Wall clock time and date at job start Tue Mar 31 2020 00:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47386 * 2 1 4 4 C 1.50708 * 109.47042 * 119.99894 * 2 1 3 5 5 H 1.07995 * 119.99984 * 119.99908 * 4 2 1 6 6 C 1.37873 * 119.99807 * 299.99945 * 4 2 1 7 7 N 1.31513 * 120.00168 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99984 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47348 * 60.00035 * 8 6 4 10 10 H 1.48502 * 109.47335 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47378 * 299.99963 * 8 6 4 12 12 N 1.46494 * 109.47150 * 239.99625 * 2 1 3 13 13 C 1.34776 * 120.00178 * 85.00499 * 12 2 1 14 14 O 1.21588 * 119.99444 * 359.97438 * 13 12 2 15 15 N 1.34775 * 120.00566 * 179.97438 * 13 12 2 16 16 C 1.39943 * 120.00318 * 185.31147 * 15 13 12 17 17 C 1.38886 * 120.06911 * 213.04271 * 16 15 13 18 18 C 1.38095 * 119.92613 * 180.30084 * 17 16 15 19 19 C 1.38300 * 120.07355 * 359.95422 * 18 17 16 20 20 C 1.38263 * 120.13862 * 0.04636 * 19 18 17 21 21 N 1.48020 * 119.96563 * 179.97438 * 20 19 18 22 22 O 1.21795 * 119.99734 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00075 * 0.02626 * 21 20 19 24 24 C 1.38133 * 120.06735 * 359.97438 * 20 19 18 25 25 H 1.09002 * 109.47238 * 60.00020 * 1 2 3 26 26 H 1.08995 * 109.47670 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47421 * 300.00407 * 1 2 3 28 28 H 0.97007 * 120.00229 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99986 * 265.00289 * 12 2 1 30 30 H 0.97003 * 119.99720 * 5.31721 * 15 13 12 31 31 H 1.08000 * 120.03818 * 0.25247 * 17 16 15 32 32 H 1.07997 * 119.96493 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.93532 * 180.02562 * 19 18 17 34 34 H 1.08005 * 120.03499 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.8062 -1.1209 4.0083 10 1 1.8268 -0.4197 5.2205 11 1 1.8256 -2.5201 4.0079 12 7 2.0182 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8575 1.1612 -2.4118 15 7 2.5968 -0.6536 -3.4574 16 6 2.8363 0.0672 -4.6327 17 6 2.6263 -0.5287 -5.8695 18 6 2.8695 0.1832 -7.0275 19 6 3.3209 1.4886 -6.9566 20 6 3.5310 2.0847 -5.7269 21 7 4.0147 3.4818 -5.6555 22 8 4.2004 4.0073 -4.5725 23 8 4.2270 4.1059 -6.6796 24 6 3.2899 1.3777 -4.5649 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7088 1.1615 3.4844 29 1 2.2489 -1.6319 -1.1525 30 1 2.7544 -1.6105 -3.4346 31 1 2.2739 -1.5481 -5.9256 32 1 2.7068 -0.2797 -7.9896 33 1 3.5100 2.0435 -7.8636 34 1 3.4538 1.8440 -3.6046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:00 Heat of formation + Delta-G solvation = -25.955870 kcal Electronic energy + Delta-G solvation = -21017.928822 eV Core-core repulsion = 17532.500033 eV Total energy + Delta-G solvation = -3485.428789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.31201 -41.79017 -39.95985 -37.72610 -37.02584 -35.95335 -34.40949 -32.90153 -31.62717 -30.01045 -27.71762 -27.36156 -24.73978 -23.59038 -22.86414 -21.69580 -20.57704 -20.08963 -19.60868 -18.66945 -18.17753 -17.64242 -17.54012 -16.82154 -16.69728 -15.95959 -15.76992 -15.21909 -14.83004 -14.44397 -14.33712 -13.78729 -13.29212 -13.16778 -13.01840 -12.93506 -12.77954 -12.74748 -12.36477 -12.34953 -12.29199 -12.17246 -11.82730 -11.31628 -11.14788 -10.62539 -10.53283 -9.98045 -9.38717 -8.19324 -6.37420 -1.26092 -0.05530 0.28587 0.36508 1.44060 1.47030 1.53628 1.58718 1.96892 2.39756 2.44026 3.11535 3.23016 3.53009 3.65124 3.79133 3.98494 4.06727 4.46821 4.68605 4.74589 4.88883 4.93541 4.98870 5.05544 5.09649 5.23320 5.34547 5.54161 5.58789 5.61885 5.78455 6.05646 6.13862 6.44162 6.69865 7.11487 7.31055 7.55307 8.87001 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.003803 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.029858 B = 7360.931439 C = 7958.613008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.287 3.713 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.261 1.261 12 N -0.707 5.707 13 C 0.689 3.311 14 O -0.626 6.626 15 N -0.670 5.670 16 C 0.166 3.834 17 C -0.074 4.074 18 C -0.073 4.073 19 C -0.072 4.072 20 C -0.046 4.046 21 N 0.029 4.971 22 O -0.242 6.242 23 O -0.126 6.126 24 C -0.097 4.097 25 H 0.010 0.990 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.266 0.734 29 H 0.407 0.593 30 H 0.432 0.568 31 H 0.192 0.808 32 H 0.206 0.794 33 H 0.176 0.824 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 -10.238 -20.591 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.183 3.817 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.360 5.360 13 C 0.389 3.611 14 O -0.507 6.507 15 N -0.320 5.320 16 C 0.069 3.931 17 C -0.095 4.095 18 C -0.091 4.091 19 C -0.092 4.092 20 C -0.130 4.130 21 N 0.544 4.456 22 O -0.438 6.438 23 O -0.355 6.355 24 C -0.119 4.119 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.243 0.757 30 H 0.273 0.727 31 H 0.210 0.790 32 H 0.223 0.777 33 H 0.194 0.806 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.098 -9.763 -20.209 22.657 hybrid contribution 0.489 0.118 1.602 1.679 sum 3.587 -9.645 -18.607 21.263 Atomic orbital electron populations 1.21913 0.98178 0.99654 0.99510 1.18289 0.91075 0.91618 0.80714 0.98562 1.21487 1.32851 1.13762 0.90497 0.90467 1.25809 0.94819 0.95544 1.02393 1.70054 1.36878 1.23875 1.24766 0.85365 0.78552 0.78775 0.77437 1.19709 1.21376 1.18528 1.45422 1.68366 1.14204 1.07966 1.16332 0.78435 0.84945 0.81383 1.90929 1.58250 1.16704 1.84812 1.42428 1.68844 1.12482 1.08286 1.17499 0.97724 0.90524 0.87395 1.21909 0.95702 1.03316 0.88551 1.21602 0.95707 0.91029 1.00799 1.21496 0.95860 0.96869 0.94989 1.21116 1.12545 0.81500 0.97818 1.44023 0.97574 1.04102 0.99922 1.94633 1.59487 1.72499 1.17220 1.94405 1.52356 1.64138 1.24647 1.20897 0.97208 0.95851 0.97959 0.97110 0.93646 0.91523 0.92509 0.75688 0.72732 0.79048 0.77696 0.80627 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.66 9.26 71.98 0.67 -6.00 16 2 C 0.29 14.61 2.56 44.25 0.11 14.73 16 3 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 4 C -0.55 -28.24 8.73 25.60 0.22 -28.02 16 5 H 0.08 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -52.51 11.32 21.45 0.24 -52.27 16 8 Si 0.97 41.28 29.54 68.60 2.03 43.31 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 12 N -0.71 -27.62 5.07 -461.43 -2.34 -29.96 16 13 C 0.69 26.43 8.27 179.06 1.48 27.91 16 14 O -0.63 -31.04 13.69 -3.99 -0.05 -31.09 16 15 N -0.67 -16.59 5.35 -317.18 -1.70 -18.28 16 16 C 0.17 3.91 6.28 38.15 0.24 4.15 16 17 C -0.07 -0.85 9.96 22.39 0.22 -0.63 16 18 C -0.07 -0.62 10.04 22.25 0.22 -0.40 16 19 C -0.07 -1.18 9.55 22.29 0.21 -0.96 16 20 C -0.05 -1.30 6.85 36.36 0.25 -1.05 16 21 N 0.03 1.01 4.45 -46.50 -0.21 0.80 16 22 O -0.24 -10.02 18.45 18.89 0.35 -9.68 16 23 O -0.13 -3.89 18.44 18.89 0.35 -3.54 16 24 C -0.10 -3.11 8.17 22.39 0.18 -2.93 16 25 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 26 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.07 3.68 6.07 -2.38 -0.01 3.66 16 28 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 29 H 0.41 12.50 8.56 -92.70 -0.79 11.70 16 30 H 0.43 6.39 8.83 -92.71 -0.82 5.57 16 31 H 0.19 0.48 8.06 -2.91 -0.02 0.45 16 32 H 0.21 -0.33 8.06 -2.91 -0.02 -0.36 16 33 H 0.18 2.00 7.60 -2.91 -0.02 1.98 16 34 H 0.12 5.05 5.95 -2.91 -0.02 5.03 16 Total: -1.00 -79.31 305.65 2.49 -76.82 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -0.44 Total: 15.85 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 4.26 Total: 8.03 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -4.00 Total: -99.70 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: 0.64 Total: -44.30 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -79.31 2.49 -76.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.863 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds