Wall clock time and date at job start Tue Mar 31 2020 00:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47386 * 2 1 4 4 C 1.50708 * 109.47042 * 119.99894 * 2 1 3 5 5 H 1.07995 * 119.99984 * 119.99908 * 4 2 1 6 6 C 1.37873 * 119.99807 * 299.99945 * 4 2 1 7 7 N 1.31513 * 120.00168 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99984 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47348 * 60.00035 * 8 6 4 10 10 H 1.48502 * 109.47335 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47378 * 299.99963 * 8 6 4 12 12 N 1.46494 * 109.47150 * 239.99625 * 2 1 3 13 13 C 1.34776 * 120.00178 * 85.00499 * 12 2 1 14 14 O 1.21588 * 119.99444 * 359.97438 * 13 12 2 15 15 N 1.34775 * 120.00566 * 179.97438 * 13 12 2 16 16 C 1.39943 * 120.00318 * 185.31147 * 15 13 12 17 17 C 1.38886 * 120.06911 * 213.04271 * 16 15 13 18 18 C 1.38095 * 119.92613 * 180.30084 * 17 16 15 19 19 C 1.38300 * 120.07355 * 359.95422 * 18 17 16 20 20 C 1.38263 * 120.13862 * 0.04636 * 19 18 17 21 21 N 1.48020 * 119.96563 * 179.97438 * 20 19 18 22 22 O 1.21795 * 119.99734 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00075 * 0.02626 * 21 20 19 24 24 C 1.38133 * 120.06735 * 359.97438 * 20 19 18 25 25 H 1.09002 * 109.47238 * 60.00020 * 1 2 3 26 26 H 1.08995 * 109.47670 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47421 * 300.00407 * 1 2 3 28 28 H 0.97007 * 120.00229 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99986 * 265.00289 * 12 2 1 30 30 H 0.97003 * 119.99720 * 5.31721 * 15 13 12 31 31 H 1.08000 * 120.03818 * 0.25247 * 17 16 15 32 32 H 1.07997 * 119.96493 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.93532 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.03499 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.8062 -1.1209 4.0083 10 1 1.8268 -0.4197 5.2205 11 1 1.8256 -2.5201 4.0079 12 7 2.0182 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8575 1.1612 -2.4118 15 7 2.5968 -0.6536 -3.4574 16 6 2.8363 0.0672 -4.6327 17 6 2.6263 -0.5287 -5.8695 18 6 2.8695 0.1832 -7.0275 19 6 3.3209 1.4886 -6.9566 20 6 3.5310 2.0847 -5.7269 21 7 4.0147 3.4818 -5.6555 22 8 4.2004 4.0073 -4.5725 23 8 4.2270 4.1059 -6.6796 24 6 3.2899 1.3777 -4.5649 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7088 1.1615 3.4844 29 1 2.2489 -1.6319 -1.1525 30 1 2.7544 -1.6105 -3.4346 31 1 2.2739 -1.5481 -5.9256 32 1 2.7068 -0.2797 -7.9896 33 1 3.5100 2.0435 -7.8636 34 1 3.4538 1.8440 -3.6046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:00 Heat of formation + Delta-G solvation = -3.572513 kcal Electronic energy + Delta-G solvation = -21016.958207 eV Core-core repulsion = 17532.500033 eV Total energy + Delta-G solvation = -3484.458174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10477 -40.54302 -38.76599 -36.46645 -35.40784 -34.52957 -32.57076 -31.98101 -30.26207 -28.46205 -26.60009 -25.34043 -23.58193 -22.49980 -21.40261 -20.06940 -19.41737 -18.69178 -18.26490 -17.43177 -16.75015 -16.67400 -16.01046 -15.58594 -15.03514 -14.67956 -14.25097 -14.11735 -13.38371 -13.30949 -12.55035 -12.50030 -12.21817 -11.89096 -11.48121 -11.19548 -11.15183 -11.06636 -11.03633 -10.90659 -10.62574 -10.39613 -10.31046 -9.82453 -9.58962 -9.15864 -8.67281 -8.51337 -8.04505 -6.19556 -4.29906 -0.16000 0.84292 1.34332 1.44648 2.78157 3.09638 3.21069 3.27290 3.28018 3.64314 4.23703 4.30278 4.53091 4.58069 4.64415 4.85201 4.88754 5.13219 5.33229 5.61665 5.75071 5.84426 5.95397 6.39359 6.62128 6.64356 6.85053 6.90453 7.06034 7.27919 7.51765 7.68098 7.72456 7.84446 8.05347 8.54535 8.69716 8.99150 9.37746 10.86413 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.003803 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.029858 B = 7360.931439 C = 7958.613008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.279 3.721 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.712 5.712 13 C 0.689 3.311 14 O -0.576 6.576 15 N -0.693 5.693 16 C 0.191 3.809 17 C -0.109 4.109 18 C -0.096 4.096 19 C -0.088 4.088 20 C -0.022 4.022 21 N 0.028 4.972 22 O -0.149 6.149 23 O -0.168 6.168 24 C -0.064 4.064 25 H 0.015 0.985 26 H 0.026 0.974 27 H 0.092 0.908 28 H 0.267 0.733 29 H 0.388 0.612 30 H 0.409 0.591 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.614 -6.349 -17.346 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.177 3.823 3 H 0.070 0.930 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.362 5.362 13 C 0.389 3.611 14 O -0.453 6.453 15 N -0.342 5.342 16 C 0.092 3.908 17 C -0.131 4.131 18 C -0.115 4.115 19 C -0.108 4.108 20 C -0.105 4.105 21 N 0.548 4.452 22 O -0.368 6.368 23 O -0.382 6.382 24 C -0.085 4.085 25 H 0.034 0.966 26 H 0.046 0.954 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.220 0.780 30 H 0.245 0.755 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.986 -5.819 -17.092 18.301 hybrid contribution 0.510 -1.055 0.945 1.506 sum 3.497 -6.873 -16.147 17.894 Atomic orbital electron populations 1.22112 0.98374 0.99157 1.01084 1.18768 0.90978 0.93874 0.78633 0.93016 1.21123 1.32931 1.13449 0.90146 0.92073 1.24874 0.94716 0.94923 0.99061 1.69886 1.35487 1.22222 1.24212 0.86472 0.79192 0.79502 0.81710 1.20126 1.21036 1.20167 1.45924 1.67948 1.13512 1.08853 1.16224 0.78790 0.85642 0.80453 1.90941 1.56326 1.14191 1.83834 1.42923 1.69972 1.11624 1.09642 1.17213 0.96142 0.91262 0.86177 1.21336 0.99372 1.01668 0.90678 1.20897 0.98944 0.92777 0.98882 1.20942 0.97979 0.95672 0.96220 1.20897 1.10147 0.83063 0.96428 1.43608 0.98136 1.02976 1.00461 1.94610 1.54805 1.70938 1.16428 1.94490 1.55059 1.63566 1.25091 1.21150 0.94117 0.93954 0.99314 0.96596 0.95444 0.88931 0.92344 0.77953 0.75477 0.83873 0.83415 0.83195 0.81271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.26 37.15 0.34 -3.23 16 2 C 0.28 6.81 2.56 -69.09 -0.18 6.64 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -13.71 8.73 -34.44 -0.30 -14.01 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 N -0.71 -13.68 5.07 -59.82 -0.30 -13.98 16 13 C 0.69 12.79 8.27 -86.92 -0.72 12.08 16 14 O -0.58 -13.21 13.69 5.29 0.07 -13.14 16 15 N -0.69 -8.99 5.35 -14.23 -0.08 -9.07 16 16 C 0.19 2.40 6.28 -83.69 -0.53 1.87 16 17 C -0.11 -0.93 9.96 -39.39 -0.39 -1.33 16 18 C -0.10 -0.73 10.04 -39.61 -0.40 -1.13 16 19 C -0.09 -0.89 9.55 -39.55 -0.38 -1.27 16 20 C -0.02 -0.31 6.85 -79.97 -0.55 -0.86 16 21 N 0.03 0.46 4.45 33.95 0.15 0.61 16 22 O -0.15 -2.73 18.45 -29.46 -0.54 -3.28 16 23 O -0.17 -2.63 18.44 -29.46 -0.54 -3.17 16 24 C -0.06 -0.97 8.17 -39.40 -0.32 -1.29 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.44 6.07 -51.92 -0.32 2.13 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.39 6.16 8.56 -40.82 -0.35 5.81 16 30 H 0.41 3.64 8.83 -40.82 -0.36 3.28 16 31 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 33 H 0.15 1.25 7.60 -52.49 -0.40 0.85 16 34 H 0.17 3.13 5.95 -52.48 -0.31 2.81 16 LS Contribution 305.65 15.07 4.61 4.61 Total: -1.00 -31.85 305.65 -7.90 -39.75 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.36 Total: 7.09 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.51 Total: -0.84 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.40 Total: -46.10 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -1.01 Total: -19.58 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.85 -7.90 -39.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.181 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds