Wall clock time and date at job start Tue Mar 31 2020 00:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35943 * 116.99808 * 2 1 4 4 C 1.38196 * 120.01166 * 359.72139 * 3 2 1 5 5 C 1.39745 * 119.85836 * 179.74757 * 4 3 2 6 6 C 1.47376 * 120.06947 * 180.27940 * 5 4 3 7 7 N 1.29791 * 120.00430 * 180.22918 * 6 5 4 8 8 N 1.40103 * 120.00313 * 179.97438 * 7 6 5 9 9 C 1.34775 * 120.00414 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99632 * 359.97438 * 9 8 7 11 11 O 1.21592 * 120.00231 * 180.02562 * 9 8 7 12 12 C 1.39816 * 119.86832 * 0.50995 * 5 4 3 13 13 C 1.37777 * 120.01826 * 359.76763 * 12 5 4 14 14 C 1.38958 * 120.13859 * 359.97438 * 13 12 5 15 15 O 1.35705 * 119.92812 * 179.97438 * 14 13 12 16 16 C 1.34786 * 117.00508 * 354.38437 * 15 14 13 17 17 H 1.08004 * 119.99974 * 5.05882 * 16 15 14 18 18 C 1.38616 * 120.00270 * 185.06473 * 16 15 14 19 19 N 1.31582 * 119.99857 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00267 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47165 * 59.99886 * 20 18 16 22 22 H 1.48501 * 109.47301 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47020 * 300.00247 * 20 18 16 24 24 H 1.09002 * 109.47452 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47514 * 60.00448 * 1 2 3 26 26 H 1.08998 * 109.47061 * 300.00034 * 1 2 3 27 27 H 1.07997 * 120.06980 * 359.97438 * 4 3 2 28 28 H 1.08006 * 119.99690 * 0.22959 * 6 5 4 29 29 H 0.96998 * 119.99727 * 0.02562 * 8 7 6 30 30 H 0.96995 * 120.00327 * 0.02562 * 10 9 8 31 31 H 0.97005 * 119.99797 * 180.02562 * 10 9 8 32 32 H 1.08000 * 119.99506 * 179.74700 * 12 5 4 33 33 H 1.07996 * 119.92905 * 179.97438 * 13 12 5 34 34 H 0.97001 * 119.99675 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2937 2.3704 -0.0058 5 6 1.9313 3.6139 -0.0005 6 6 1.1334 4.8529 -0.0004 7 7 1.7270 6.0072 0.0001 8 7 0.9684 7.1851 -0.0004 9 6 1.5848 8.3836 -0.0004 10 7 2.9310 8.4490 0.0005 11 8 0.9264 9.4059 -0.0004 12 6 3.3279 3.6802 0.0000 13 6 4.0730 2.5212 0.0000 14 6 3.4395 1.2845 0.0001 15 8 4.1775 0.1457 -0.0005 16 6 5.5132 0.2821 -0.1186 17 1 5.9570 1.2667 -0.1250 18 6 6.3174 -0.8412 -0.2319 19 7 5.7768 -2.0408 -0.2237 20 14 8.1685 -0.6522 -0.3964 21 1 8.7021 0.0521 0.7972 22 1 8.7958 -1.9940 -0.5016 23 1 8.4791 0.1360 -1.6161 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2151 2.3154 -0.0108 28 1 0.0546 4.8005 -0.0008 29 1 -0.0004 7.1380 -0.0007 30 1 3.4562 7.6336 0.0009 31 1 3.3746 9.3117 0.0009 32 1 3.8229 4.6401 0.0000 33 1 5.1517 2.5741 -0.0001 34 1 6.3395 -2.8269 -0.3026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003572480.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:40 Heat of formation + Delta-G solvation = -26.141456 kcal Electronic energy + Delta-G solvation = -20524.158818 eV Core-core repulsion = 17038.721981 eV Total energy + Delta-G solvation = -3485.436837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.84546 -39.67422 -37.70137 -37.15614 -35.70891 -33.51688 -32.57632 -31.65402 -29.74301 -28.81079 -26.67545 -25.58330 -23.31236 -21.86455 -21.36162 -20.44013 -18.40000 -18.28051 -17.70891 -17.41276 -16.19224 -15.61345 -15.34682 -15.33204 -15.24790 -14.72137 -14.58005 -14.02589 -13.96234 -13.62763 -13.48484 -12.76650 -12.46657 -11.83786 -11.65507 -11.55987 -11.24223 -11.04587 -10.89594 -10.61362 -10.61003 -10.56234 -10.24427 -9.75260 -9.60263 -9.18628 -8.77319 -8.02888 -6.99519 -6.62627 -4.15310 1.21303 2.08120 2.56659 2.66135 3.04893 3.06761 3.09235 3.27850 3.82238 3.85157 3.92664 4.41378 4.79440 4.89788 4.99741 5.23292 5.42265 5.47971 5.56747 5.67694 5.78011 5.85502 6.09065 6.19446 6.41248 6.63832 6.74835 6.79305 6.89170 7.06398 7.13392 7.31851 7.43385 7.77423 8.02404 8.11494 8.59576 8.80552 9.48020 10.53063 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017994 B = 0.003971 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.723649 B = 7049.215982 C = 8586.070777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.053 3.947 4 C -0.134 4.134 5 C -0.146 4.146 6 C 0.163 3.837 7 N -0.292 5.292 8 N -0.592 5.592 9 C 0.736 3.264 10 N -0.851 5.851 11 O -0.602 6.602 12 C -0.041 4.041 13 C -0.227 4.227 14 C 0.150 3.850 15 O -0.148 6.148 16 C -0.391 4.391 17 H 0.098 0.902 18 C 0.042 3.958 19 N -0.846 5.846 20 Si 0.945 3.055 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.267 1.267 24 H 0.092 0.908 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.395 0.605 30 H 0.410 0.590 31 H 0.411 0.589 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 8.673 0.194 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.008 3.992 4 C -0.155 4.155 5 C -0.150 4.150 6 C -0.044 4.044 7 N -0.102 5.102 8 N -0.339 5.339 9 C 0.434 3.566 10 N -0.419 5.419 11 O -0.479 6.479 12 C -0.062 4.062 13 C -0.247 4.247 14 C 0.093 3.907 15 O -0.048 6.048 16 C -0.466 4.466 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.478 5.478 20 Si 0.768 3.232 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.192 1.192 24 H 0.110 0.890 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.141 0.859 28 H 0.127 0.873 29 H 0.235 0.765 30 H 0.241 0.759 31 H 0.242 0.758 32 H 0.139 0.861 33 H 0.155 0.845 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.584 9.212 0.197 10.774 hybrid contribution -0.246 -0.130 -0.077 0.288 sum -5.830 9.083 0.120 10.793 Atomic orbital electron populations 1.22914 0.80219 1.03110 1.00327 1.86250 1.19530 1.26151 1.89713 1.17966 0.89344 0.84486 1.07414 1.20667 0.98486 0.90623 1.05736 1.17447 0.92465 0.88918 1.16213 1.24236 0.97202 0.90326 0.92677 1.74464 1.23675 0.92893 1.19180 1.46242 1.07931 1.02431 1.77287 1.15426 0.82849 0.81656 0.76650 1.42894 1.05332 1.13015 1.80613 1.91010 1.65205 1.32003 1.59678 1.20858 0.92235 0.97589 0.95505 1.20865 1.00814 0.90683 1.12315 1.18874 0.88292 0.87718 0.95835 1.84017 1.19720 1.25820 1.75280 1.21457 0.78378 0.95090 1.51710 0.88512 1.25396 1.00883 0.94159 0.96068 1.70064 1.36743 0.97818 1.43191 0.85721 0.79789 0.78206 0.79446 1.19220 1.20118 1.19220 0.89004 0.93451 0.93471 0.85880 0.87345 0.76498 0.75937 0.75781 0.86148 0.84466 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.30 -6.03 10.28 -34.18 -0.35 -6.38 16 3 C 0.05 1.06 6.70 -39.12 -0.26 0.79 16 4 C -0.13 -2.11 8.77 -39.03 -0.34 -2.45 16 5 C -0.15 -2.23 5.87 -105.03 -0.62 -2.85 16 6 C 0.16 2.04 10.74 -14.70 -0.16 1.88 16 7 N -0.29 -3.75 9.46 32.14 0.30 -3.45 16 8 N -0.59 -7.37 6.27 27.64 0.17 -7.19 16 9 C 0.74 10.15 8.95 -86.92 -0.78 9.38 16 10 N -0.85 -9.01 8.84 27.64 0.24 -8.77 16 11 O -0.60 -10.26 18.02 5.28 0.10 -10.16 16 12 C -0.04 -0.68 9.57 -39.16 -0.37 -1.06 16 13 C -0.23 -4.45 9.14 -39.48 -0.36 -4.81 16 14 C 0.15 3.40 6.67 -38.84 -0.26 3.14 16 15 O -0.15 -4.02 9.53 -14.31 -0.14 -4.16 16 16 C -0.39 -10.21 9.48 30.87 0.29 -9.91 16 17 H 0.10 2.27 5.19 -52.48 -0.27 2.00 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.85 -23.61 13.67 55.48 0.76 -22.85 16 20 Si 0.94 19.16 29.55 -169.99 -5.02 14.13 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 26 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 27 H 0.12 1.52 6.28 -52.49 -0.33 1.19 16 28 H 0.11 1.04 8.02 -52.48 -0.42 0.62 16 29 H 0.39 4.23 8.75 -182.60 -1.60 2.64 16 30 H 0.41 4.06 7.87 -40.82 -0.32 3.74 16 31 H 0.41 3.49 8.93 -40.82 -0.36 3.12 16 32 H 0.12 1.74 7.54 -52.49 -0.40 1.34 16 33 H 0.14 2.64 5.62 -52.49 -0.29 2.34 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -32.31 308.09 -5.61 -37.92 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.35 Total: 9.78 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.96 Total: -3.51 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 1.48 Total: -42.26 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.39 Total: -20.70 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.31 -5.61 -37.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003572480.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.778 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds