Wall clock time and date at job start Tue Mar 31 2020 00:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 119.99927 * 2 1 4 4 C 1.50703 * 109.47289 * 90.00033 * 3 2 1 5 5 H 1.07996 * 119.99947 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00155 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00072 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00095 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46841 * 60.00063 * 8 6 4 10 10 H 1.48499 * 109.47383 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46951 * 300.00592 * 8 6 4 12 12 C 1.34769 * 119.99947 * 180.02562 * 2 1 3 13 13 O 1.21599 * 120.00228 * 184.77651 * 12 2 1 14 14 C 1.47525 * 119.99883 * 4.77156 * 12 2 1 15 15 C 1.39810 * 120.07240 * 22.12129 * 14 12 2 16 16 C 1.37587 * 119.93460 * 180.02562 * 15 14 12 17 17 C 1.39239 * 120.06713 * 359.97438 * 16 15 14 18 18 N 1.39050 * 119.92970 * 180.02562 * 17 16 15 19 19 C 1.39193 * 120.13923 * 359.97438 * 17 16 15 20 20 N 1.48019 * 119.96721 * 180.02562 * 19 17 16 21 21 O 1.21802 * 120.00182 * 185.99974 * 20 19 17 22 22 O 1.21798 * 120.00157 * 5.99455 * 20 19 17 23 23 C 1.37632 * 120.06881 * 359.76736 * 19 17 16 24 24 H 1.09003 * 109.47292 * 84.20509 * 1 2 3 25 25 H 1.09000 * 109.46903 * 204.20852 * 1 2 3 26 26 H 1.09000 * 109.46991 * 324.20516 * 1 2 3 27 27 H 1.09004 * 109.47330 * 330.00190 * 3 2 1 28 28 H 1.09002 * 109.47489 * 210.00014 * 3 2 1 29 29 H 0.96993 * 119.99866 * 179.97438 * 7 6 4 30 30 H 1.08008 * 120.03024 * 0.02562 * 15 14 12 31 31 H 1.07998 * 119.96181 * 180.02562 * 16 15 14 32 32 H 0.96999 * 119.99636 * 25.01337 * 18 17 16 33 33 H 0.97001 * 119.99592 * 205.01139 * 18 17 16 34 34 H 1.08003 * 120.03563 * 180.27828 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0975 1.0962 2.2417 6 6 3.1269 2.8775 1.6728 7 7 3.5542 3.6176 0.6732 8 14 3.4389 3.4164 3.4339 9 1 4.2413 2.3810 4.1335 10 1 4.1813 4.7025 3.4339 11 1 2.1415 3.5941 4.1343 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1691 0.0872 14 6 1.4051 -2.4425 -0.1074 15 6 0.1204 -2.4675 -0.6585 16 6 -0.5616 -3.6584 -0.7563 17 6 0.0265 -4.8380 -0.3075 18 7 -0.6652 -6.0401 -0.4082 19 6 1.3057 -4.8166 0.2407 20 7 1.9275 -6.0730 0.7160 21 8 2.9990 -6.0414 1.2944 22 8 1.3677 -7.1384 0.5289 23 6 1.9952 -3.6293 0.3364 24 1 -0.3634 0.1038 -1.0224 25 1 -0.3633 -0.9373 0.4214 26 1 -0.3633 0.8336 0.6011 27 1 1.6084 2.0284 -0.5138 28 1 3.1500 1.1384 -0.5138 29 1 4.0310 4.4434 0.8504 30 1 -0.3361 -1.5528 -1.0071 31 1 -1.5538 -3.6783 -1.1823 32 1 -1.3561 -6.1472 -1.0806 33 1 -0.4567 -6.7715 0.1939 34 1 2.9896 -3.6141 0.7577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048463121.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:03 Heat of formation + Delta-G solvation = -6.052444 kcal Electronic energy + Delta-G solvation = -21306.877197 eV Core-core repulsion = 17822.311485 eV Total energy + Delta-G solvation = -3484.565712 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.37788 -41.50481 -39.75666 -37.85029 -36.84984 -35.85954 -34.73133 -33.07544 -30.94591 -29.69134 -27.77125 -27.29657 -25.44484 -23.83748 -23.62894 -21.32096 -19.84864 -19.68049 -18.84425 -18.71436 -18.47766 -18.12972 -17.33116 -17.12057 -16.39742 -16.12850 -15.58044 -15.27105 -14.96291 -14.65322 -14.33751 -14.12989 -13.75526 -13.40435 -13.21618 -12.90316 -12.72076 -12.62695 -12.43307 -12.39049 -12.30095 -12.18244 -11.74724 -11.63314 -10.86916 -10.64818 -10.59165 -9.54601 -9.10218 -8.23296 -6.37411 -1.16352 -0.30868 0.26485 0.34546 1.36204 1.40707 1.47560 1.70575 2.17093 2.40180 2.46837 2.53612 3.06848 3.23647 3.43883 3.75881 3.80879 3.88845 4.29804 4.41725 4.57415 4.62079 4.72148 4.93742 4.99018 5.02956 5.13125 5.22521 5.37714 5.53093 5.79603 6.02510 6.04549 6.49240 6.63615 6.65945 6.71808 7.23456 7.38202 8.83474 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026693 B = 0.004187 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.697497 B = 6685.376969 C = 7271.150396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.598 5.598 3 C 0.259 3.741 4 C -0.545 4.545 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.963 3.037 9 H -0.282 1.282 10 H -0.277 1.277 11 H -0.259 1.259 12 C 0.540 3.460 13 O -0.597 6.597 14 C -0.185 4.185 15 C -0.004 4.004 16 C -0.173 4.173 17 C 0.308 3.692 18 N -0.828 5.828 19 C -0.143 4.143 20 N 0.053 4.947 21 O -0.240 6.240 22 O -0.155 6.155 23 C 0.023 3.977 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.037 0.963 28 H -0.002 1.002 29 H 0.268 0.732 30 H 0.197 0.803 31 H 0.206 0.794 32 H 0.428 0.572 33 H 0.416 0.584 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.091 -16.123 -5.241 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.328 5.328 3 C 0.138 3.862 4 C -0.584 4.584 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.566 5.566 8 Si 0.788 3.212 9 H -0.208 1.208 10 H -0.202 1.202 11 H -0.183 1.183 12 C 0.330 3.670 13 O -0.480 6.480 14 C -0.192 4.192 15 C -0.023 4.023 16 C -0.195 4.195 17 C 0.192 3.808 18 N -0.374 5.374 19 C -0.235 4.235 20 N 0.558 4.442 21 O -0.436 6.436 22 O -0.371 6.371 23 C 0.002 3.998 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.017 0.983 29 H 0.077 0.923 30 H 0.214 0.786 31 H 0.223 0.777 32 H 0.262 0.738 33 H 0.253 0.747 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.587 -15.391 -5.390 23.984 hybrid contribution 1.257 -0.055 1.160 1.712 sum -16.330 -15.446 -4.230 22.872 Atomic orbital electron populations 1.22769 0.77784 1.04632 1.03447 1.47996 1.08610 1.05815 1.70357 1.18833 0.91295 0.79997 0.96050 1.21664 1.37087 1.06485 0.93147 0.93125 1.25788 0.94857 0.96445 1.01735 1.70019 1.38803 1.14815 1.32925 0.85536 0.78897 0.77306 0.79487 1.20835 1.20197 1.18293 1.18599 0.86793 0.84590 0.77022 1.90755 1.16544 1.87864 1.52805 1.19501 0.98103 0.91199 1.10348 1.22770 0.89696 1.01531 0.88306 1.21324 1.03458 0.87331 1.07371 1.17821 0.85413 0.90150 0.87430 1.43158 1.41409 1.12605 1.40187 1.20595 0.96726 0.83920 1.22210 1.43591 1.00174 1.02653 0.97766 1.94613 1.10572 1.94175 1.44212 1.94201 1.63644 1.19131 1.60109 1.20629 0.98951 0.89423 0.90814 0.88479 0.87737 0.91138 0.94516 0.98337 0.92332 0.78629 0.77694 0.73801 0.74695 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.34 8.68 127.77 1.11 2.45 16 2 N -0.60 -24.13 2.86 -854.92 -2.44 -26.58 16 3 C 0.26 13.60 5.15 85.64 0.44 14.04 16 4 C -0.55 -31.23 9.39 25.60 0.24 -30.99 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.64 5.46 84.66 0.46 1.10 16 7 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 8 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 9 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 12 C 0.54 22.85 7.51 86.69 0.65 23.50 16 13 O -0.60 -32.43 16.17 -4.03 -0.07 -32.49 16 14 C -0.19 -5.52 5.57 -20.08 -0.11 -5.63 16 15 C 0.00 -0.07 7.53 22.50 0.17 0.10 16 16 C -0.17 -1.80 9.91 22.36 0.22 -1.57 16 17 C 0.31 4.87 6.74 38.47 0.26 5.13 16 18 N -0.83 -7.70 8.45 -51.38 -0.43 -8.13 16 19 C -0.14 -3.70 6.85 36.46 0.25 -3.45 16 20 N 0.05 1.55 4.45 -46.25 -0.21 1.35 16 21 O -0.24 -8.54 18.45 18.88 0.35 -8.19 16 22 O -0.15 -3.93 15.86 18.89 0.30 -3.63 16 23 C 0.02 0.71 9.08 22.50 0.20 0.92 16 24 H 0.10 1.60 7.20 -2.39 -0.02 1.58 16 25 H 0.10 1.89 4.93 -2.39 -0.01 1.88 16 26 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 27 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 28 H 0.00 -0.09 7.49 -2.39 -0.02 -0.11 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 30 H 0.20 2.24 4.16 -2.91 -0.01 2.23 16 31 H 0.21 0.00 8.06 -2.91 -0.02 -0.02 16 32 H 0.43 0.68 8.90 -92.71 -0.83 -0.15 16 33 H 0.42 4.76 6.07 -92.71 -0.56 4.20 16 34 H 0.13 4.81 7.35 -2.91 -0.02 4.79 16 Total: -1.00 -83.44 298.73 3.50 -79.93 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -0.20 Total: 0.30 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 3.90 Total: 5.59 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -2.80 Total: -88.51 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: 0.58 Total: -44.31 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -83.44 3.50 -79.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048463121.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.879 kcal (2) G-P(sol) polarization free energy of solvation -83.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds