Wall clock time and date at job start Tue Mar 31 2020 00:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46708 * 2 1 4 4 C 1.33305 * 120.00219 * 68.36995 * 3 2 1 5 5 H 1.07990 * 119.99878 * 234.51177 * 4 3 2 6 6 C 1.46788 * 119.99899 * 54.51163 * 4 3 2 7 7 N 1.29316 * 120.00046 * 35.69449 * 6 4 3 8 8 Si 1.86803 * 119.99991 * 215.69331 * 6 4 3 9 9 H 1.48496 * 109.47024 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47028 * 119.99661 * 8 6 4 11 11 H 1.48495 * 109.46961 * 239.99991 * 8 6 4 12 12 C 1.34773 * 120.00028 * 248.36259 * 3 2 1 13 13 O 1.21523 * 120.00307 * 184.99976 * 12 3 2 14 14 C 1.47337 * 119.99951 * 5.00648 * 12 3 2 15 15 C 1.39910 * 120.07920 * 36.96893 * 14 12 3 16 16 C 1.36540 * 120.04930 * 179.97438 * 15 14 12 17 17 C 1.39279 * 120.20866 * 359.97438 * 16 15 14 18 18 N 1.38962 * 119.92679 * 180.02562 * 17 16 15 19 19 C 1.39270 * 120.14356 * 359.97438 * 17 16 15 20 20 N 1.48016 * 120.02011 * 180.02562 * 19 17 16 21 21 O 1.31701 * 120.00346 * 185.54388 * 20 19 17 22 22 O 1.31703 * 120.00301 * 5.55158 * 20 19 17 23 23 C 1.37609 * 119.95617 * 359.78932 * 19 17 16 24 24 H 1.08994 * 109.47411 * 93.12112 * 1 2 3 25 25 H 1.09001 * 109.46910 * 213.12459 * 1 2 3 26 26 H 1.09000 * 109.47644 * 333.11989 * 1 2 3 27 27 H 1.09003 * 109.47391 * 119.99443 * 2 1 3 28 28 H 1.08996 * 109.47412 * 240.00270 * 2 1 3 29 29 H 0.96997 * 120.00100 * 180.02562 * 7 6 4 30 30 H 1.08003 * 119.97108 * 0.02562 * 15 14 12 31 31 H 1.07997 * 119.89834 * 179.97438 * 16 15 14 32 32 H 0.97002 * 119.99584 * 28.07477 * 18 17 16 33 33 H 0.96999 * 120.00098 * 208.06351 * 18 17 16 34 34 H 1.07996 * 120.10466 * 180.24748 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 1.8391 2.1515 1.0731 5 1 1.3502 3.1094 0.9747 6 6 2.3065 1.6977 2.3885 7 7 3.3991 1.0128 2.4856 8 14 1.3230 2.1096 3.9224 9 1 0.1217 2.8962 3.5437 10 1 0.9004 0.8531 4.5916 11 1 2.1645 2.9062 4.8509 12 6 2.6485 1.8732 -1.0849 13 8 3.1335 2.9870 -1.0530 14 6 2.7496 1.0606 -2.3098 15 6 1.6852 0.2386 -2.6958 16 6 1.7793 -0.5138 -3.8313 17 6 2.9333 -0.4663 -4.6098 18 7 3.0225 -1.2341 -5.7646 19 6 3.9974 0.3498 -4.2340 20 7 5.2222 0.3986 -5.0636 21 8 6.2691 1.0840 -4.6528 22 8 5.2652 -0.2433 -6.2128 23 6 3.9074 1.1144 -3.0934 24 1 -0.3634 -0.0559 -1.0261 25 1 -0.3633 -0.8607 0.5616 26 1 -0.3634 0.9166 0.4646 27 1 1.8933 -0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.7077 0.7126 3.3548 30 1 0.7882 0.1999 -2.0955 31 1 0.9564 -1.1477 -4.1267 32 1 2.2187 -1.4692 -6.2539 33 1 3.8886 -1.5347 -6.0814 34 1 4.7296 1.7511 -2.8019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:37 Heat of formation + Delta-G solvation = 45.270077 kcal Electronic energy + Delta-G solvation = -21718.195905 eV Core-core repulsion = 18235.855704 eV Total energy + Delta-G solvation = -3482.340200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -40.52642 -38.84796 -37.66140 -35.23038 -35.02116 -33.89933 -32.59567 -31.63889 -29.77022 -29.41906 -26.45692 -24.97018 -22.99848 -22.59251 -22.13414 -19.91298 -18.13888 -17.90019 -17.41153 -17.13385 -16.83923 -15.87051 -15.64984 -15.30885 -14.76843 -14.44938 -14.16943 -13.76432 -13.67431 -13.33315 -12.93229 -12.24509 -12.06192 -11.71720 -11.54421 -11.25651 -11.21444 -11.14372 -11.00818 -10.79528 -10.55826 -10.49432 -10.39359 -10.27160 -9.42967 -9.06983 -8.56847 -7.99601 -7.56739 -6.56541 -4.01949 -0.43192 1.03880 1.29830 1.33972 3.00071 3.15525 3.20401 3.22738 3.46024 3.96144 4.14598 4.33478 4.54801 4.63272 4.84716 5.03971 5.07288 5.27937 5.55486 5.58683 5.70647 5.87407 5.95375 6.01525 6.12635 6.28284 6.36837 6.50363 6.66417 6.88550 6.90197 7.05640 7.21380 7.42139 8.31691 8.36739 9.03146 9.23970 10.05328 10.34938 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.004903 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.833712 B = 5709.820630 C = 6318.350183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.084 3.916 3 N -0.404 5.404 4 C -0.381 4.381 5 H 0.087 0.913 6 C 0.073 3.927 7 N -0.795 5.795 8 Si 0.901 3.099 9 H -0.259 1.259 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.489 3.511 13 O -0.562 6.562 14 C -0.141 4.141 15 C -0.012 4.012 16 C -0.202 4.202 17 C 0.284 3.716 18 N -0.850 5.850 19 C -0.078 4.078 20 N 0.011 4.989 21 O -0.184 6.184 22 O -0.223 6.223 23 C 0.019 3.981 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.276 0.724 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.404 0.596 33 H 0.414 0.586 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 -8.650 -9.069 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.039 4.039 3 N -0.121 5.121 4 C -0.508 4.508 5 H 0.105 0.895 6 C -0.147 4.147 7 N -0.422 5.422 8 Si 0.726 3.274 9 H -0.182 1.182 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.278 3.722 13 O -0.445 6.445 14 C -0.148 4.148 15 C -0.032 4.032 16 C -0.224 4.224 17 C 0.171 3.829 18 N -0.399 5.399 19 C -0.172 4.172 20 N 0.477 4.523 21 O -0.374 6.374 22 O -0.400 6.400 23 C -0.002 4.002 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.176 0.824 31 H 0.164 0.836 32 H 0.234 0.766 33 H 0.253 0.747 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.763 -8.257 -8.633 13.728 hybrid contribution 0.124 -0.291 0.282 0.424 sum -6.639 -8.547 -8.351 13.670 Atomic orbital electron populations 1.22240 0.96876 1.03267 1.00093 1.21905 0.93551 0.86926 1.01540 1.42053 1.46923 1.10583 1.12573 1.19657 1.42518 1.05381 0.83287 0.89508 1.27219 0.92745 0.94396 1.00358 1.69224 1.16043 1.29990 1.26939 0.86338 0.81364 0.78849 0.80872 1.18211 1.20245 1.20484 1.18341 0.81301 0.88099 0.84417 1.90629 1.49208 1.20912 1.83738 1.20449 0.93858 1.01782 0.98699 1.21963 0.98736 0.89230 0.93228 1.20544 0.98428 1.06716 0.96756 1.17578 0.91716 0.86601 0.86981 1.43088 1.13998 1.56715 1.26067 1.19956 0.86842 1.10913 0.99477 1.50234 1.03050 0.98012 1.01028 1.96300 1.23705 1.40857 1.76585 1.96008 1.90926 1.45928 1.07125 1.20941 0.98527 0.92417 0.88297 0.93748 0.92811 0.90247 0.91377 0.91889 0.91265 0.82420 0.83599 0.76587 0.74693 0.82299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.88 37.16 0.37 -2.15 16 2 C 0.08 1.57 5.40 -4.04 -0.02 1.55 16 3 N -0.40 -9.48 2.52 -114.52 -0.29 -9.77 16 4 C -0.38 -9.87 7.80 -13.46 -0.10 -9.97 16 5 H 0.09 2.38 8.06 -52.49 -0.42 1.95 16 6 C 0.07 1.81 4.94 -15.16 -0.07 1.74 16 7 N -0.79 -20.64 13.57 56.00 0.76 -19.88 16 8 Si 0.90 18.67 29.72 -169.99 -5.05 13.62 16 9 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 10 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 12 C 0.49 11.69 7.26 -12.56 -0.09 11.60 16 13 O -0.56 -15.88 16.80 5.35 0.09 -15.79 16 14 C -0.14 -2.64 5.22 -104.94 -0.55 -3.19 16 15 C -0.01 -0.17 7.27 -39.57 -0.29 -0.46 16 16 C -0.20 -2.27 9.87 -39.81 -0.39 -2.67 16 17 C 0.28 3.64 6.74 -83.86 -0.57 3.07 16 18 N -0.85 -8.33 8.34 32.41 0.27 -8.05 16 19 C -0.08 -1.26 6.89 -79.79 -0.55 -1.81 16 20 N 0.01 0.20 4.98 34.04 0.17 0.37 16 21 O -0.18 -3.60 19.16 -31.57 -0.60 -4.21 16 22 O -0.22 -3.67 16.51 -31.57 -0.52 -4.19 16 23 C 0.02 0.35 9.14 -39.18 -0.36 -0.01 16 24 H 0.04 0.53 6.02 -51.93 -0.31 0.22 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.36 7.29 -51.93 -0.38 0.98 16 27 H 0.07 1.40 7.47 -51.93 -0.39 1.02 16 28 H 0.06 1.03 4.50 -51.93 -0.23 0.80 16 29 H 0.28 6.54 8.26 -40.82 -0.34 6.20 16 30 H 0.16 2.04 3.76 -52.48 -0.20 1.84 16 31 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.40 2.58 8.92 -40.82 -0.36 2.22 16 33 H 0.41 4.39 6.08 -40.82 -0.25 4.14 16 34 H 0.16 3.14 7.55 -52.49 -0.40 2.74 16 LS Contribution 297.44 15.07 4.48 4.48 Total: -1.00 -31.90 297.44 -6.24 -38.14 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -2.92 Total: 7.57 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.63 Total: -2.29 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.91 Total: -37.33 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -1.04 Total: -24.19 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.05 Total: 13.62 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.90 -6.24 -38.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.411 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds