Wall clock time and date at job start Tue Mar 31 2020 01:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99877 * 2 1 4 4 H 1.48498 * 109.46865 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47166 * 300.00365 * 3 2 1 6 6 H 1.48501 * 109.47172 * 60.00266 * 3 2 1 7 7 C 1.37873 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99705 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46975 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99821 * 179.97438 * 10 9 7 12 12 O 1.21582 * 120.00123 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00061 * 180.02562 * 11 10 9 14 14 C 1.39393 * 120.00129 * 185.11161 * 13 11 10 15 15 C 1.39047 * 119.69411 * 174.86602 * 14 13 11 16 16 C 1.38356 * 119.09575 * 180.24901 * 15 14 13 17 17 C 1.38839 * 118.49705 * 359.47969 * 16 15 14 18 18 C 1.38065 * 119.31429 * 0.27470 * 17 16 15 19 19 C 1.50696 * 119.57698 * 179.97438 * 18 17 16 20 20 C 1.50689 * 109.47171 * 125.00031 * 19 18 17 21 21 O 1.20828 * 120.00162 * 0.02562 * 20 19 18 22 22 O 1.34240 * 120.00248 * 179.97438 * 20 19 18 23 23 N 1.31943 * 120.84560 * 359.97438 * 18 17 16 24 24 H 0.97001 * 119.99632 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46918 * 60.00155 * 9 7 2 26 26 H 1.08998 * 109.47384 * 299.99895 * 9 7 2 27 27 H 0.97000 * 119.99816 * 0.02562 * 10 9 7 28 28 H 0.97000 * 120.00055 * 5.10291 * 13 11 10 29 29 H 1.08000 * 120.45442 * 0.02910 * 15 14 13 30 30 H 1.08003 * 120.75045 * 179.75122 * 16 15 14 31 31 H 1.08001 * 120.34056 * 180.29583 * 17 16 15 32 32 H 1.09005 * 109.47186 * 245.00310 * 19 18 17 33 33 H 1.09007 * 109.47087 * 4.99613 * 19 18 17 34 34 H 0.96698 * 117.00293 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5585 -5.1054 -0.0006 13 7 2.6296 -5.9077 -0.0021 14 6 2.1686 -7.2188 -0.1093 15 6 3.0804 -8.2629 -0.2172 16 6 2.6091 -9.5590 -0.3282 17 6 1.2366 -9.7680 -0.3165 18 6 0.3888 -8.6845 -0.2011 19 6 -1.1020 -8.9045 -0.1884 20 6 -1.6916 -8.2786 1.0491 21 8 -0.9748 -7.7115 1.8395 22 8 -3.0132 -8.3501 1.2730 23 7 0.8671 -7.4588 -0.1019 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5566 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1567 -3.4353 -0.0021 28 1 3.5808 -5.7326 0.0720 29 1 4.1421 -8.0647 -0.2179 30 1 3.2935 -10.3897 -0.4175 31 1 0.8363 -10.7679 -0.3965 32 1 -1.5444 -8.4467 -1.0732 33 1 -1.3114 -9.9742 -0.1896 34 1 -3.3449 -7.9341 2.0805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622195.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:24 Heat of formation + Delta-G solvation = -102.410205 kcal Electronic energy + Delta-G solvation = -20967.326360 eV Core-core repulsion = 17478.582262 eV Total energy + Delta-G solvation = -3488.744098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.89527 -41.09141 -40.13665 -37.07306 -36.42257 -35.84711 -34.38667 -33.76773 -32.39547 -29.73945 -28.78316 -25.35256 -24.41772 -23.73516 -22.21371 -21.77539 -19.88655 -19.06189 -18.64074 -18.06932 -17.57066 -17.13784 -16.91043 -16.67691 -16.60090 -16.25774 -15.74691 -15.05992 -14.95582 -14.73873 -14.14779 -14.06851 -13.81938 -13.72393 -13.34590 -12.87712 -12.84937 -12.76489 -12.45200 -12.22446 -11.74209 -11.52516 -11.46752 -11.38430 -10.82988 -10.64724 -9.94696 -9.89216 -9.10388 -8.30160 -6.47354 0.16136 0.53367 1.33856 1.41853 1.44491 1.56615 1.64487 2.11555 2.30635 2.37443 3.04149 3.05992 3.12518 3.49648 3.86023 4.10649 4.27848 4.34938 4.46844 4.48198 4.56131 4.88449 4.97067 5.11936 5.22409 5.30846 5.40981 5.44922 5.63000 5.69335 5.80873 5.94271 6.04618 6.64030 7.00221 7.06036 7.22681 7.42555 7.72303 8.82759 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.003993 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.206399 B = 7010.616504 C = 8108.838110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.990 3.010 4 H -0.251 1.251 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.288 3.712 10 N -0.719 5.719 11 C 0.679 3.321 12 O -0.587 6.587 13 N -0.660 5.660 14 C 0.346 3.654 15 C -0.201 4.201 16 C -0.043 4.043 17 C -0.187 4.187 18 C 0.125 3.875 19 C -0.056 4.056 20 C 0.476 3.524 21 O -0.543 6.543 22 O -0.515 6.515 23 N -0.509 5.509 24 H 0.269 0.731 25 H -0.015 1.015 26 H -0.019 1.019 27 H 0.405 0.595 28 H 0.429 0.571 29 H 0.169 0.831 30 H 0.186 0.814 31 H 0.178 0.822 32 H 0.125 0.875 33 H 0.172 0.828 34 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.146 -23.457 -1.565 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.165 3.835 10 N -0.374 5.374 11 C 0.378 3.622 12 O -0.462 6.462 13 N -0.311 5.311 14 C 0.114 3.886 15 C -0.224 4.224 16 C -0.069 4.069 17 C -0.208 4.208 18 C -0.014 4.014 19 C -0.093 4.093 20 C 0.319 3.681 21 O -0.432 6.432 22 O -0.329 6.329 23 N -0.223 5.223 24 H 0.078 0.922 25 H 0.003 0.997 26 H -0.001 1.001 27 H 0.241 0.759 28 H 0.269 0.731 29 H 0.187 0.813 30 H 0.203 0.797 31 H 0.196 0.804 32 H 0.143 0.857 33 H 0.189 0.811 34 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 4.667 -22.724 -1.634 23.256 hybrid contribution 0.876 1.253 0.708 1.685 sum 5.543 -21.471 -0.926 22.194 Atomic orbital electron populations 1.70168 1.08413 1.28558 1.49961 1.26116 0.95793 1.04023 0.93760 0.85043 0.79054 0.76969 0.77694 1.17474 1.20319 1.20465 1.21624 0.94385 0.90251 1.52936 0.89582 1.18403 0.88044 0.83296 0.93748 1.45338 1.11032 1.03426 1.77637 1.16454 0.85462 0.81488 0.78820 1.90970 1.15671 1.83803 1.55745 1.42580 1.10545 1.02647 1.75310 1.18637 0.89739 0.84705 0.95476 1.21826 1.01011 0.92167 1.07411 1.21849 0.95769 0.96572 0.92678 1.22208 0.94166 1.00271 1.04187 1.20888 0.96069 0.88173 0.96237 1.20381 0.89353 1.05483 0.94114 1.23695 0.80124 0.76449 0.87853 1.90792 1.62463 1.41255 1.48706 1.84446 1.24560 1.74446 1.49431 1.67222 1.15000 1.25306 1.14801 0.92217 0.99709 1.00118 0.75911 0.73131 0.81347 0.79725 0.80426 0.85733 0.81086 0.71672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.99 43.26 29.54 68.60 2.03 45.29 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.55 -31.22 9.28 25.60 0.24 -30.98 16 8 H 0.09 4.35 7.60 -2.91 -0.02 4.33 16 9 C 0.29 16.86 5.43 85.63 0.46 17.32 16 10 N -0.72 -33.23 5.55 -482.30 -2.68 -35.91 16 11 C 0.68 31.68 8.52 179.06 1.53 33.21 16 12 O -0.59 -33.81 14.61 -3.97 -0.06 -33.87 16 13 N -0.66 -22.41 5.39 -322.21 -1.74 -24.15 16 14 C 0.35 11.39 7.42 132.92 0.99 12.37 16 15 C -0.20 -4.12 9.94 22.49 0.22 -3.89 16 16 C -0.04 -0.65 10.17 22.44 0.23 -0.42 16 17 C -0.19 -3.24 9.70 22.37 0.22 -3.02 16 18 C 0.13 3.46 5.76 42.50 0.24 3.70 16 19 C -0.06 -1.23 6.21 29.10 0.18 -1.05 16 20 C 0.48 14.30 8.26 71.23 0.59 14.88 16 21 O -0.54 -22.60 16.09 21.96 0.35 -22.25 16 22 O -0.52 -11.88 13.42 -51.51 -0.69 -12.57 16 23 N -0.51 -19.57 6.75 -181.13 -1.22 -20.79 16 24 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 27 H 0.41 15.13 8.34 -92.71 -0.77 14.35 16 28 H 0.43 10.11 8.72 -92.71 -0.81 9.30 16 29 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 31 H 0.18 1.38 7.94 -2.91 -0.02 1.36 16 32 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 33 H 0.17 1.74 7.86 -2.38 -0.02 1.72 16 34 H 0.42 7.09 9.10 -74.06 -0.67 6.41 16 Total: -1.00 -95.94 310.53 0.56 -95.38 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: -1.07 Total: 23.88 kcal Atomic # 6 Polarization: 37.37 SS G_CDS: 5.36 Total: 42.73 kcal Atomic # 7 Polarization: -133.24 SS G_CDS: -5.35 Total: -138.59 kcal Atomic # 8 Polarization: -68.28 SS G_CDS: -0.40 Total: -68.68 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -95.94 0.56 -95.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622195.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.032 kcal (2) G-P(sol) polarization free energy of solvation -95.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds