Wall clock time and date at job start Tue Mar 31 2020 00:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 119.99927 * 2 1 4 4 C 1.50703 * 109.47289 * 90.00033 * 3 2 1 5 5 H 1.07996 * 119.99947 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00155 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00072 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00095 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46841 * 60.00063 * 8 6 4 10 10 H 1.48499 * 109.47383 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46951 * 300.00592 * 8 6 4 12 12 C 1.34769 * 119.99947 * 180.02562 * 2 1 3 13 13 O 1.21599 * 120.00228 * 184.77651 * 12 2 1 14 14 C 1.47525 * 119.99883 * 4.77156 * 12 2 1 15 15 C 1.39810 * 120.07240 * 22.12129 * 14 12 2 16 16 C 1.37587 * 119.93460 * 180.02562 * 15 14 12 17 17 C 1.39239 * 120.06713 * 359.97438 * 16 15 14 18 18 N 1.39050 * 119.92970 * 180.02562 * 17 16 15 19 19 C 1.39193 * 120.13923 * 359.97438 * 17 16 15 20 20 N 1.48019 * 119.96721 * 180.02562 * 19 17 16 21 21 O 1.21802 * 120.00182 * 185.99974 * 20 19 17 22 22 O 1.21798 * 120.00157 * 5.99455 * 20 19 17 23 23 C 1.37632 * 120.06881 * 359.76736 * 19 17 16 24 24 H 1.09003 * 109.47292 * 84.20509 * 1 2 3 25 25 H 1.09000 * 109.46903 * 204.20852 * 1 2 3 26 26 H 1.09000 * 109.46991 * 324.20516 * 1 2 3 27 27 H 1.09004 * 109.47330 * 330.00190 * 3 2 1 28 28 H 1.09002 * 109.47489 * 210.00014 * 3 2 1 29 29 H 0.96993 * 119.99866 * 179.97438 * 7 6 4 30 30 H 1.08008 * 120.03024 * 0.02562 * 15 14 12 31 31 H 1.07998 * 119.96181 * 180.02562 * 16 15 14 32 32 H 0.96999 * 119.99636 * 25.01337 * 18 17 16 33 33 H 0.97001 * 119.99592 * 205.01139 * 18 17 16 34 34 H 1.08003 * 120.03563 * 180.27828 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0975 1.0962 2.2417 6 6 3.1269 2.8775 1.6728 7 7 3.5542 3.6176 0.6732 8 14 3.4389 3.4164 3.4339 9 1 4.2413 2.3810 4.1335 10 1 4.1813 4.7025 3.4339 11 1 2.1415 3.5941 4.1343 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1691 0.0872 14 6 1.4051 -2.4425 -0.1074 15 6 0.1204 -2.4675 -0.6585 16 6 -0.5616 -3.6584 -0.7563 17 6 0.0265 -4.8380 -0.3075 18 7 -0.6652 -6.0401 -0.4082 19 6 1.3057 -4.8166 0.2407 20 7 1.9275 -6.0730 0.7160 21 8 2.9990 -6.0414 1.2944 22 8 1.3677 -7.1384 0.5289 23 6 1.9952 -3.6293 0.3364 24 1 -0.3634 0.1038 -1.0224 25 1 -0.3633 -0.9373 0.4214 26 1 -0.3633 0.8336 0.6011 27 1 1.6084 2.0284 -0.5138 28 1 3.1500 1.1384 -0.5138 29 1 4.0310 4.4434 0.8504 30 1 -0.3361 -1.5528 -1.0071 31 1 -1.5538 -3.6783 -1.1823 32 1 -1.3561 -6.1472 -1.0806 33 1 -0.4567 -6.7715 0.1939 34 1 2.9896 -3.6141 0.7577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048463121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:03 Heat of formation + Delta-G solvation = 18.650003 kcal Electronic energy + Delta-G solvation = -21305.806018 eV Core-core repulsion = 17822.311485 eV Total energy + Delta-G solvation = -3483.494533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.27638 -40.28943 -38.48105 -36.72724 -35.24817 -34.81803 -32.80530 -31.96592 -29.81479 -28.09189 -26.32964 -26.12778 -23.85750 -22.80509 -22.27005 -20.01764 -18.73434 -18.36516 -17.80260 -17.59612 -17.20305 -16.61236 -15.99505 -15.61403 -14.79121 -14.52893 -14.48731 -14.36195 -13.71161 -13.45381 -13.00246 -12.54147 -12.25121 -12.08591 -11.58814 -11.48767 -11.28550 -11.22550 -11.18340 -10.98665 -10.69102 -10.56437 -10.21585 -9.77060 -9.67625 -9.20467 -8.47823 -8.29882 -7.80211 -6.09288 -4.14320 -0.11958 0.72738 1.27032 1.38546 2.86151 3.23471 3.30037 3.34921 3.37942 3.61493 3.84980 4.14161 4.40672 4.50240 4.72458 4.77838 4.85870 5.25229 5.28710 5.40444 5.49848 5.61285 5.65837 5.91978 6.01329 6.07864 6.39317 6.75468 6.92661 7.20688 7.31958 7.39231 7.64583 7.86098 8.15259 8.21365 8.78185 8.93376 9.50963 10.98905 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026693 B = 0.004187 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.697497 B = 6685.376969 C = 7271.150396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.593 5.593 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.549 3.451 13 O -0.529 6.529 14 C -0.169 4.169 15 C -0.017 4.017 16 C -0.206 4.206 17 C 0.293 3.707 18 N -0.852 5.852 19 C -0.128 4.128 20 N 0.051 4.949 21 O -0.159 6.159 22 O -0.198 6.198 23 C 0.038 3.962 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.265 0.735 30 H 0.170 0.830 31 H 0.148 0.852 32 H 0.406 0.594 33 H 0.415 0.585 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 -14.900 -4.552 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.324 5.324 3 C 0.128 3.872 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.203 1.203 12 C 0.336 3.664 13 O -0.406 6.406 14 C -0.176 4.176 15 C -0.036 4.036 16 C -0.228 4.228 17 C 0.180 3.820 18 N -0.398 5.398 19 C -0.218 4.218 20 N 0.562 4.438 21 O -0.376 6.376 22 O -0.400 6.400 23 C 0.018 3.982 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.187 0.813 31 H 0.166 0.834 32 H 0.236 0.764 33 H 0.253 0.747 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.003 -14.190 -4.752 19.825 hybrid contribution 0.057 -0.260 1.078 1.110 sum -12.946 -14.450 -3.675 19.746 Atomic orbital electron populations 1.22314 0.81982 1.03047 1.00507 1.48042 1.06004 1.07636 1.70731 1.19362 0.92525 0.77532 0.97816 1.21365 1.36900 1.06383 0.92145 0.92412 1.24923 0.95205 0.96320 0.97523 1.69911 1.38191 1.14381 1.30857 0.86545 0.78399 0.77876 0.84542 1.20072 1.21127 1.20257 1.17784 0.87200 0.82897 0.78557 1.90806 1.13363 1.86706 1.49763 1.20004 0.96145 0.94380 1.07031 1.22567 0.92041 0.99248 0.89708 1.20794 1.02138 0.89694 1.10219 1.17592 0.86870 0.88373 0.89154 1.43103 1.42201 1.13842 1.40690 1.20557 0.95426 0.85327 1.20518 1.43381 1.00341 1.02108 0.97987 1.94581 1.08744 1.93774 1.40500 1.94265 1.64569 1.18675 1.62503 1.20920 0.99737 0.88078 0.89461 0.92777 0.91026 0.90443 0.94617 0.93621 0.92570 0.81330 0.83393 0.76434 0.74658 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 8.68 59.85 0.52 1.41 16 2 N -0.59 -11.79 2.86 -184.19 -0.53 -12.32 16 3 C 0.25 6.17 5.15 -5.20 -0.03 6.15 16 4 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.55 11.09 7.51 -12.48 -0.09 11.00 16 13 O -0.53 -13.14 16.17 5.28 0.09 -13.06 16 14 C -0.17 -2.55 5.57 -104.95 -0.58 -3.14 16 15 C -0.02 -0.18 7.53 -39.23 -0.30 -0.47 16 16 C -0.21 -1.74 9.91 -39.45 -0.39 -2.14 16 17 C 0.29 3.00 6.74 -83.86 -0.56 2.43 16 18 N -0.85 -6.39 8.45 32.41 0.27 -6.11 16 19 C -0.13 -1.72 6.85 -79.81 -0.55 -2.27 16 20 N 0.05 0.75 4.45 34.03 0.15 0.90 16 21 O -0.16 -2.61 18.45 -29.46 -0.54 -3.15 16 22 O -0.20 -2.70 15.86 -29.46 -0.47 -3.17 16 23 C 0.04 0.58 9.08 -39.23 -0.36 0.22 16 24 H 0.05 0.57 7.20 -51.93 -0.37 0.20 16 25 H 0.07 0.80 4.93 -51.93 -0.26 0.54 16 26 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 27 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 28 H 0.05 1.29 7.49 -51.93 -0.39 0.91 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.17 1.47 4.16 -52.48 -0.22 1.25 16 31 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.41 1.74 8.90 -40.82 -0.36 1.38 16 33 H 0.42 3.41 6.07 -40.82 -0.25 3.16 16 34 H 0.16 2.65 7.35 -52.48 -0.39 2.26 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -34.02 298.73 -6.61 -40.63 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.04 Total: 0.65 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.76 Total: -0.12 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 0.64 Total: -42.86 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.93 Total: -19.38 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.02 -6.61 -40.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048463121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.281 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds