Wall clock time and date at job start Tue Mar 31 2020 00:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47126 * 2 1 4 4 C 1.50698 * 109.47490 * 240.00199 * 2 1 3 5 5 H 1.07995 * 120.00392 * 240.00308 * 4 2 1 6 6 C 1.37877 * 119.99720 * 59.99819 * 4 2 1 7 7 N 1.31512 * 120.00559 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00021 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46991 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46832 * 119.99926 * 8 6 4 11 11 H 1.48493 * 109.47162 * 240.00277 * 8 6 4 12 12 N 1.46496 * 109.47166 * 120.00304 * 2 1 3 13 13 C 1.34785 * 120.00139 * 275.00152 * 12 2 1 14 14 O 1.21582 * 119.99633 * 359.97438 * 13 12 2 15 15 N 1.34775 * 119.99830 * 179.97438 * 13 12 2 16 16 C 1.39949 * 119.99347 * 174.68638 * 15 13 12 17 17 C 1.38884 * 120.07323 * 326.56829 * 16 15 13 18 18 C 1.38092 * 119.93189 * 179.79353 * 17 16 15 19 19 C 1.38308 * 120.06626 * 0.48378 * 18 17 16 20 20 C 1.38257 * 120.14098 * 359.74143 * 19 18 17 21 21 N 1.48013 * 119.96414 * 179.97438 * 20 19 18 22 22 O 1.21805 * 120.00022 * 180.02562 * 21 20 19 23 23 O 1.21800 * 120.00077 * 0.02660 * 21 20 19 24 24 C 1.38134 * 120.06946 * 0.03056 * 20 19 18 25 25 H 1.08991 * 109.47246 * 299.99916 * 1 2 3 26 26 H 1.08999 * 109.46953 * 59.99994 * 1 2 3 27 27 H 1.08997 * 109.47325 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00905 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00324 * 94.99427 * 12 2 1 30 30 H 0.96996 * 120.00521 * 354.68704 * 15 13 12 31 31 H 1.07998 * 120.03270 * 0.02562 * 17 16 15 32 32 H 1.07992 * 119.96790 * 180.21101 * 18 17 16 33 33 H 1.08002 * 119.92598 * 179.77352 * 19 18 17 34 34 H 1.08004 * 120.03696 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 3.1456 -2.2875 -3.6038 10 1 1.1661 -1.5864 -4.8161 11 1 3.1467 -0.1871 -4.8164 12 7 2.0183 -0.6907 1.1961 13 6 2.1470 -0.0184 2.3572 14 8 1.8583 1.1614 2.4117 15 7 2.5958 -0.6539 3.4577 16 6 2.8353 0.0669 4.6331 17 6 3.2922 1.3767 4.5655 18 6 3.5234 2.0866 5.7271 19 6 3.3101 1.4913 6.9571 20 6 2.8597 0.1861 7.0279 21 7 2.6332 -0.4474 8.3463 22 8 2.2369 -1.5974 8.4095 23 8 2.8431 0.1814 9.3682 24 6 2.6220 -0.5279 5.8695 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7089 1.1615 -3.4843 29 1 2.2490 -1.6318 1.1526 30 1 2.7528 -1.6108 3.4350 31 1 3.4628 1.8407 3.6053 32 1 3.8754 3.1062 5.6751 33 1 3.4952 2.0475 7.8642 34 1 2.2706 -1.5476 5.9254 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:02 Heat of formation + Delta-G solvation = -24.035865 kcal Electronic energy + Delta-G solvation = -20763.719752 eV Core-core repulsion = 17278.374221 eV Total energy + Delta-G solvation = -3485.345531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.28030 -41.79544 -39.96416 -37.70073 -37.01891 -35.91438 -34.40076 -32.92795 -31.65767 -30.03034 -27.65171 -27.34765 -24.51880 -23.90132 -22.81412 -21.73362 -20.44550 -20.01306 -19.61307 -18.63074 -18.29037 -17.62643 -17.55426 -16.86945 -16.63360 -15.89268 -15.83309 -15.08464 -15.05360 -14.42956 -14.36659 -13.79281 -13.44970 -13.05128 -12.99431 -12.92289 -12.75670 -12.70062 -12.35117 -12.30646 -12.29523 -12.12904 -11.79249 -11.32419 -11.10499 -10.63307 -10.55725 -9.96685 -9.41001 -8.19198 -6.36088 -1.24379 -0.11489 0.29586 0.30294 1.44624 1.45636 1.54988 1.60315 1.96047 2.39319 2.42883 3.12088 3.25495 3.45170 3.64626 3.72431 3.96357 3.97989 4.36884 4.63970 4.72405 4.91105 4.91286 4.99498 5.05500 5.08641 5.24683 5.35787 5.55992 5.58226 5.60000 5.79530 6.06864 6.12808 6.48319 6.71528 7.09918 7.31979 7.54659 8.87303 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.042499 B = 0.003175 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.676040 B = 8817.455725 C = 9039.446644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.289 3.711 3 H 0.006 0.994 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.260 1.260 10 H -0.281 1.281 11 H -0.284 1.284 12 N -0.710 5.710 13 C 0.696 3.304 14 O -0.619 6.619 15 N -0.674 5.674 16 C 0.173 3.827 17 C -0.083 4.083 18 C -0.082 4.082 19 C -0.068 4.068 20 C -0.037 4.037 21 N 0.033 4.967 22 O -0.186 6.186 23 O -0.165 6.165 24 C -0.089 4.089 25 H 0.012 0.988 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.266 0.734 29 H 0.406 0.594 30 H 0.426 0.574 31 H 0.138 0.862 32 H 0.182 0.818 33 H 0.175 0.825 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 -2.448 14.986 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.185 3.815 3 H 0.024 0.976 4 C -0.584 4.584 5 H 0.093 0.907 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.184 1.184 10 H -0.207 1.207 11 H -0.210 1.210 12 N -0.362 5.362 13 C 0.396 3.604 14 O -0.499 6.499 15 N -0.324 5.324 16 C 0.075 3.925 17 C -0.104 4.104 18 C -0.101 4.101 19 C -0.088 4.088 20 C -0.121 4.121 21 N 0.549 4.451 22 O -0.397 6.397 23 O -0.382 6.382 24 C -0.112 4.112 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.241 0.759 30 H 0.265 0.735 31 H 0.156 0.844 32 H 0.199 0.801 33 H 0.192 0.808 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.017 -1.053 14.116 15.381 hybrid contribution 0.030 -1.254 -0.711 1.442 sum 6.047 -2.306 13.405 14.885 Atomic orbital electron populations 1.21944 0.98441 0.99510 0.99665 1.18294 0.90838 0.91909 0.80442 0.97601 1.21553 1.32617 1.13653 0.90593 0.90684 1.25749 0.94870 0.95557 1.02217 1.70041 1.36908 1.23853 1.24628 0.85311 0.78038 0.78539 0.78519 1.18352 1.20656 1.21045 1.45484 1.68323 1.14240 1.08117 1.16152 0.78248 0.85035 0.80937 1.90880 1.58128 1.16121 1.84751 1.42479 1.69089 1.12545 1.08282 1.17277 0.97698 0.92813 0.84683 1.21870 0.93804 0.93532 1.01213 1.21396 0.98029 1.01852 0.88861 1.21318 0.95006 0.91141 1.01372 1.20866 1.13625 0.96121 0.81496 1.43802 0.97323 1.00533 1.03432 1.94537 1.48365 1.02601 1.94191 1.94508 1.54802 1.63961 1.24893 1.20599 0.99402 1.02723 0.88432 0.96861 0.91393 0.94128 0.92505 0.75903 0.73450 0.84433 0.80056 0.80765 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.56 9.26 71.98 0.67 -5.90 16 2 C 0.29 13.93 2.56 44.24 0.11 14.04 16 3 H 0.01 0.35 7.58 -2.39 -0.02 0.33 16 4 C -0.55 -27.13 8.73 25.60 0.22 -26.91 16 5 H 0.08 3.46 7.74 -2.91 -0.02 3.44 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -50.36 11.32 21.45 0.24 -50.11 16 8 Si 0.97 40.13 29.54 68.60 2.03 42.16 16 9 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 10 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 N -0.71 -26.37 5.07 -461.42 -2.34 -28.71 16 13 C 0.70 24.75 8.27 179.05 1.48 26.23 16 14 O -0.62 -27.06 13.70 -3.97 -0.05 -27.12 16 15 N -0.67 -16.72 5.35 -317.18 -1.70 -18.42 16 16 C 0.17 4.10 6.28 38.15 0.24 4.34 16 17 C -0.08 -1.98 8.65 22.39 0.19 -1.79 16 18 C -0.08 -1.39 10.04 22.25 0.22 -1.17 16 19 C -0.07 -1.17 9.55 22.29 0.21 -0.96 16 20 C -0.04 -0.81 6.85 36.36 0.25 -0.56 16 21 N 0.03 0.83 4.45 -46.51 -0.21 0.62 16 22 O -0.19 -5.00 18.45 18.88 0.35 -4.65 16 23 O -0.16 -4.19 18.44 18.89 0.35 -3.84 16 24 C -0.09 -1.87 9.47 22.39 0.21 -1.66 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.41 12.21 8.56 -92.71 -0.79 11.41 16 30 H 0.43 7.33 8.83 -92.71 -0.82 6.51 16 31 H 0.14 3.94 6.42 -2.91 -0.02 3.92 16 32 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.17 2.19 7.60 -2.91 -0.02 2.16 16 34 H 0.17 2.97 7.61 -2.91 -0.02 2.95 16 Total: -1.00 -65.25 305.67 2.49 -62.76 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.44 Total: 20.33 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 4.26 Total: 6.97 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -4.00 Total: -96.62 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: 0.64 Total: -35.60 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -65.25 2.49 -62.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.726 kcal (2) G-P(sol) polarization free energy of solvation -65.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds