Wall clock time and date at job start Tue Mar 31 2020 00:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37098 * 120.00438 * 2 1 4 4 H 1.07997 * 120.00218 * 140.56979 * 3 2 1 5 5 C 1.38950 * 119.99536 * 320.57092 * 3 2 1 6 6 N 1.31410 * 119.99614 * 161.92394 * 5 3 2 7 7 Si 1.86800 * 120.00484 * 341.92054 * 5 3 2 8 8 H 1.48502 * 109.46888 * 92.80106 * 7 5 3 9 9 H 1.48494 * 109.47436 * 212.80432 * 7 5 3 10 10 H 1.48504 * 109.46789 * 332.80478 * 7 5 3 11 11 C 1.34779 * 119.99895 * 180.02562 * 2 1 3 12 12 O 1.21293 * 120.00177 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99738 * 359.97438 * 11 2 1 14 14 N 1.46502 * 109.47125 * 180.02562 * 13 11 2 15 15 C 1.39673 * 120.00089 * 179.97438 * 14 13 11 16 16 C 1.38932 * 120.07543 * 3.95622 * 15 14 13 17 17 C 1.38079 * 119.92444 * 180.02562 * 16 15 14 18 18 C 1.38317 * 120.07730 * 359.71824 * 17 16 15 19 19 C 1.38263 * 120.14553 * 0.55713 * 18 17 16 20 20 C 1.38129 * 120.07231 * 359.44642 * 19 18 17 21 21 N 1.48006 * 120.03217 * 180.29844 * 20 19 18 22 22 O 1.21792 * 120.00458 * 35.27634 * 21 20 19 23 23 O 1.21803 * 119.99509 * 215.27565 * 21 20 19 24 24 H 1.09003 * 109.47178 * 264.37827 * 1 2 3 25 25 H 1.09006 * 109.47282 * 24.37357 * 1 2 3 26 26 H 1.09000 * 109.47478 * 144.37562 * 1 2 3 27 27 H 0.97003 * 120.00004 * 179.97438 * 6 5 3 28 28 H 1.09002 * 109.47262 * 60.00242 * 13 11 2 29 29 H 1.08998 * 109.47386 * 300.00064 * 13 11 2 30 30 H 0.97002 * 119.99589 * 0.02562 * 14 13 11 31 31 H 1.08002 * 120.03532 * 359.97438 * 16 15 14 32 32 H 1.08002 * 119.96359 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.92610 * 180.27718 * 18 17 16 34 34 H 1.07991 * 119.95996 * 179.72120 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0462 1.2937 0.5940 5 6 1.6930 2.2536 -0.7643 6 7 2.1128 3.4725 -0.5094 7 14 0.4812 1.9547 -2.1542 8 1 -0.9045 2.1230 -1.6475 9 1 0.7306 2.9292 -3.2466 10 1 0.6542 0.5741 -2.6733 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0001 13 6 1.3852 -2.4723 -0.0005 14 7 2.3372 -3.5859 -0.0005 15 6 1.8715 -4.9027 0.0000 16 6 0.5086 -5.1593 -0.0824 17 6 0.0517 -6.4623 -0.0811 18 6 0.9495 -7.5116 -0.0037 19 6 2.3061 -7.2597 0.0841 20 6 2.7699 -5.9586 0.0834 21 7 4.2228 -5.6901 0.1708 22 8 5.0145 -6.4405 -0.3709 23 8 4.6267 -4.7186 0.7846 24 1 -0.3634 -0.1007 1.0227 25 1 -0.3634 0.9361 -0.4241 26 1 -0.3634 -0.8353 -0.5986 27 1 1.7936 4.2170 -1.0432 28 1 0.7583 -2.5298 -0.8903 29 1 0.7589 -2.5302 0.8897 30 1 3.2909 -3.4086 -0.0001 31 1 -0.1927 -4.3405 -0.1466 32 1 -1.0077 -6.6625 -0.1447 33 1 0.5897 -8.5299 -0.0074 34 1 3.0041 -8.0812 0.1489 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072072177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:43 Heat of formation + Delta-G solvation = -10.899308 kcal Electronic energy + Delta-G solvation = -21407.454931 eV Core-core repulsion = 17922.679044 eV Total energy + Delta-G solvation = -3484.775888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.25155 -41.02543 -40.22495 -37.76567 -37.08361 -36.31189 -34.22704 -32.91743 -31.32661 -28.96727 -28.05733 -27.26649 -26.14632 -23.61010 -23.00326 -20.96053 -20.22830 -19.74919 -19.16984 -18.90924 -18.36989 -17.74393 -17.26554 -16.92130 -16.62600 -15.83287 -15.59025 -15.22540 -15.15960 -14.78272 -14.56578 -14.24536 -14.03081 -13.57102 -13.44289 -13.28853 -12.75321 -12.70650 -12.50582 -12.31589 -12.26667 -12.07815 -11.86493 -11.45238 -11.13014 -10.61273 -10.47323 -9.79122 -8.87590 -8.55319 -6.25987 -1.01527 0.22834 0.33270 0.51600 1.17614 1.30899 1.44131 1.76414 1.90540 2.14566 2.50517 2.65038 2.88023 3.38512 3.65257 3.82146 4.01166 4.10102 4.13158 4.24540 4.28727 4.33265 4.59073 4.63272 4.81551 4.86853 5.11175 5.26398 5.33615 5.42572 5.56445 5.86663 5.97097 6.17824 6.45150 6.46154 6.83180 7.16378 7.69020 8.61756 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.004546 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.659280 B = 6157.256347 C = 6913.592648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.473 5.473 3 C -0.342 4.342 4 H 0.038 0.962 5 C 0.008 3.992 6 N -0.914 5.914 7 Si 0.964 3.036 8 H -0.228 1.228 9 H -0.294 1.294 10 H -0.255 1.255 11 C 0.442 3.558 12 O -0.614 6.614 13 C 0.114 3.886 14 N -0.729 5.729 15 C 0.262 3.738 16 C -0.202 4.202 17 C -0.002 4.002 18 C -0.163 4.163 19 C -0.025 4.025 20 C -0.153 4.153 21 N 0.041 4.959 22 O -0.160 6.160 23 O -0.243 6.243 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.282 0.718 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.405 0.595 31 H 0.171 0.829 32 H 0.188 0.812 33 H 0.180 0.820 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 -22.564 -1.456 27.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.195 5.195 3 C -0.470 4.470 4 H 0.056 0.944 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.786 3.214 8 H -0.152 1.152 9 H -0.221 1.221 10 H -0.179 1.179 11 C 0.231 3.769 12 O -0.499 6.499 13 C -0.013 4.013 14 N -0.359 5.359 15 C 0.151 3.849 16 C -0.225 4.225 17 C -0.021 4.021 18 C -0.183 4.183 19 C -0.045 4.045 20 C -0.242 4.242 21 N 0.549 4.451 22 O -0.382 6.382 23 O -0.438 6.438 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.125 0.875 27 H 0.091 0.909 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.246 0.754 31 H 0.188 0.812 32 H 0.205 0.795 33 H 0.197 0.803 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.004 -22.119 -1.428 27.339 hybrid contribution 1.682 1.119 -0.268 2.038 sum -14.322 -21.000 -1.696 25.476 Atomic orbital electron populations 1.22455 0.79193 1.03597 1.04253 1.43708 1.06519 1.03984 1.65288 1.18655 1.11250 0.88594 1.28489 0.94418 1.26347 1.00179 0.93724 0.99178 1.69850 1.45720 0.99889 1.39623 0.85658 0.79343 0.78960 0.77460 1.15197 1.22131 1.17862 1.21187 0.88124 0.86640 0.80950 1.90590 1.16699 1.87417 1.55186 1.21375 0.91388 0.82354 1.06159 1.45368 1.11066 1.02415 1.77094 1.18000 0.93946 0.82273 0.90682 1.21238 0.90156 1.00867 1.10199 1.21892 1.02760 0.90067 0.87368 1.21431 0.89702 1.02378 1.04812 1.21056 0.98935 0.91773 0.92726 1.20920 0.76516 0.97560 1.29237 1.44057 1.04954 0.99030 0.97089 1.94426 1.53900 1.44657 1.45234 1.94567 1.84244 1.21332 1.43609 0.89696 0.92171 0.87545 0.90855 0.85683 0.85652 0.75396 0.81201 0.79498 0.80279 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.45 8.69 127.77 1.11 2.56 16 2 N -0.47 -21.71 2.56 -658.89 -1.69 -23.40 16 3 C -0.34 -19.98 9.36 84.04 0.79 -19.20 16 4 H 0.04 2.64 7.95 -2.91 -0.02 2.62 16 5 C 0.01 0.43 5.33 84.93 0.45 0.89 16 6 N -0.91 -54.25 13.96 21.66 0.30 -53.95 16 7 Si 0.96 39.73 24.93 68.60 1.71 41.44 16 8 H -0.23 -7.76 6.62 99.48 0.66 -7.10 16 9 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 11 C 0.44 19.90 7.70 87.66 0.67 20.58 16 12 O -0.61 -35.16 15.56 -3.07 -0.05 -35.21 16 13 C 0.11 3.30 4.03 85.63 0.35 3.65 16 14 N -0.73 -24.12 5.51 -343.13 -1.89 -26.01 16 15 C 0.26 6.72 6.61 38.21 0.25 6.97 16 16 C -0.20 -2.96 9.32 22.40 0.21 -2.75 16 17 C 0.00 -0.02 10.04 22.25 0.22 0.21 16 18 C -0.16 -1.55 10.04 22.29 0.22 -1.32 16 19 C -0.03 -0.46 9.64 22.25 0.21 -0.24 16 20 C -0.15 -4.18 6.54 36.51 0.24 -3.94 16 21 N 0.04 1.47 4.33 -46.16 -0.20 1.27 16 22 O -0.16 -5.64 18.90 18.90 0.36 -5.29 16 23 O -0.24 -10.31 16.60 18.88 0.31 -10.00 16 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.06 2.03 3.43 -2.38 -0.01 2.02 16 26 H 0.11 2.21 6.67 -2.39 -0.02 2.19 16 27 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.13 2.64 7.07 -2.39 -0.02 2.62 16 29 H 0.13 2.70 8.05 -2.39 -0.02 2.68 16 30 H 0.41 16.98 4.89 -92.71 -0.45 16.53 16 31 H 0.17 1.56 6.74 -2.91 -0.02 1.54 16 32 H 0.19 -0.17 8.06 -2.91 -0.02 -0.20 16 33 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 34 H 0.15 2.34 7.98 -2.92 -0.02 2.31 16 Total: -1.00 -86.78 295.83 4.25 -82.53 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.66 Total: 21.21 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 4.73 Total: 7.39 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -3.47 Total: -102.08 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: 0.62 Total: -50.49 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.71 Total: 41.44 kcal Total: -86.78 4.25 -82.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072072177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.636 kcal (2) G-P(sol) polarization free energy of solvation -86.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds