Wall clock time and date at job start Tue Mar 31 2020 01:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48501 * 109.46923 * 239.99657 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99404 * 3 2 1 7 7 C 1.38954 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21553 * 120.00289 * 359.72074 * 14 13 12 16 16 C 1.47846 * 119.99557 * 179.72375 * 14 13 12 17 17 C 1.40026 * 120.55315 * 179.97438 * 16 14 13 18 18 C 1.38359 * 118.28180 * 179.97438 * 17 16 14 19 19 C 1.38348 * 119.30816 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.46273 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.46911 * 0.02562 * 20 19 18 22 22 N 1.31934 * 121.07800 * 359.97438 * 19 18 17 23 23 C 1.31692 * 121.87762 * 359.77075 * 22 19 18 24 24 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 26 26 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 27 27 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 28 28 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 29 29 H 1.07991 * 120.85932 * 359.97438 * 17 16 14 30 30 H 1.07996 * 120.34498 * 179.97438 * 18 17 16 31 31 H 1.09004 * 109.46807 * 120.00428 * 20 19 18 32 32 H 1.09001 * 109.47095 * 239.99615 * 20 19 18 33 33 H 0.96704 * 113.99527 * 179.97438 * 21 20 19 34 34 H 1.08002 * 119.71777 * 180.24066 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1960 -5.9765 0.0016 14 6 1.7467 -7.2471 -0.0035 15 8 0.5516 -7.4693 -0.0035 16 6 2.7075 -8.3708 -0.0092 17 6 2.2536 -9.6955 -0.0140 18 6 3.1937 -10.7106 -0.0198 19 6 4.5390 -10.3877 -0.0200 20 6 5.5659 -11.4906 -0.0257 21 8 4.9045 -12.7572 -0.0307 22 7 4.9375 -9.1300 -0.0154 23 6 4.0816 -8.1292 -0.0148 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3907 -0.0002 26 1 0.6169 -4.9209 -0.8887 27 1 0.6175 -4.9205 0.8913 28 1 3.1496 -5.7992 0.0012 29 1 1.1971 -9.9190 -0.0133 30 1 2.8806 -11.7441 -0.0232 31 1 6.1886 -11.4026 -0.9161 32 1 6.1907 -11.4099 0.8639 33 1 5.5056 -13.5148 -0.0349 34 1 4.4464 -7.1127 -0.0149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627010311.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:06 Heat of formation + Delta-G solvation = -86.215075 kcal Electronic energy + Delta-G solvation = -20196.647982 eV Core-core repulsion = 16708.606158 eV Total energy + Delta-G solvation = -3488.041824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79484 -39.27894 -38.11004 -37.13588 -34.59145 -33.80456 -32.84804 -31.99753 -31.39475 -28.41386 -26.75164 -24.56395 -23.90944 -22.69679 -20.49874 -19.69771 -18.39988 -18.07471 -17.70396 -16.73795 -16.14641 -15.69639 -15.60576 -15.32130 -15.11709 -14.92173 -14.48246 -14.09201 -14.06996 -13.59001 -13.37051 -13.21325 -12.75060 -12.25564 -12.02072 -12.00847 -11.65400 -11.12286 -10.79339 -10.52391 -10.35096 -10.22379 -10.07208 -9.65372 -9.59317 -9.23765 -8.87820 -8.67948 -8.13227 -6.53895 -3.96116 0.44361 1.03586 2.81200 3.12304 3.16200 3.20783 3.26574 3.33381 3.65822 3.72045 4.08918 4.35787 4.47048 4.66910 4.71814 4.82674 4.85184 4.99466 5.01654 5.14435 5.28701 5.50906 5.76978 5.84356 5.89992 5.96020 6.01935 6.33289 6.53955 7.10981 7.43641 7.59354 7.66370 7.88548 8.26809 8.41971 9.01677 9.35777 9.83350 10.62802 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.044244 B = 0.002824 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.697850 B = 9911.441810 C =10523.675681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.547 5.547 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.700 5.700 14 C 0.560 3.440 15 O -0.542 6.542 16 C -0.182 4.182 17 C -0.019 4.019 18 C -0.157 4.157 19 C 0.136 3.864 20 C 0.128 3.872 21 O -0.570 6.570 22 N -0.484 5.484 23 C 0.142 3.858 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.410 0.590 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.389 0.611 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -20.546 -0.058 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.353 5.353 14 C 0.346 3.654 15 O -0.421 6.421 16 C -0.187 4.187 17 C -0.045 4.045 18 C -0.177 4.177 19 C -0.001 4.001 20 C 0.049 3.951 21 O -0.376 6.376 22 N -0.194 5.194 23 C -0.017 4.017 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.250 0.750 29 H 0.167 0.833 30 H 0.168 0.832 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.237 0.763 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.866 -19.925 -0.049 21.074 hybrid contribution -0.204 0.555 -0.004 0.592 sum 6.662 -19.369 -0.054 20.483 Atomic orbital electron populations 1.69604 1.06026 1.28701 1.49075 1.25337 0.95674 0.99976 0.96689 0.85863 0.78780 0.80081 0.79191 1.19743 1.20841 1.19738 1.19690 0.93464 0.81964 1.48442 0.87664 1.41784 1.09507 1.04457 1.62412 1.19697 0.88291 0.84949 0.85850 1.90497 1.13661 1.86781 1.57503 1.21010 0.91764 0.85564 1.03559 1.45620 1.11790 1.04491 1.73442 1.17957 0.87881 0.82501 0.77057 1.90767 1.15930 1.84815 1.50588 1.21039 0.95142 0.95013 1.07485 1.21786 1.01347 0.90648 0.90734 1.21896 0.93016 1.01200 1.01556 1.21088 0.93176 0.91707 0.94145 1.20600 0.91432 0.81144 1.01881 1.86380 1.38109 1.15290 1.97861 1.67259 1.39412 0.99146 1.13572 1.23031 0.88273 0.98502 0.91908 0.91487 0.76992 0.89513 0.89507 0.75027 0.83295 0.83191 0.90853 0.90851 0.76272 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.69 13.05 55.50 0.72 -22.97 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.40 29.55 -169.99 -5.02 15.37 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.31 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.55 -13.40 5.29 -10.96 -0.06 -13.45 16 10 C 0.43 9.62 7.85 -10.98 -0.09 9.53 16 11 O -0.60 -15.00 15.24 5.55 0.08 -14.92 16 12 C 0.11 1.96 6.15 -5.19 -0.03 1.93 16 13 N -0.70 -11.57 5.48 -62.43 -0.34 -11.91 16 14 C 0.56 9.02 7.78 -12.33 -0.10 8.93 16 15 O -0.54 -10.10 16.42 5.32 0.09 -10.01 16 16 C -0.18 -2.47 5.89 -104.82 -0.62 -3.09 16 17 C -0.02 -0.23 9.72 -38.87 -0.38 -0.60 16 18 C -0.16 -1.69 9.40 -39.50 -0.37 -2.06 16 19 C 0.14 1.49 6.78 -82.51 -0.56 0.93 16 20 C 0.13 0.94 7.58 36.00 0.27 1.21 16 21 O -0.57 -3.65 12.09 -35.23 -0.43 -4.08 16 22 N -0.48 -6.05 10.25 -9.14 -0.09 -6.14 16 23 C 0.14 1.81 10.71 -17.13 -0.18 1.62 16 24 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16 26 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.41 6.56 5.50 -40.82 -0.22 6.34 16 29 H 0.15 1.67 7.74 -52.49 -0.41 1.27 16 30 H 0.15 1.39 6.98 -52.49 -0.37 1.02 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.39 0.55 9.12 45.56 0.42 0.97 16 34 H 0.17 1.93 6.42 -52.49 -0.34 1.59 16 LS Contribution 307.45 15.07 4.63 4.63 Total: -1.00 -32.83 307.45 -5.15 -37.98 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -2.44 Total: 14.88 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -2.29 Total: 10.61 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.23 Total: -54.47 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.25 Total: -29.00 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.83 -5.15 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627010311.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.233 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds