Wall clock time and date at job start Tue Mar 31 2020 00:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46910 * 110.99702 * 2 1 4 4 C 1.50706 * 109.46960 * 293.95134 * 3 2 1 5 5 O 1.21294 * 119.99683 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99901 * 179.97438 * 4 3 2 7 7 C 1.37087 * 119.99954 * 179.97438 * 6 4 3 8 8 H 1.08004 * 120.00150 * 0.02562 * 7 6 4 9 9 C 1.38948 * 120.00148 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99957 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00138 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46970 * 90.00581 * 11 9 7 13 13 H 1.48504 * 109.46972 * 210.00221 * 11 9 7 14 14 H 1.48495 * 109.47295 * 330.00379 * 11 9 7 15 15 C 1.39676 * 111.00267 * 123.94911 * 2 1 3 16 16 C 1.38930 * 120.07263 * 296.03023 * 15 2 1 17 17 C 1.38089 * 119.92063 * 180.02562 * 16 15 2 18 18 C 1.38306 * 120.07673 * 359.72243 * 17 16 15 19 19 C 1.38265 * 120.14784 * 0.55309 * 18 17 16 20 20 C 1.38133 * 120.07407 * 359.44555 * 19 18 17 21 21 N 1.48004 * 120.03704 * 180.29695 * 20 19 18 22 22 O 1.21803 * 119.99981 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99889 * 180.02562 * 21 20 19 24 24 H 1.08999 * 109.47578 * 296.04333 * 1 2 3 25 25 H 1.08997 * 109.47340 * 56.05047 * 1 2 3 26 26 H 1.09006 * 109.46874 * 176.04798 * 1 2 3 27 27 H 1.08997 * 109.46828 * 53.95164 * 3 2 1 28 28 H 1.08996 * 109.46943 * 173.95396 * 3 2 1 29 29 H 0.97002 * 119.99666 * 0.02562 * 6 4 3 30 30 H 0.96997 * 120.00499 * 179.97438 * 10 9 7 31 31 H 1.07998 * 120.04182 * 359.97438 * 16 15 2 32 32 H 1.07994 * 119.96009 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.92834 * 180.28197 * 18 17 16 34 34 H 1.08002 * 119.96572 * 179.72711 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 8 1.0046 1.4455 -2.1408 6 7 2.0179 3.3203 -1.5234 7 6 1.6922 3.9347 -2.7048 8 1 1.1299 3.3987 -3.4552 9 6 2.0845 5.2474 -2.9365 10 7 2.7682 5.8997 -2.0233 11 14 1.6401 6.0849 -4.5460 12 1 0.3273 6.7643 -4.4045 13 1 2.6818 7.0869 -4.8867 14 1 1.5579 5.0693 -5.6263 15 6 1.9696 -0.7282 1.0817 16 6 1.7265 -0.3006 2.3810 17 6 2.2234 -1.0226 3.4481 18 6 2.9574 -2.1734 3.2246 19 6 3.2059 -2.5986 1.9327 20 6 2.7118 -1.8811 0.8607 21 7 2.9728 -2.3407 -0.5218 22 8 3.6231 -3.3523 -0.7148 23 8 2.5372 -1.7072 -1.4665 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0708 27 1 1.5610 1.9274 0.8309 28 1 3.0796 1.3445 0.1082 29 1 2.5232 3.8015 -0.8496 30 1 3.0424 6.8159 -2.1850 31 1 1.1504 0.5959 2.5563 32 1 2.0352 -0.6906 4.4583 33 1 3.3410 -2.7388 4.0611 34 1 3.7831 -3.4952 1.7615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072302832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:38 Heat of formation + Delta-G solvation = 15.922556 kcal Electronic energy + Delta-G solvation = -21600.306855 eV Core-core repulsion = 18116.694051 eV Total energy + Delta-G solvation = -3483.612804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83267 -40.07005 -38.32683 -36.46818 -35.81396 -33.86157 -32.07091 -31.25964 -30.39555 -28.06759 -26.38532 -25.30204 -24.27280 -22.49288 -21.52870 -19.23029 -19.03848 -18.14294 -17.87865 -17.08374 -17.02952 -16.00276 -15.66545 -15.13149 -14.97813 -14.60801 -14.40479 -13.98090 -13.69843 -13.18961 -12.89040 -12.70047 -12.28176 -11.98702 -11.50999 -11.46300 -11.41654 -11.09437 -10.98711 -10.73589 -10.60563 -10.37452 -10.21104 -9.76167 -9.47840 -9.33451 -8.63001 -8.09872 -7.94476 -6.41313 -3.81821 -0.04249 0.67724 1.53992 1.72451 3.08434 3.19028 3.28119 3.34296 3.53593 3.87655 4.19552 4.27038 4.42449 4.62668 4.71109 4.81353 4.97194 5.19546 5.22773 5.43816 5.46055 5.59145 5.63283 5.72617 5.80698 5.84090 6.09157 6.21432 6.39755 6.70670 6.89178 7.22810 7.56542 8.05853 8.08456 8.61297 9.18620 9.53138 10.04813 10.76525 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.004326 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.379464 B = 6470.728535 C = 6950.709499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.479 5.479 3 C 0.052 3.948 4 C 0.446 3.554 5 O -0.564 6.564 6 N -0.564 5.564 7 C -0.296 4.296 8 H 0.105 0.895 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 0.930 3.070 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.268 1.268 15 C 0.166 3.834 16 C -0.155 4.155 17 C -0.062 4.062 18 C -0.129 4.129 19 C -0.056 4.056 20 C -0.028 4.028 21 N 0.020 4.980 22 O -0.213 6.213 23 O -0.071 6.071 24 H 0.022 0.978 25 H 0.111 0.889 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.391 0.609 30 H 0.271 0.729 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 -11.597 14.879 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.200 5.200 3 C -0.078 4.078 4 C 0.231 3.769 5 O -0.447 6.447 6 N -0.201 5.201 7 C -0.426 4.426 8 H 0.123 0.877 9 C -0.179 4.179 10 N -0.545 5.545 11 Si 0.757 3.243 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.193 1.193 15 C 0.070 3.930 16 C -0.176 4.176 17 C -0.081 4.081 18 C -0.147 4.147 19 C -0.075 4.075 20 C -0.112 4.112 21 N 0.543 4.457 22 O -0.412 6.412 23 O -0.307 6.307 24 H 0.041 0.959 25 H 0.129 0.871 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.224 0.776 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.625 -11.933 14.556 18.832 hybrid contribution 0.067 1.092 0.172 1.107 sum -0.558 -10.841 14.728 18.296 Atomic orbital electron populations 1.22617 0.83724 1.02755 1.02404 1.59351 1.09918 1.13969 1.36763 1.21962 1.00682 0.86737 0.98382 1.19443 0.85925 0.82982 0.88560 1.90529 1.43420 1.64242 1.46514 1.41821 1.49525 1.10581 1.18130 1.19714 1.32893 0.95353 0.94629 0.87735 1.25253 0.96781 0.96645 0.99233 1.69608 1.38157 1.12215 1.34511 0.85853 0.77946 0.78912 0.81581 1.20467 1.20969 1.19283 1.18850 0.92094 0.91308 0.90749 1.21922 1.02015 1.01882 0.91760 1.21471 0.93576 0.93395 0.99681 1.21174 1.00116 0.97493 0.95939 1.21039 0.96386 0.99194 0.90877 1.21272 1.07759 0.99357 0.82823 1.43456 0.99212 0.99988 1.03087 1.94480 1.39883 1.15507 1.91357 1.94775 1.49283 1.53759 1.32865 0.95905 0.87056 0.91962 0.92734 0.89454 0.77588 0.91905 0.83849 0.84256 0.83834 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.02 60.06 0.54 1.02 16 2 N -0.48 -8.14 2.35 -180.32 -0.42 -8.56 16 3 C 0.05 0.91 5.03 -4.97 -0.02 0.89 16 4 C 0.45 10.37 7.48 -10.98 -0.08 10.29 16 5 O -0.56 -14.99 13.91 5.55 0.08 -14.92 16 6 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 7 C -0.30 -8.18 9.68 -14.94 -0.14 -8.33 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 11 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 15 C 0.17 2.33 4.67 -83.79 -0.39 1.93 16 16 C -0.16 -1.59 8.66 -39.38 -0.34 -1.93 16 17 C -0.06 -0.47 10.04 -39.61 -0.40 -0.87 16 18 C -0.13 -0.96 10.04 -39.55 -0.40 -1.36 16 19 C -0.06 -0.58 9.55 -39.61 -0.38 -0.96 16 20 C -0.03 -0.40 6.87 -79.75 -0.55 -0.95 16 21 N 0.02 0.36 4.45 34.06 0.15 0.51 16 22 O -0.21 -3.77 18.45 -29.46 -0.54 -4.31 16 23 O -0.07 -1.48 17.10 -29.46 -0.50 -1.98 16 24 H 0.02 0.29 7.34 -51.93 -0.38 -0.09 16 25 H 0.11 2.11 5.82 -51.93 -0.30 1.80 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.81 7.47 -51.93 -0.39 0.43 16 28 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 29 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.14 1.29 7.14 -52.49 -0.37 0.91 16 32 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.15 1.38 7.61 -52.49 -0.40 0.98 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -32.79 303.07 -6.66 -39.45 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.37 Total: 6.84 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.26 Total: 0.25 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.39 Total: -45.89 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.97 Total: -21.21 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.79 -6.66 -39.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072302832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.368 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds