Wall clock time and date at job start Tue Mar 31 2020 01:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99877 * 2 1 4 4 H 1.48498 * 109.46865 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47166 * 300.00365 * 3 2 1 6 6 H 1.48501 * 109.47172 * 60.00266 * 3 2 1 7 7 C 1.37873 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99705 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99821 * 179.97438 * 10 9 7 12 12 O 1.21582 * 120.00123 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00061 * 180.02562 * 11 10 9 14 14 C 1.39393 * 120.00129 * 185.11161 * 13 11 10 15 15 C 1.39047 * 119.69411 * 174.86602 * 14 13 11 16 16 C 1.38356 * 119.09575 * 180.24901 * 15 14 13 17 17 C 1.38839 * 118.49705 * 359.47969 * 16 15 14 18 18 C 1.38065 * 119.31429 * 0.27470 * 17 16 15 19 19 C 1.50696 * 119.57698 * 179.97438 * 18 17 16 20 20 C 1.50689 * 109.47171 * 125.00031 * 19 18 17 21 21 O 1.20828 * 120.00162 * 0.02562 * 20 19 18 22 22 O 1.34240 * 120.00248 * 179.97438 * 20 19 18 23 23 N 1.31943 * 120.84560 * 359.97438 * 18 17 16 24 24 H 0.97001 * 119.99632 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46918 * 60.00155 * 9 7 2 26 26 H 1.08998 * 109.47384 * 299.99895 * 9 7 2 27 27 H 0.97000 * 119.99816 * 0.02562 * 10 9 7 28 28 H 0.97000 * 120.00055 * 5.10291 * 13 11 10 29 29 H 1.08000 * 120.45442 * 0.02910 * 15 14 13 30 30 H 1.08003 * 120.75045 * 179.75122 * 16 15 14 31 31 H 1.08001 * 120.34056 * 180.29583 * 17 16 15 32 32 H 1.09005 * 109.47186 * 245.00310 * 19 18 17 33 33 H 1.09007 * 109.47087 * 4.99613 * 19 18 17 34 34 H 0.96698 * 117.00293 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5585 -5.1054 -0.0006 13 7 2.6296 -5.9077 -0.0021 14 6 2.1686 -7.2188 -0.1093 15 6 3.0804 -8.2629 -0.2172 16 6 2.6091 -9.5590 -0.3282 17 6 1.2366 -9.7680 -0.3165 18 6 0.3888 -8.6845 -0.2011 19 6 -1.1020 -8.9045 -0.1884 20 6 -1.6916 -8.2786 1.0491 21 8 -0.9748 -7.7115 1.8395 22 8 -3.0132 -8.3501 1.2730 23 7 0.8671 -7.4588 -0.1019 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1567 -3.4353 -0.0021 28 1 3.5808 -5.7326 0.0720 29 1 4.1421 -8.0647 -0.2179 30 1 3.2935 -10.3897 -0.4175 31 1 0.8363 -10.7679 -0.3965 32 1 -1.5444 -8.4467 -1.0732 33 1 -1.3114 -9.9742 -0.1896 34 1 -3.3449 -7.9341 2.0805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:25 Heat of formation + Delta-G solvation = -69.881569 kcal Electronic energy + Delta-G solvation = -20965.915813 eV Core-core repulsion = 17478.582262 eV Total energy + Delta-G solvation = -3487.333550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75564 -39.83654 -38.72656 -35.95747 -34.89744 -33.99902 -32.82685 -32.35950 -31.20817 -28.45400 -26.99902 -23.86018 -23.23408 -22.17524 -21.13092 -20.18276 -18.20300 -17.92963 -17.39959 -16.54977 -16.18321 -16.11519 -15.75954 -15.18422 -14.96759 -14.83741 -14.12352 -13.71972 -13.70358 -13.15283 -12.91820 -12.77205 -12.55580 -12.04969 -11.96180 -11.87542 -11.28753 -10.93375 -10.91469 -10.47449 -10.30570 -10.28831 -9.75651 -9.65306 -9.34317 -8.71027 -8.70509 -8.14469 -7.72408 -6.13954 -4.20626 1.11603 1.43550 2.44979 2.99912 3.10867 3.25189 3.32238 3.35466 3.76873 4.13218 4.24064 4.34255 4.61658 4.90328 5.01341 5.08180 5.15842 5.22249 5.29319 5.37022 5.44577 5.71143 5.93131 6.15359 6.38130 6.67115 6.87051 7.06209 7.49501 7.50491 7.58597 7.78417 8.00519 8.08520 8.28749 8.75930 8.92680 9.33673 9.48559 10.96351 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.003993 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.206399 B = 7010.616504 C = 8108.838110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.268 3.732 10 N -0.726 5.726 11 C 0.678 3.322 12 O -0.532 6.532 13 N -0.675 5.675 14 C 0.397 3.603 15 C -0.218 4.218 16 C -0.047 4.047 17 C -0.210 4.210 18 C 0.162 3.838 19 C -0.057 4.057 20 C 0.478 3.522 21 O -0.482 6.482 22 O -0.525 6.525 23 N -0.447 5.447 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.386 0.614 28 H 0.409 0.591 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 -21.281 -0.943 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.147 3.853 10 N -0.380 5.380 11 C 0.377 3.623 12 O -0.403 6.403 13 N -0.323 5.323 14 C 0.163 3.837 15 C -0.242 4.242 16 C -0.073 4.073 17 C -0.232 4.232 18 C 0.022 3.978 19 C -0.095 4.095 20 C 0.317 3.683 21 O -0.367 6.367 22 O -0.338 6.338 23 N -0.161 5.161 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.218 0.782 28 H 0.244 0.756 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.954 -20.455 -1.002 20.573 hybrid contribution 1.785 0.804 0.514 2.025 sum 3.739 -19.651 -0.487 20.009 Atomic orbital electron populations 1.69995 1.06100 1.27156 1.48979 1.24946 0.94908 0.99405 0.94764 0.86352 0.79783 0.82966 0.77728 1.19665 1.20810 1.20805 1.21252 0.93302 0.90366 1.53072 0.91863 1.19016 0.87714 0.80859 0.97738 1.45786 1.10895 1.04105 1.77169 1.16279 0.85488 0.80861 0.79656 1.91014 1.12935 1.82824 1.53538 1.43029 1.10442 1.03279 1.75581 1.18168 0.88994 0.84428 0.92063 1.21431 1.00085 0.92728 1.09951 1.21198 0.95222 0.96154 0.94680 1.21666 0.94030 0.99480 1.07986 1.20345 0.94424 0.88288 0.94768 1.20112 0.90579 1.02716 0.96083 1.22924 0.79927 0.77756 0.87653 1.90815 1.61050 1.38436 1.46367 1.84464 1.25858 1.74826 1.48645 1.67454 1.13099 1.22218 1.13339 0.92510 0.95624 0.95604 0.78223 0.75565 0.84798 0.84606 0.84944 0.85828 0.86323 0.73139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.27 7.35 5.43 -5.19 -0.03 7.32 16 10 N -0.73 -16.04 5.55 -66.41 -0.37 -16.41 16 11 C 0.68 14.99 8.52 -86.92 -0.74 14.25 16 12 O -0.53 -14.20 14.61 5.29 0.08 -14.12 16 13 N -0.68 -11.25 5.39 -15.81 -0.09 -11.33 16 14 C 0.40 6.54 7.42 -154.72 -1.15 5.39 16 15 C -0.22 -2.55 9.94 -39.24 -0.39 -2.94 16 16 C -0.05 -0.46 10.17 -39.32 -0.40 -0.86 16 17 C -0.21 -2.22 9.70 -39.42 -0.38 -2.60 16 18 C 0.16 2.31 5.76 -82.61 -0.48 1.84 16 19 C -0.06 -0.65 6.21 -29.04 -0.18 -0.83 16 20 C 0.48 6.97 8.26 36.00 0.30 7.27 16 21 O -0.48 -9.44 16.09 -18.75 -0.30 -9.75 16 22 O -0.52 -5.99 13.42 -39.28 -0.53 -6.52 16 23 N -0.45 -8.35 6.75 -8.60 -0.06 -8.41 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.39 7.13 8.34 -40.82 -0.34 6.79 16 28 H 0.41 4.94 8.72 -40.82 -0.36 4.58 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.13 0.92 7.94 -52.49 -0.42 0.51 16 32 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.12 0.81 7.86 -51.92 -0.41 0.40 16 34 H 0.41 3.28 9.10 45.56 0.41 3.70 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -39.79 310.53 -7.49 -47.28 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -2.75 Total: 9.07 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: -3.87 Total: 15.23 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: 0.22 Total: -61.95 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.75 Total: -30.39 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -39.79 -7.49 -47.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.604 kcal (2) G-P(sol) polarization free energy of solvation -39.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds