 179.73073 * 17 16 15 19 19 O 1.21475 * 120.00456 * 359.72653 * 18 17 16 20 20 O 1.34730 * 119.99940 * 179.45260 * 18 17 16 21 21 N 1.32798 * 119.80227 * 359.46438 * 17 16 15 22 22 N 1.28352 * 122.09693 * 0.27095 * 21 17 16 23 23 C 1.48535 * 105.81975 * 334.66921 * 13 12 11 24 24 H 0.97003 * 120.00206 * 359.97438 * 1 2 3 25 25 H 0.96694 * 113.99499 * 61.69961 * 10 9 7 26 26 H 1.09006 * 110.30887 * 21.56978 * 11 9 7 27 27 H 1.09003 * 110.39057 * 259.45380 * 11 9 7 28 28 H 1.08999 * 109.91866 * 241.87230 * 12 11 9 29 29 H 1.09001 * 110.08221 * 120.66327 * 12 11 9 30 30 H 1.08004 * 120.98195 * 359.97438 * 15 14 13 31 31 H 1.07993 * 121.00577 * 180.28163 * 16 15 14 32 32 H 0.96704 * 116.99737 * 180.28239 * 20 18 17 33 33 H 1.09004 * 110.66637 * 157.64142 * 23 13 12 34 34 H 1.08995 * 110.66587 * 280.76953 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3958 2.6820 0.5871 6 1 3.4873 1.4746 0.8071 7 6 2.0045 -1.1940 -0.0005 8 1 1.4658 -2.1285 -0.0531 9 6 3.5098 -1.1950 0.0723 10 8 3.9556 -0.6004 1.2928 11 6 4.0635 -2.6312 -0.0709 12 6 5.3224 -2.4916 -0.9468 13 7 5.4820 -1.0530 -1.2508 14 6 6.0090 -0.8690 -2.5179 15 6 5.3272 -1.3538 -3.6356 16 6 5.8880 -1.1416 -4.8816 17 6 7.1122 -0.4627 -4.9447 18 6 7.7559 -0.2160 -6.2513 19 8 7.2266 -0.6061 -7.2726 20 8 8.9275 0.4467 -6.3106 21 7 7.6893 -0.0371 -3.8269 22 7 7.1641 -0.2306 -2.6719 23 6 4.1221 -0.4643 -1.1492 24 1 -0.4850 0.8401 0.0004 25 1 3.6633 -1.0674 2.0875 26 1 3.3307 -3.2721 -0.5611 27 1 4.3257 -3.0363 0.9066 28 1 5.1957 -3.0547 -1.8714 29 1 6.1963 -2.8562 -0.4069 30 1 4.3872 -1.8753 -3.5305 31 1 5.3994 -1.4920 -5.7786 32 1 9.3081 0.5878 -7.1883 33 1 4.1800 0.6087 -0.9663 34 1 3.5450 -0.6714 -2.0504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610620879.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:29 Heat of formation + Delta-G solvation = -72.282997 kcal Electronic energy + Delta-G solvation = -21682.395325 eV Core-core repulsion = 18194.957641 eV Total energy + Delta-G solvation = -3487.437684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.69419 -41.20683 -40.22398 -37.32599 -37.09012 -34.50787 -34.44542 -33.66766 -30.94736 -30.23773 -27.34407 -26.33261 -25.26037 -23.72255 -22.44277 -21.47741 -20.04274 -19.29933 -18.81450 -18.46811 -18.24607 -17.25423 -17.00390 -16.56231 -15.96146 -15.83527 -15.63747 -15.02873 -14.93609 -14.82066 -14.52413 -14.05047 -14.01786 -13.51402 -13.30245 -12.92316 -12.75327 -12.67449 -12.37508 -12.11587 -12.02185 -11.85474 -11.57002 -11.24637 -11.10228 -10.92019 -10.80421 -10.24273 -9.66582 -8.39964 -6.52353 -1.03568 -0.49651 1.03079 1.27279 1.39014 1.56044 1.64058 2.15098 2.22191 2.33796 2.93694 2.98145 3.21658 3.41673 3.53952 3.61225 3.79200 3.88725 4.04629 4.17707 4.35614 4.41062 4.56665 4.63642 4.67348 4.81906 4.95086 5.14837 5.29826 5.31359 5.38449 5.63868 5.86169 6.09232 6.61705 6.77149 7.20435 7.31730 7.37710 8.73678 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025449 B = 0.004864 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.975102 B = 5755.718966 C = 6065.820058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.049 3.951 3 Si 0.914 3.086 4 H -0.283 1.283 5 H -0.304 1.304 6 H -0.222 1.222 7 C -0.543 4.543 8 H 0.056 0.944 9 C 0.222 3.778 10 O -0.576 6.576 11 C -0.136 4.136 12 C 0.053 3.947 13 N -0.490 5.490 14 C 0.270 3.730 15 C -0.150 4.150 16 C -0.035 4.035 17 C 0.007 3.993 18 C 0.565 3.435 19 O -0.516 6.516 20 O -0.488 6.488 21 N -0.188 5.188 22 N -0.253 5.253 23 C 0.053 3.947 24 H 0.267 0.733 25 H 0.376 0.624 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.184 0.816 31 H 0.195 0.805 32 H 0.440 0.560 33 H 0.058 0.942 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.452 -4.515 -10.512 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.153 4.153 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.232 1.232 6 H -0.144 1.144 7 C -0.581 4.581 8 H 0.074 0.926 9 C 0.181 3.819 10 O -0.384 6.384 11 C -0.174 4.174 12 C -0.073 4.073 13 N -0.214 5.214 14 C 0.035 3.965 15 C -0.182 4.182 16 C -0.063 4.063 17 C -0.138 4.138 18 C 0.406 3.594 19 O -0.404 6.404 20 O -0.301 6.301 21 N -0.036 5.036 22 N -0.099 5.099 23 C -0.073 4.073 24 H 0.077 0.923 25 H 0.225 0.775 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.202 0.798 31 H 0.212 0.788 32 H 0.304 0.696 33 H 0.076 0.924 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.951 -3.142 -9.769 18.134 hybrid contribution -1.901 -0.251 -1.252 2.290 sum 13.050 -3.392 -11.021 17.415 Atomic orbital electron populations 1.70013 1.07975 1.28238 1.50517 1.25536 0.94862 1.02102 0.92756 0.86481 0.80893 0.79672 0.78837 1.20943 1.23196 1.14444 1.21597 0.90716 0.93612 1.52183 0.92559 1.19731 0.90323 0.89433 0.82420 1.86506 1.78232 1.57444 1.16197 1.22959 0.95632 0.97688 1.01133 1.23044 0.99848 0.84105 1.00286 1.61524 1.23217 1.15391 1.21315 1.22030 0.91789 0.91165 0.91548 1.23323 1.02812 0.99641 0.92395 1.22593 0.91824 0.91519 1.00360 1.21983 0.96106 1.02162 0.93568 1.19631 0.79157 0.74152 0.86500 1.90938 1.64447 1.49652 1.35354 1.84646 1.34650 1.68620 1.42199 1.73471 1.25108 1.11056 0.93930 1.73282 1.09748 1.11958 1.14896 1.23692 0.85118 0.98949 0.99508 0.92343 0.77531 0.90081 0.89396 0.91186 0.88661 0.79846 0.78789 0.69649 0.92412 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.96 21.44 0.30 -53.79 16 2 C 0.05 2.63 5.47 84.65 0.46 3.10 16 3 Si 0.91 43.85 23.87 68.60 1.64 45.49 16 4 H -0.28 -13.26 7.06 99.48 0.70 -12.56 16 5 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 6 H -0.22 -10.57 5.52 99.48 0.55 -10.02 16 7 C -0.54 -27.22 8.83 25.60 0.23 -27.00 16 8 H 0.06 3.05 7.84 -2.91 -0.02 3.03 16 9 C 0.22 9.09 0.78 -10.33 -0.01 9.08 16 10 O -0.58 -24.03 10.46 -148.98 -1.56 -25.59 16 11 C -0.14 -4.31 6.25 31.47 0.20 -4.11 16 12 C 0.05 1.48 6.51 86.44 0.56 2.04 16 13 N -0.49 -17.07 5.35 -688.96 -3.69 -20.75 16 14 C 0.27 8.58 5.92 133.22 0.79 9.37 16 15 C -0.15 -3.69 7.95 22.61 0.18 -3.51 16 16 C -0.03 -0.75 9.71 22.74 0.22 -0.52 16 17 C 0.01 0.19 6.83 41.97 0.29 0.47 16 18 C 0.56 12.02 8.32 70.33 0.59 12.60 16 19 O -0.52 -12.03 17.17 19.92 0.34 -11.68 16 20 O -0.49 -7.97 13.26 -56.41 -0.75 -8.72 16 21 N -0.19 -5.82 11.30 -48.54 -0.55 -6.37 16 22 N -0.25 -8.77 11.55 -55.17 -0.64 -9.41 16 23 C 0.05 2.12 4.24 86.65 0.37 2.49 16 24 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.38 13.22 9.09 -74.06 -0.67 12.54 16 26 H 0.08 2.51 7.70 -2.38 -0.02 2.49 16 27 H 0.09 2.49 8.08 -2.39 -0.02 2.47 16 28 H 0.07 1.62 6.68 -2.39 -0.02 1.60 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.18 3.76 7.14 -2.91 -0.02 3.74 16 31 H 0.19 2.94 7.71 -2.91 -0.02 2.92 16 32 H 0.44 2.05 9.11 -74.05 -0.67 1.38 16 33 H 0.06 2.58 4.81 -2.38 -0.01 2.57 16 34 H 0.07 2.71 6.55 -2.39 -0.02 2.69 16 Total: -1.00 -70.21 288.56 -1.36 -71.56 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -0.33 Total: 15.24 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 3.87 Total: 4.01 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -4.57 Total: -90.31 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -1.96 Total: -45.99 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.64 Total: 45.49 kcal Total: -70.21 -1.36 -71.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620879.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.722 kcal (2) G-P(sol) polarization free energy of solvation -70.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds