Wall clock time and date at job start Tue Mar 31 2020 01:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00183 * 2 1 4 4 H 1.48495 * 109.47109 * 240.00409 * 3 2 1 5 5 H 1.48502 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00395 * 3 2 1 7 7 C 1.37877 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99866 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00018 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.87650 * 62.39396 * 9 7 2 11 11 C 1.55141 * 110.98909 * 298.54902 * 9 7 2 12 12 C 1.54321 * 103.01782 * 206.25736 * 11 9 7 13 13 N 1.47447 * 107.23508 * 22.28269 * 12 11 9 14 14 C 1.38225 * 111.00244 * 123.26201 * 13 12 11 15 15 N 1.32847 * 120.16990 * 304.95298 * 14 13 12 16 16 C 1.32015 * 119.98372 * 180.27295 * 15 14 13 17 17 C 1.38842 * 120.33618 * 359.45058 * 16 15 14 18 18 N 1.31695 * 120.34557 * 0.27874 * 17 16 15 19 19 C 1.33066 * 120.00814 * 359.97438 * 18 17 16 20 20 C 1.47611 * 120.16173 * 179.97438 * 19 18 17 21 21 O 1.21483 * 119.99551 * 174.72240 * 20 19 18 22 22 O 1.34737 * 120.00388 * 354.72921 * 20 19 18 23 23 C 1.47846 * 108.56477 * 0.99174 * 13 12 11 24 24 H 0.97003 * 119.99747 * 359.97438 * 1 2 3 25 25 H 0.96705 * 113.99853 * 297.61320 * 10 9 7 26 26 H 1.08994 * 110.70574 * 87.87384 * 11 9 7 27 27 H 1.09004 * 110.85484 * 324.70551 * 11 9 7 28 28 H 1.09006 * 109.88841 * 262.87520 * 12 11 9 29 29 H 1.08997 * 109.89333 * 141.68900 * 12 11 9 30 30 H 1.08001 * 119.83130 * 179.73064 * 16 15 14 31 31 H 1.07999 * 119.82409 * 180.29654 * 17 16 15 32 32 H 0.96701 * 117.00241 * 180.02562 * 22 20 19 33 33 H 1.08992 * 110.37333 * 94.73638 * 23 13 12 34 34 H 1.09003 * 110.37566 * 217.07714 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4600 -2.6306 -1.1834 11 6 0.3740 -2.6346 1.2721 12 6 0.2539 -4.1627 1.4506 13 7 1.3921 -4.7761 0.7418 14 6 2.1394 -5.5661 1.5950 15 7 2.6289 -5.0563 2.7198 16 6 3.3468 -5.8127 3.5294 17 6 3.5847 -7.1446 3.2176 18 7 3.1013 -7.6649 2.1086 19 6 2.3801 -6.9136 1.2802 20 6 1.8371 -7.4932 0.0359 21 8 1.1004 -6.8340 -0.6701 22 8 2.1585 -8.7533 -0.3167 23 6 2.2185 -3.6986 0.1571 24 1 -0.4850 0.8401 0.0004 25 1 -0.2256 -1.9547 -1.2752 26 1 -0.6069 -2.1868 1.1136 27 1 0.8675 -2.1837 2.1332 28 1 -0.6839 -4.5138 1.0199 29 1 0.2961 -4.4169 2.5096 30 1 3.7472 -5.3946 4.4411 31 1 4.1691 -7.7571 3.8882 32 1 1.7789 -9.0891 -1.1402 33 1 3.0365 -3.4405 0.8296 34 1 2.6068 -4.0031 -0.8148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610620960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:40 Heat of formation + Delta-G solvation = -56.808988 kcal Electronic energy + Delta-G solvation = -22248.842240 eV Core-core repulsion = 18762.075559 eV Total energy + Delta-G solvation = -3486.766681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45535 -39.47678 -38.41494 -35.86913 -35.10091 -33.92715 -32.13576 -31.52887 -28.73945 -28.22515 -25.90221 -25.05984 -23.51092 -22.00133 -20.53391 -19.66930 -18.48964 -17.55821 -17.29785 -17.08596 -16.35470 -15.73015 -15.04264 -14.89471 -14.83754 -14.38337 -14.00369 -13.82068 -12.99311 -12.84292 -12.61660 -11.97782 -11.87596 -11.66608 -11.40554 -11.27873 -11.19340 -11.02669 -10.80941 -10.50119 -10.46422 -10.39718 -9.96884 -9.44957 -9.24416 -9.14350 -8.61138 -8.12461 -7.95135 -6.21520 -4.29688 0.27767 0.94815 2.59495 2.89345 3.24014 3.28772 3.31674 3.65024 3.83752 4.04415 4.21235 4.30590 4.65676 4.97631 5.05749 5.18045 5.49412 5.59684 5.84939 5.98399 6.00905 6.12925 6.41116 6.53572 6.60772 6.76345 6.99996 7.06585 7.26727 7.43500 7.46495 7.55282 7.67180 7.80434 8.12153 8.13150 8.71397 9.38501 9.52358 10.85637 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.005469 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.190004 B = 5118.590005 C = 5691.784964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.257 3.743 10 O -0.576 6.576 11 C -0.138 4.138 12 C 0.053 3.947 13 N -0.464 5.464 14 C 0.326 3.674 15 N -0.465 5.465 16 C 0.098 3.902 17 C 0.025 3.975 18 N -0.386 5.386 19 C 0.052 3.948 20 C 0.532 3.468 21 O -0.446 6.446 22 O -0.507 6.507 23 C 0.069 3.931 24 H 0.267 0.733 25 H 0.378 0.622 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.175 0.825 31 H 0.177 0.823 32 H 0.410 0.590 33 H 0.058 0.942 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 -12.751 6.290 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.217 3.783 10 O -0.384 6.384 11 C -0.177 4.177 12 C -0.073 4.073 13 N -0.188 5.188 14 C 0.096 3.904 15 N -0.183 5.183 16 C -0.067 4.067 17 C -0.139 4.139 18 N -0.104 5.104 19 C -0.089 4.089 20 C 0.370 3.630 21 O -0.327 6.327 22 O -0.319 6.319 23 C -0.055 4.055 24 H 0.077 0.923 25 H 0.227 0.773 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.192 0.808 31 H 0.194 0.806 32 H 0.268 0.732 33 H 0.076 0.924 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.332 -13.094 5.862 14.986 hybrid contribution 0.241 1.644 0.465 1.726 sum 4.572 -11.450 6.328 13.858 Atomic orbital electron populations 1.69725 1.05916 1.27567 1.50094 1.24976 0.94996 0.99376 0.93609 0.86512 0.79573 0.82314 0.78756 1.20050 1.21110 1.20173 1.21431 0.93464 0.90463 1.52003 0.92160 1.19462 0.86700 0.90012 0.82134 1.86175 1.51310 1.56664 1.44215 1.23247 1.02833 0.90883 1.00751 1.22904 0.92381 0.96840 0.95131 1.61789 1.07461 1.23069 1.26493 1.21165 0.89168 0.91477 0.88568 1.69047 1.07960 1.37428 1.03827 1.24135 0.92244 0.91756 0.98540 1.23798 1.00055 0.95035 0.94983 1.68419 1.03635 1.36385 1.01957 1.20789 1.01417 0.91155 0.95544 1.19913 0.79043 0.79620 0.84428 1.91087 1.31499 1.60022 1.50090 1.84648 1.70844 1.30369 1.45998 1.23133 0.95256 0.88910 0.98215 0.92259 0.77297 0.90044 0.91963 0.90732 0.93762 0.80829 0.80588 0.73248 0.92369 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 10.75 55.43 0.60 -23.19 16 2 C 0.07 1.93 5.29 -17.82 -0.09 1.84 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -14.43 8.27 -34.44 -0.28 -14.71 16 8 H 0.06 1.62 7.79 -52.49 -0.41 1.21 16 9 C 0.26 6.52 0.87 -89.63 -0.08 6.44 16 10 O -0.58 -15.38 13.16 -35.23 -0.46 -15.85 16 11 C -0.14 -3.23 5.37 -24.91 -0.13 -3.37 16 12 C 0.05 1.11 6.69 -2.83 -0.02 1.09 16 13 N -0.46 -9.76 3.12 -169.68 -0.53 -10.29 16 14 C 0.33 5.99 5.15 -154.89 -0.80 5.19 16 15 N -0.46 -7.71 9.23 -11.99 -0.11 -7.82 16 16 C 0.10 1.14 11.22 -17.25 -0.19 0.94 16 17 C 0.03 0.27 11.21 -17.39 -0.19 0.08 16 18 N -0.39 -5.53 10.27 -9.50 -0.10 -5.62 16 19 C 0.05 0.86 6.77 -82.67 -0.56 0.31 16 20 C 0.53 8.80 8.30 34.56 0.29 9.08 16 21 O -0.45 -8.73 15.84 -19.25 -0.31 -9.04 16 22 O -0.51 -6.42 13.26 -40.59 -0.54 -6.96 16 23 C 0.07 1.60 5.81 -2.30 -0.01 1.58 16 24 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.38 10.04 7.56 45.56 0.34 10.38 16 26 H 0.08 2.00 7.54 -51.93 -0.39 1.60 16 27 H 0.06 1.50 8.04 -51.93 -0.42 1.08 16 28 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.04 0.86 7.14 -51.93 -0.37 0.49 16 30 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.41 3.10 9.11 45.56 0.42 3.51 16 33 H 0.06 1.32 7.34 -51.93 -0.38 0.93 16 34 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 296.66 15.07 4.47 4.47 Total: -1.00 -32.22 296.66 -6.12 -38.34 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -2.04 Total: 11.86 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -2.08 Total: 8.47 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.14 Total: -46.93 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.31 Total: -31.85 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.22 -6.12 -38.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.470 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds