Wall clock time and date at job start Tue Mar 31 2020 00:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46708 * 2 1 4 4 C 1.33305 * 120.00219 * 68.36995 * 3 2 1 5 5 H 1.07990 * 119.99878 * 234.51177 * 4 3 2 6 6 C 1.46788 * 119.99899 * 54.51163 * 4 3 2 7 7 N 1.29316 * 120.00046 * 35.69449 * 6 4 3 8 8 Si 1.86803 * 119.99991 * 215.69331 * 6 4 3 9 9 H 1.48496 * 109.47024 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47028 * 119.99661 * 8 6 4 11 11 H 1.48495 * 109.46961 * 239.99991 * 8 6 4 12 12 C 1.34773 * 120.00028 * 248.36259 * 3 2 1 13 13 O 1.21523 * 120.00307 * 184.99976 * 12 3 2 14 14 C 1.47337 * 119.99951 * 5.00648 * 12 3 2 15 15 C 1.39910 * 120.07920 * 36.96893 * 14 12 3 16 16 C 1.36540 * 120.04930 * 179.97438 * 15 14 12 17 17 C 1.39279 * 120.20866 * 359.97438 * 16 15 14 18 18 N 1.38962 * 119.92679 * 180.02562 * 17 16 15 19 19 C 1.39270 * 120.14356 * 359.97438 * 17 16 15 20 20 N 1.48016 * 120.02011 * 180.02562 * 19 17 16 21 21 O 1.31701 * 120.00346 * 185.54388 * 20 19 17 22 22 O 1.31703 * 120.00301 * 5.55158 * 20 19 17 23 23 C 1.37609 * 119.95617 * 359.78932 * 19 17 16 24 24 H 1.08994 * 109.47411 * 93.12112 * 1 2 3 25 25 H 1.09001 * 109.46910 * 213.12459 * 1 2 3 26 26 H 1.09000 * 109.47644 * 333.11989 * 1 2 3 27 27 H 1.09003 * 109.47391 * 119.99443 * 2 1 3 28 28 H 1.08996 * 109.47412 * 240.00270 * 2 1 3 29 29 H 0.96997 * 120.00100 * 180.02562 * 7 6 4 30 30 H 1.08003 * 119.97108 * 0.02562 * 15 14 12 31 31 H 1.07997 * 119.89834 * 179.97438 * 16 15 14 32 32 H 0.97002 * 119.99584 * 28.07477 * 18 17 16 33 33 H 0.96999 * 120.00098 * 208.06351 * 18 17 16 34 34 H 1.07996 * 120.10466 * 180.24748 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 1.8391 2.1515 1.0731 5 1 1.3502 3.1094 0.9747 6 6 2.3065 1.6977 2.3885 7 7 3.3991 1.0128 2.4856 8 14 1.3230 2.1096 3.9224 9 1 0.1217 2.8962 3.5437 10 1 0.9004 0.8531 4.5916 11 1 2.1645 2.9062 4.8509 12 6 2.6485 1.8732 -1.0849 13 8 3.1335 2.9870 -1.0530 14 6 2.7496 1.0606 -2.3098 15 6 1.6852 0.2386 -2.6958 16 6 1.7793 -0.5138 -3.8313 17 6 2.9333 -0.4663 -4.6098 18 7 3.0225 -1.2341 -5.7646 19 6 3.9974 0.3498 -4.2340 20 7 5.2222 0.3986 -5.0636 21 8 6.2691 1.0840 -4.6528 22 8 5.2652 -0.2433 -6.2128 23 6 3.9074 1.1144 -3.0934 24 1 -0.3634 -0.0559 -1.0261 25 1 -0.3633 -0.8607 0.5616 26 1 -0.3634 0.9166 0.4646 27 1 1.8933 -0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.7077 0.7126 3.3548 30 1 0.7882 0.1999 -2.0955 31 1 0.9564 -1.1477 -4.1267 32 1 2.2187 -1.4692 -6.2539 33 1 3.8886 -1.5347 -6.0814 34 1 4.7296 1.7511 -2.8019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426966.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:36 Heat of formation + Delta-G solvation = 22.197819 kcal Electronic energy + Delta-G solvation = -21719.196393 eV Core-core repulsion = 18235.855704 eV Total energy + Delta-G solvation = -3483.340688 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.85763 -40.42563 -39.05483 -37.00391 -36.29803 -35.24513 -34.38407 -32.95012 -31.26244 -30.68671 -27.89059 -26.60860 -24.41902 -23.86183 -23.55560 -21.51407 -19.59569 -19.26048 -18.63557 -18.56867 -18.19158 -17.33178 -17.19018 -16.93668 -16.30285 -15.91692 -15.33794 -15.26480 -15.15030 -14.84629 -14.27126 -13.86394 -13.46671 -13.39513 -12.87989 -12.86006 -12.72869 -12.52282 -12.34869 -12.29122 -12.05754 -11.96659 -11.83614 -11.58774 -10.97942 -10.62788 -10.44386 -9.46557 -9.12239 -8.44349 -6.00665 -1.76873 -0.23472 0.03972 0.08638 1.34531 1.43323 1.57232 1.86606 2.27184 2.44002 2.46286 2.76508 2.98397 3.19837 3.61963 3.73263 3.81768 3.94137 4.25578 4.37149 4.47444 4.59593 4.69568 4.72813 4.84722 5.04417 5.14488 5.25745 5.31189 5.32483 5.60903 5.62712 6.03302 6.31270 6.51328 6.63197 7.16047 7.42708 8.19693 8.46997 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028281 B = 0.004903 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.833712 B = 5709.820630 C = 6318.350183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.083 3.917 3 N -0.412 5.412 4 C -0.414 4.414 5 H 0.057 0.943 6 C 0.037 3.963 7 N -0.835 5.835 8 Si 0.974 3.026 9 H -0.256 1.256 10 H -0.256 1.256 11 H -0.283 1.283 12 C 0.472 3.528 13 O -0.629 6.629 14 C -0.161 4.161 15 C -0.001 4.001 16 C -0.165 4.165 17 C 0.309 3.691 18 N -0.817 5.817 19 C -0.091 4.091 20 N 0.015 4.985 21 O -0.286 6.286 22 O -0.173 6.173 23 C 0.001 3.999 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.284 0.716 30 H 0.177 0.823 31 H 0.211 0.789 32 H 0.429 0.571 33 H 0.416 0.584 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 -12.486 -10.943 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.039 4.039 3 N -0.127 5.127 4 C -0.542 4.542 5 H 0.075 0.925 6 C -0.180 4.180 7 N -0.463 5.463 8 Si 0.795 3.205 9 H -0.180 1.180 10 H -0.180 1.180 11 H -0.209 1.209 12 C 0.264 3.736 13 O -0.516 6.516 14 C -0.168 4.168 15 C -0.021 4.021 16 C -0.186 4.186 17 C 0.192 3.808 18 N -0.366 5.366 19 C -0.187 4.187 20 N 0.472 4.528 21 O -0.450 6.450 22 O -0.365 6.365 23 C -0.020 4.020 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.194 0.806 31 H 0.228 0.772 32 H 0.264 0.736 33 H 0.254 0.746 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.382 -12.024 -10.424 19.001 hybrid contribution 1.147 0.675 0.562 1.444 sum -9.235 -11.349 -9.862 17.645 Atomic orbital electron populations 1.22176 0.93455 1.03142 1.02927 1.22093 0.96322 0.83785 1.01688 1.42359 1.46617 1.12046 1.11718 1.19583 1.43857 1.05649 0.85119 0.92541 1.28048 0.93154 0.93975 1.02836 1.69257 1.17338 1.31444 1.28242 0.85263 0.79462 0.79267 0.76494 1.17969 1.17993 1.20859 1.19169 0.80149 0.87844 0.86451 1.90560 1.51723 1.23990 1.85377 1.19958 0.96005 1.03519 0.97301 1.22080 0.97380 0.88077 0.94564 1.21098 0.98586 1.04919 0.94045 1.17795 0.90531 0.84928 0.87562 1.43173 1.15563 1.53513 1.24302 1.20041 0.87265 1.12144 0.99248 1.50373 1.03368 0.97913 1.01102 1.96337 1.25146 1.45374 1.78100 1.95940 1.90457 1.43503 1.06619 1.20593 0.97979 0.93471 0.89983 0.89773 0.90177 0.92742 0.93758 0.89247 0.90459 0.80584 0.77226 0.73554 0.74566 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 9.88 71.98 0.71 -3.61 16 2 C 0.08 3.04 5.40 86.38 0.47 3.51 16 3 N -0.41 -20.09 2.52 -634.51 -1.60 -21.69 16 4 C -0.41 -22.67 7.80 86.71 0.68 -22.00 16 5 H 0.06 3.35 8.06 -2.92 -0.02 3.33 16 6 C 0.04 1.88 4.94 87.30 0.43 2.32 16 7 N -0.83 -44.96 13.57 23.26 0.32 -44.64 16 8 Si 0.97 39.12 29.72 68.60 2.04 41.16 16 9 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 10 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 11 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 12 C 0.47 24.03 7.26 86.64 0.63 24.66 16 13 O -0.63 -38.94 16.80 -3.79 -0.06 -39.00 16 14 C -0.16 -6.11 5.22 -20.07 -0.10 -6.22 16 15 C 0.00 -0.03 7.27 22.28 0.16 0.13 16 16 C -0.16 -2.58 9.87 22.12 0.22 -2.36 16 17 C 0.31 6.34 6.74 38.51 0.26 6.60 16 18 N -0.82 -10.54 8.34 -51.36 -0.43 -10.97 16 19 C -0.09 -2.88 6.89 36.48 0.25 -2.63 16 20 N 0.02 0.55 4.98 -46.23 -0.23 0.32 16 21 O -0.29 -12.31 19.16 3.51 0.07 -12.25 16 22 O -0.17 -5.26 16.51 3.51 0.06 -5.21 16 23 C 0.00 0.04 9.14 22.53 0.21 0.24 16 24 H 0.08 1.58 6.02 -2.39 -0.01 1.57 16 25 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.79 7.29 -2.39 -0.02 1.77 16 27 H 0.04 1.82 7.47 -2.39 -0.02 1.80 16 28 H 0.09 2.71 4.50 -2.39 -0.01 2.70 16 29 H 0.28 13.84 8.26 -92.71 -0.77 13.07 16 30 H 0.18 3.66 3.76 -2.91 -0.01 3.65 16 31 H 0.21 0.87 8.06 -2.91 -0.02 0.84 16 32 H 0.43 1.93 8.92 -92.71 -0.83 1.11 16 33 H 0.42 6.32 6.08 -92.71 -0.56 5.75 16 34 H 0.12 5.50 7.55 -2.91 -0.02 5.48 16 Total: -1.00 -81.44 297.44 3.87 -77.57 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -0.20 Total: 14.05 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 3.91 Total: 0.65 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -1.94 Total: -76.97 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: 0.06 Total: -56.45 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.04 Total: 41.16 kcal Total: -81.44 3.87 -77.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426966.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.765 kcal (2) G-P(sol) polarization free energy of solvation -81.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds