Wall clock time and date at job start Tue Mar 31 2020 00:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47126 * 2 1 4 4 C 1.50698 * 109.47490 * 240.00199 * 2 1 3 5 5 H 1.07995 * 120.00392 * 240.00308 * 4 2 1 6 6 C 1.37877 * 119.99720 * 59.99819 * 4 2 1 7 7 N 1.31512 * 120.00559 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00021 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46991 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46832 * 119.99926 * 8 6 4 11 11 H 1.48493 * 109.47162 * 240.00277 * 8 6 4 12 12 N 1.46496 * 109.47166 * 120.00304 * 2 1 3 13 13 C 1.34785 * 120.00139 * 275.00152 * 12 2 1 14 14 O 1.21582 * 119.99633 * 359.97438 * 13 12 2 15 15 N 1.34775 * 119.99830 * 179.97438 * 13 12 2 16 16 C 1.39949 * 119.99347 * 174.68638 * 15 13 12 17 17 C 1.38884 * 120.07323 * 326.56829 * 16 15 13 18 18 C 1.38092 * 119.93189 * 179.79353 * 17 16 15 19 19 C 1.38308 * 120.06626 * 0.48378 * 18 17 16 20 20 C 1.38257 * 120.14098 * 359.74143 * 19 18 17 21 21 N 1.48013 * 119.96414 * 179.97438 * 20 19 18 22 22 O 1.21805 * 120.00022 * 180.02562 * 21 20 19 23 23 O 1.21800 * 120.00077 * 0.02660 * 21 20 19 24 24 C 1.38134 * 120.06946 * 0.03056 * 20 19 18 25 25 H 1.08991 * 109.47246 * 299.99916 * 1 2 3 26 26 H 1.08999 * 109.46953 * 59.99994 * 1 2 3 27 27 H 1.08997 * 109.47325 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00905 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00324 * 94.99427 * 12 2 1 30 30 H 0.96996 * 120.00521 * 354.68704 * 15 13 12 31 31 H 1.07998 * 120.03270 * 0.02562 * 17 16 15 32 32 H 1.07992 * 119.96790 * 180.21101 * 18 17 16 33 33 H 1.08002 * 119.92598 * 179.77352 * 19 18 17 34 34 H 1.08004 * 120.03696 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 3.1456 -2.2875 -3.6038 10 1 1.1661 -1.5864 -4.8161 11 1 3.1467 -0.1871 -4.8164 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3572 14 8 1.8583 1.1614 2.4117 15 7 2.5958 -0.6539 3.4577 16 6 2.8353 0.0669 4.6331 17 6 3.2922 1.3767 4.5655 18 6 3.5234 2.0866 5.7271 19 6 3.3101 1.4913 6.9571 20 6 2.8597 0.1861 7.0279 21 7 2.6332 -0.4474 8.3463 22 8 2.2369 -1.5974 8.4095 23 8 2.8431 0.1814 9.3682 24 6 2.6220 -0.5279 5.8695 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7089 1.1615 -3.4843 29 1 2.2490 -1.6318 1.1526 30 1 2.7528 -1.6108 3.4350 31 1 3.4628 1.8407 3.6053 32 1 3.8754 3.1062 5.6751 33 1 3.4952 2.0475 7.8642 34 1 2.2706 -1.5476 5.9254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050337050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:02 Heat of formation + Delta-G solvation = -5.284493 kcal Electronic energy + Delta-G solvation = -20762.906632 eV Core-core repulsion = 17278.374221 eV Total energy + Delta-G solvation = -3484.532411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.27330 -40.58853 -38.78996 -36.66550 -35.44741 -34.55237 -32.63398 -31.99029 -30.33628 -28.51310 -26.65996 -25.38673 -23.29854 -22.95495 -21.43147 -20.17056 -19.30197 -18.86352 -18.37881 -17.62195 -16.83956 -16.68127 -15.98927 -15.62053 -15.10524 -14.54683 -14.44740 -14.16450 -13.45566 -13.33955 -12.57802 -12.50710 -12.16452 -11.92372 -11.66645 -11.33451 -11.24510 -11.20754 -11.14013 -10.94195 -10.64515 -10.41277 -10.36025 -9.87569 -9.58634 -9.18907 -8.72274 -8.55856 -8.08512 -6.24897 -4.34896 -0.24973 0.77439 1.27104 1.29147 2.76954 3.08529 3.15885 3.24379 3.26476 3.61074 4.20478 4.27129 4.46465 4.57237 4.67161 4.83419 5.00147 5.08367 5.19945 5.49692 5.82913 5.85742 5.99929 6.26408 6.59827 6.60564 6.81566 6.87793 7.02037 7.22947 7.47873 7.54214 7.63795 7.79910 8.00587 8.50470 8.65298 8.94545 9.33121 10.81148 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.042499 B = 0.003175 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.676040 B = 8817.455725 C = 9039.446644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.279 3.721 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.712 5.712 13 C 0.693 3.307 14 O -0.580 6.580 15 N -0.693 5.693 16 C 0.192 3.808 17 C -0.071 4.071 18 C -0.095 4.095 19 C -0.082 4.082 20 C -0.025 4.025 21 N 0.032 4.968 22 O -0.165 6.165 23 O -0.164 6.164 24 C -0.100 4.100 25 H 0.015 0.985 26 H 0.092 0.908 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.409 0.591 31 H 0.159 0.841 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 -1.582 14.135 15.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.178 3.822 3 H 0.069 0.931 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.363 5.363 13 C 0.393 3.607 14 O -0.457 6.457 15 N -0.342 5.342 16 C 0.094 3.906 17 C -0.091 4.091 18 C -0.115 4.115 19 C -0.102 4.102 20 C -0.108 4.108 21 N 0.551 4.449 22 O -0.380 6.380 23 O -0.379 6.379 24 C -0.122 4.122 25 H 0.034 0.966 26 H 0.111 0.889 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.221 0.779 30 H 0.244 0.756 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.026 -0.098 13.207 14.131 hybrid contribution 0.293 -1.614 -0.563 1.734 sum 5.319 -1.713 12.644 13.824 Atomic orbital electron populations 1.22119 0.98355 0.99277 1.01078 1.18763 0.90993 0.93770 0.78667 0.93107 1.21213 1.32766 1.13429 0.90123 0.91922 1.24882 0.94709 0.94931 0.99110 1.69898 1.35645 1.22342 1.24016 0.86360 0.78645 0.79499 0.82395 1.19715 1.20787 1.20794 1.45939 1.67881 1.13596 1.08853 1.16146 0.78630 0.85594 0.80336 1.90903 1.56612 1.14254 1.83961 1.42912 1.70016 1.11772 1.09451 1.17206 0.96178 0.92486 0.84773 1.21850 0.93081 0.93228 1.00984 1.21109 0.99410 1.00811 0.90145 1.20990 0.96955 0.91900 1.00404 1.20694 1.12584 0.95345 0.82220 1.43619 0.97654 1.00641 1.03018 1.94536 1.47418 1.02099 1.93969 1.94522 1.54985 1.64094 1.24337 1.20584 1.00304 1.02210 0.89130 0.96566 0.88927 0.95370 0.92457 0.77860 0.75561 0.82357 0.83236 0.83133 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.19 16 2 C 0.28 6.63 2.56 -69.09 -0.18 6.46 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -13.41 8.73 -34.44 -0.30 -13.71 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -23.79 11.32 55.43 0.63 -23.16 16 8 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 9 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -13.34 5.07 -59.82 -0.30 -13.64 16 13 C 0.69 12.35 8.27 -86.91 -0.72 11.64 16 14 O -0.58 -12.42 13.70 5.29 0.07 -12.35 16 15 N -0.69 -8.97 5.35 -14.22 -0.08 -9.04 16 16 C 0.19 2.40 6.28 -83.69 -0.53 1.88 16 17 C -0.07 -0.88 8.65 -39.40 -0.34 -1.22 16 18 C -0.10 -0.93 10.04 -39.61 -0.40 -1.32 16 19 C -0.08 -0.82 9.55 -39.55 -0.38 -1.20 16 20 C -0.02 -0.30 6.85 -79.98 -0.55 -0.84 16 21 N 0.03 0.43 4.45 33.95 0.15 0.58 16 22 O -0.16 -2.32 18.45 -29.46 -0.54 -2.86 16 23 O -0.16 -2.24 18.44 -29.46 -0.54 -2.78 16 24 C -0.10 -1.13 9.47 -39.39 -0.37 -1.51 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.45 16 29 H 0.39 6.11 8.56 -40.82 -0.35 5.76 16 30 H 0.41 3.88 8.83 -40.82 -0.36 3.52 16 31 H 0.16 2.24 6.42 -52.49 -0.34 1.91 16 32 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.15 1.23 7.60 -52.49 -0.40 0.83 16 34 H 0.15 1.52 7.61 -52.48 -0.40 1.12 16 LS Contribution 305.67 15.07 4.61 4.61 Total: -1.00 -29.90 305.67 -7.90 -37.80 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -3.36 Total: 7.50 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -3.51 Total: -1.38 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.40 Total: -45.26 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.01 Total: -17.99 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.90 -7.90 -37.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.517 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds