Wall clock time and date at job start Tue Mar 31 2020 01:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00183 * 2 1 4 4 H 1.48495 * 109.47109 * 240.00409 * 3 2 1 5 5 H 1.48502 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00395 * 3 2 1 7 7 C 1.37877 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99866 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00018 * 359.97438 * 7 2 1 10 10 O 1.42896 * 110.87650 * 62.39396 * 9 7 2 11 11 C 1.55141 * 110.98909 * 298.54902 * 9 7 2 12 12 C 1.54321 * 103.01782 * 206.25736 * 11 9 7 13 13 N 1.47447 * 107.23508 * 22.28269 * 12 11 9 14 14 C 1.38225 * 111.00244 * 123.26201 * 13 12 11 15 15 N 1.32847 * 120.16990 * 304.95298 * 14 13 12 16 16 C 1.32015 * 119.98372 * 180.27295 * 15 14 13 17 17 C 1.38842 * 120.33618 * 359.45058 * 16 15 14 18 18 N 1.31695 * 120.34557 * 0.27874 * 17 16 15 19 19 C 1.33066 * 120.00814 * 359.97438 * 18 17 16 20 20 C 1.47611 * 120.16173 * 179.97438 * 19 18 17 21 21 O 1.21483 * 119.99551 * 174.72240 * 20 19 18 22 22 O 1.34737 * 120.00388 * 354.72921 * 20 19 18 23 23 C 1.47846 * 108.56477 * 0.99174 * 13 12 11 24 24 H 0.97003 * 119.99747 * 359.97438 * 1 2 3 25 25 H 0.96705 * 113.99853 * 297.61320 * 10 9 7 26 26 H 1.08994 * 110.70574 * 87.87384 * 11 9 7 27 27 H 1.09004 * 110.85484 * 324.70551 * 11 9 7 28 28 H 1.09006 * 109.88841 * 262.87520 * 12 11 9 29 29 H 1.08997 * 109.89333 * 141.68900 * 12 11 9 30 30 H 1.08001 * 119.83130 * 179.73064 * 16 15 14 31 31 H 1.07999 * 119.82409 * 180.29654 * 17 16 15 32 32 H 0.96701 * 117.00241 * 180.02562 * 22 20 19 33 33 H 1.08992 * 110.37333 * 94.73638 * 23 13 12 34 34 H 1.09003 * 110.37566 * 217.07714 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4600 -2.6306 -1.1834 11 6 0.3740 -2.6346 1.2721 12 6 0.2539 -4.1627 1.4506 13 7 1.3921 -4.7761 0.7418 14 6 2.1394 -5.5661 1.5950 15 7 2.6289 -5.0563 2.7198 16 6 3.3468 -5.8127 3.5294 17 6 3.5847 -7.1446 3.2176 18 7 3.1013 -7.6649 2.1086 19 6 2.3801 -6.9136 1.2802 20 6 1.8371 -7.4932 0.0359 21 8 1.1004 -6.8340 -0.6701 22 8 2.1585 -8.7533 -0.3167 23 6 2.2185 -3.6986 0.1571 24 1 -0.4850 0.8401 0.0004 25 1 -0.2256 -1.9547 -1.2752 26 1 -0.6069 -2.1868 1.1136 27 1 0.8675 -2.1837 2.1332 28 1 -0.6839 -4.5138 1.0199 29 1 0.2961 -4.4169 2.5096 30 1 3.7472 -5.3946 4.4411 31 1 4.1691 -7.7571 3.8882 32 1 1.7789 -9.0891 -1.1402 33 1 3.0365 -3.4405 0.8296 34 1 2.6068 -4.0031 -0.8148 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610620960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:40 Heat of formation + Delta-G solvation = -83.236764 kcal Electronic energy + Delta-G solvation = -22249.988234 eV Core-core repulsion = 18762.075559 eV Total energy + Delta-G solvation = -3487.912675 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.64055 -40.69652 -40.03997 -37.18249 -36.69821 -35.17293 -34.20376 -32.94093 -30.30594 -30.07812 -27.05657 -26.84216 -24.94207 -23.12634 -22.16684 -21.58761 -19.64251 -19.27817 -18.53676 -18.28861 -17.91746 -17.02208 -16.91099 -16.53988 -16.06603 -15.73213 -15.58466 -15.19540 -14.51215 -14.49251 -13.98564 -13.78877 -13.65567 -13.23499 -13.02811 -12.81116 -12.67304 -12.53832 -12.40371 -12.28385 -12.25973 -11.90136 -11.76023 -11.22708 -10.64524 -10.51601 -10.34343 -10.14022 -9.51364 -8.22793 -6.39169 -0.84894 -0.13533 1.41548 1.42526 1.42884 1.50662 1.80036 2.36002 2.51849 2.55373 2.99926 3.02116 3.22007 3.44497 3.85299 3.97547 4.05589 4.20323 4.26904 4.30260 4.50159 4.61509 4.71414 4.90602 5.08604 5.15895 5.42001 5.47553 5.56247 5.60329 5.76884 5.97026 6.10655 6.17490 6.53040 6.64351 7.04931 7.31729 7.43033 8.82918 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.025537 B = 0.005469 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.190004 B = 5118.590005 C = 5691.784964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.033 3.967 3 Si 0.962 3.038 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.562 4.562 8 H 0.053 0.947 9 C 0.242 3.758 10 O -0.587 6.587 11 C -0.123 4.123 12 C 0.064 3.936 13 N -0.471 5.471 14 C 0.292 3.708 15 N -0.495 5.495 16 C 0.110 3.890 17 C 0.054 3.946 18 N -0.398 5.398 19 C 0.035 3.965 20 C 0.536 3.464 21 O -0.490 6.490 22 O -0.495 6.495 23 C 0.083 3.917 24 H 0.270 0.730 25 H 0.374 0.626 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.223 0.777 31 H 0.234 0.766 32 H 0.431 0.569 33 H 0.056 0.944 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.125 -13.820 8.462 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.168 4.168 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.600 4.600 8 H 0.071 0.929 9 C 0.202 3.798 10 O -0.394 6.394 11 C -0.163 4.163 12 C -0.062 4.062 13 N -0.194 5.194 14 C 0.064 3.936 15 N -0.213 5.213 16 C -0.055 4.055 17 C -0.111 4.111 18 N -0.116 5.116 19 C -0.103 4.103 20 C 0.376 3.624 21 O -0.375 6.375 22 O -0.309 6.309 23 C -0.042 4.042 24 H 0.080 0.920 25 H 0.222 0.778 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.239 0.761 31 H 0.250 0.750 32 H 0.292 0.708 33 H 0.075 0.925 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.034 -14.214 7.997 17.390 hybrid contribution -0.162 1.831 -0.054 1.839 sum 5.872 -12.383 7.943 15.840 Atomic orbital electron populations 1.69814 1.06834 1.28357 1.49756 1.25680 0.95858 1.02229 0.93020 0.85553 0.78444 0.78560 0.78698 1.20075 1.20355 1.19573 1.21659 0.93363 0.91800 1.53182 0.92875 1.19680 0.87266 0.90694 0.82178 1.86170 1.51390 1.56542 1.45346 1.22982 1.01202 0.92705 0.99371 1.22726 0.92666 0.94776 0.96003 1.61536 1.07671 1.22054 1.28137 1.20963 0.91272 0.91737 0.89656 1.68945 1.09341 1.39009 1.03967 1.25009 0.89875 0.91934 0.98703 1.24785 0.97467 0.95162 0.93674 1.68527 1.03924 1.36153 1.02959 1.20684 1.02503 0.90790 0.96292 1.20045 0.78123 0.80086 0.84173 1.91066 1.33615 1.61270 1.51518 1.84595 1.70420 1.28499 1.47367 1.22827 0.94885 0.88927 0.97610 0.92032 0.77782 0.91752 0.93058 0.91271 0.92275 0.76060 0.75014 0.70760 0.92540 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.12 10.75 21.45 0.23 -48.89 16 2 C 0.03 1.78 5.29 84.65 0.45 2.23 16 3 Si 0.96 42.46 29.54 68.60 2.03 44.49 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.56 -31.04 8.27 25.60 0.21 -30.83 16 8 H 0.05 2.92 7.79 -2.91 -0.02 2.90 16 9 C 0.24 12.69 0.87 -10.15 -0.01 12.68 16 10 O -0.59 -32.72 13.16 -148.98 -1.96 -34.69 16 11 C -0.12 -5.98 5.37 31.78 0.17 -5.81 16 12 C 0.06 2.75 6.69 86.65 0.58 3.33 16 13 N -0.47 -20.29 3.12 -690.75 -2.15 -22.44 16 14 C 0.29 10.61 5.15 133.52 0.69 11.30 16 15 N -0.49 -15.53 9.23 -191.84 -1.77 -17.30 16 16 C 0.11 2.09 11.22 84.81 0.95 3.04 16 17 C 0.05 0.90 11.21 84.86 0.95 1.85 16 18 N -0.40 -10.19 10.27 -183.98 -1.89 -12.08 16 19 C 0.03 1.14 6.77 41.97 0.28 1.42 16 20 C 0.54 17.71 8.30 70.30 0.58 18.30 16 21 O -0.49 -19.80 15.84 19.89 0.32 -19.48 16 22 O -0.50 -11.98 13.26 -56.47 -0.75 -12.73 16 23 C 0.08 3.96 5.81 86.77 0.50 4.46 16 24 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 25 H 0.37 20.77 7.56 -74.05 -0.56 20.21 16 26 H 0.06 3.28 7.54 -2.39 -0.02 3.26 16 27 H 0.05 2.54 8.04 -2.38 -0.02 2.52 16 28 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 29 H 0.06 2.30 7.14 -2.39 -0.02 2.29 16 30 H 0.22 1.96 8.06 -2.91 -0.02 1.93 16 31 H 0.23 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.43 6.02 9.11 -74.06 -0.67 5.35 16 33 H 0.06 2.64 7.34 -2.39 -0.02 2.62 16 34 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -72.79 296.66 -0.65 -73.44 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.06 Total: 27.71 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 5.36 Total: 21.98 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -5.58 Total: -100.72 kcal Atomic # 8 Polarization: -64.50 SS G_CDS: -2.39 Total: -66.89 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -72.79 -0.65 -73.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.801 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds