Wall clock time and date at job start Tue Mar 31 2020 01:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86796 * 119.99831 * 2 1 4 4 H 1.48503 * 109.47386 * 89.99931 * 3 2 1 5 5 H 1.48495 * 109.47220 * 209.99976 * 3 2 1 6 6 H 1.48504 * 109.47425 * 330.00132 * 3 2 1 7 7 C 1.38949 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00175 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99511 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99799 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99843 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00178 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47399 * 180.02562 * 12 10 9 14 14 N 1.46495 * 109.47223 * 180.02562 * 13 12 10 15 15 C 1.34747 * 120.00390 * 179.97438 * 14 13 12 16 16 O 1.34277 * 119.99624 * 359.97438 * 15 14 13 17 17 C 1.41516 * 120.00679 * 179.97438 * 15 14 13 18 18 N 1.33557 * 120.01412 * 354.22469 * 17 15 14 19 19 C 1.30913 * 121.62934 * 179.70637 * 18 17 15 20 20 C 1.39487 * 121.49285 * 0.57323 * 19 18 17 21 21 C 1.36515 * 119.85773 * 359.72019 * 20 19 18 22 22 C 1.40990 * 118.47044 * 359.97438 * 21 20 19 23 23 O 1.22425 * 120.71264 * 179.97438 * 22 21 20 24 24 H 0.96998 * 119.99955 * 0.02562 * 1 2 3 25 25 H 0.96996 * 119.99869 * 0.02562 * 9 7 2 26 26 H 1.09004 * 109.46883 * 299.99944 * 12 10 9 27 27 H 1.09005 * 109.47453 * 59.99870 * 12 10 9 28 28 H 1.09004 * 109.46959 * 299.99777 * 13 12 10 29 29 H 1.08991 * 109.47147 * 59.99690 * 13 12 10 30 30 H 0.97000 * 120.00466 * 359.97438 * 14 13 12 31 31 H 0.96705 * 117.00013 * 94.90382 * 16 15 14 32 32 H 1.08004 * 119.24754 * 180.29308 * 19 18 17 33 33 H 1.08004 * 120.07167 * 179.69653 * 20 19 18 34 34 H 1.08006 * 120.76960 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 1.4001 5 1 3.5456 1.4402 -0.7000 6 1 1.4455 2.6527 -0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0000 11 8 3.4473 -3.4209 0.0000 12 6 5.5607 -2.3705 0.0000 13 6 6.0708 -3.8130 -0.0006 14 7 7.5357 -3.8129 0.0000 15 6 8.2096 -4.9798 0.0001 16 8 7.5382 -6.1427 0.0002 17 6 9.6247 -4.9799 0.0001 18 7 10.2928 -3.8293 -0.1163 19 6 11.6014 -3.7920 -0.1143 20 6 12.3633 -4.9550 -0.0021 21 6 11.7429 -6.1654 0.1145 22 6 10.3334 -6.2005 0.1183 23 8 9.7347 -7.2635 0.2203 24 1 -0.4850 0.8400 -0.0004 25 1 3.8648 -0.3632 -0.0004 26 1 5.9240 -1.8566 -0.8900 27 1 5.9241 -1.8566 0.8900 28 1 5.7075 -4.3272 0.8892 29 1 5.7075 -4.3264 -0.8907 30 1 8.0208 -2.9729 0.0003 31 1 7.3825 -6.5598 -0.8583 32 1 12.1024 -2.8396 -0.2061 33 1 13.4419 -4.8981 -0.0079 34 1 12.3183 -7.0751 0.2027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611114062.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:48 Heat of formation + Delta-G solvation = -84.812231 kcal Electronic energy + Delta-G solvation = -20418.811308 eV Core-core repulsion = 16930.830315 eV Total energy + Delta-G solvation = -3487.980992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.83585 -40.53530 -39.87545 -38.02937 -37.04506 -36.07170 -33.87625 -33.61474 -32.11429 -30.31992 -27.55065 -26.08374 -24.41674 -23.18080 -23.05998 -21.32741 -20.38542 -19.64786 -19.02444 -17.93217 -17.59799 -17.09175 -17.00015 -16.78106 -16.41979 -16.02702 -15.45754 -15.33897 -15.09936 -14.80103 -14.62114 -14.08272 -13.99653 -13.44928 -13.32718 -13.10420 -13.09234 -12.82741 -12.79397 -12.42590 -11.99882 -11.68323 -11.54938 -11.44273 -10.58587 -10.48190 -10.29436 -9.79133 -8.44096 -8.40752 -6.06401 -0.91687 0.85256 1.29890 1.33988 1.35010 1.35684 1.45262 1.88127 2.21781 2.52473 2.98978 3.12610 3.18006 3.41047 3.59294 3.95569 3.97130 4.12252 4.22871 4.33631 4.46168 4.50840 4.71862 4.73742 4.83578 5.11074 5.34949 5.42067 5.50252 5.76388 5.84244 5.92289 6.44760 6.52124 6.83082 7.00995 7.22704 7.33660 7.87974 8.73028 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036314 B = 0.003041 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.876243 B = 9206.393307 C = 9950.356771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.225 1.225 6 H -0.279 1.279 7 C -0.332 4.332 8 H 0.057 0.943 9 N -0.584 5.584 10 C 0.451 3.549 11 O -0.626 6.626 12 C -0.134 4.134 13 C 0.113 3.887 14 N -0.616 5.616 15 C 0.570 3.430 16 O -0.479 6.479 17 C -0.222 4.222 18 N -0.420 5.420 19 C 0.029 3.971 20 C -0.062 4.062 21 C -0.255 4.255 22 C 0.348 3.652 23 O -0.583 6.583 24 H 0.280 0.720 25 H 0.393 0.607 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.444 0.556 31 H 0.451 0.549 32 H 0.189 0.811 33 H 0.164 0.836 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.633 0.399 -2.337 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.148 1.148 6 H -0.204 1.204 7 C -0.462 4.462 8 H 0.075 0.925 9 N -0.225 5.225 10 C 0.239 3.761 11 O -0.512 6.512 12 C -0.174 4.174 13 C -0.010 4.010 14 N -0.239 5.239 15 C 0.387 3.613 16 O -0.293 6.293 17 C -0.347 4.347 18 N -0.131 5.131 19 C -0.153 4.153 20 C -0.082 4.082 21 C -0.282 4.282 22 C 0.247 3.753 23 O -0.478 6.478 24 H 0.089 0.911 25 H 0.229 0.771 26 H 0.148 0.852 27 H 0.144 0.856 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.287 0.713 31 H 0.323 0.677 32 H 0.206 0.794 33 H 0.182 0.818 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 22.737 0.009 -1.832 22.810 hybrid contribution 0.241 0.048 -0.271 0.366 sum 22.978 0.057 -2.104 23.074 Atomic orbital electron populations 1.69806 1.08299 1.29389 1.49763 1.26165 0.96452 1.02912 0.95866 0.85372 0.79700 0.76564 0.79933 1.18269 1.14764 1.20393 1.19019 0.81564 0.94958 1.50619 0.92479 1.42019 1.05820 1.07800 1.66832 1.20629 0.90537 0.83316 0.81592 1.90596 1.71781 1.32667 1.56158 1.21629 0.90488 0.97311 1.07942 1.21559 0.75913 0.98302 1.05186 1.45573 1.08782 1.08468 1.61106 1.19381 0.86628 0.80030 0.75250 1.83717 1.75099 1.31897 1.38620 1.19495 0.90854 0.93104 1.31212 1.66992 1.11917 1.26877 1.07301 1.22926 0.88254 0.99571 1.04551 1.22392 1.02866 0.92186 0.90745 1.22912 0.95758 1.00279 1.09256 1.17899 0.90987 0.88764 0.77614 1.90795 1.72926 1.33768 1.50293 0.91090 0.77133 0.85152 0.85590 0.89759 0.88616 0.71286 0.67705 0.79443 0.81818 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.99 13.96 21.66 0.30 -53.69 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.96 35.77 27.74 68.60 1.90 37.67 16 4 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.22 -6.65 6.52 99.48 0.65 -6.01 16 6 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.33 -18.14 10.16 84.04 0.85 -17.28 16 8 H 0.06 3.76 7.39 -2.91 -0.02 3.74 16 9 N -0.58 -24.27 5.09 -306.99 -1.56 -25.83 16 10 C 0.45 17.01 7.78 87.65 0.68 17.69 16 11 O -0.63 -30.30 15.56 -3.06 -0.05 -30.35 16 12 C -0.13 -2.70 5.81 29.85 0.17 -2.53 16 13 C 0.11 2.21 4.97 86.38 0.43 2.64 16 14 N -0.62 -9.59 5.53 -457.37 -2.53 -12.12 16 15 C 0.57 11.75 7.70 85.05 0.65 12.40 16 16 O -0.48 -10.15 10.63 -54.17 -0.58 -10.73 16 17 C -0.22 -5.43 6.61 40.53 0.27 -5.16 16 18 N -0.42 -8.56 9.42 -187.99 -1.77 -10.33 16 19 C 0.03 0.46 11.17 85.13 0.95 1.42 16 20 C -0.06 -1.00 10.04 22.17 0.22 -0.78 16 21 C -0.25 -6.08 10.09 22.54 0.23 -5.86 16 22 C 0.35 10.35 6.73 23.79 0.16 10.51 16 23 O -0.58 -21.12 15.88 14.58 0.23 -20.89 16 24 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 25 H 0.39 13.02 5.76 -92.71 -0.53 12.48 16 26 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.08 2.01 8.10 -2.38 -0.02 1.99 16 29 H 0.10 1.93 8.10 -2.39 -0.02 1.91 16 30 H 0.44 5.38 7.69 -92.71 -0.71 4.67 16 31 H 0.45 5.64 9.15 -74.05 -0.68 4.97 16 32 H 0.19 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -84.80 306.03 0.24 -84.56 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.80 Total: 28.96 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 5.09 Total: 12.75 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -5.56 Total: -101.97 kcal Atomic # 8 Polarization: -61.57 SS G_CDS: -0.39 Total: -61.96 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 1.90 Total: 37.67 kcal Total: -84.80 0.24 -84.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611114062.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.252 kcal (2) G-P(sol) polarization free energy of solvation -84.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds