Wall clock time and date at job start Tue Mar 31 2020 00:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46910 * 110.99702 * 2 1 4 4 C 1.50706 * 109.46960 * 293.95134 * 3 2 1 5 5 O 1.21294 * 119.99683 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99901 * 179.97438 * 4 3 2 7 7 C 1.37087 * 119.99954 * 179.97438 * 6 4 3 8 8 H 1.08004 * 120.00150 * 0.02562 * 7 6 4 9 9 C 1.38948 * 120.00148 * 179.97438 * 7 6 4 10 10 N 1.31410 * 119.99957 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00138 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.46970 * 90.00581 * 11 9 7 13 13 H 1.48504 * 109.46972 * 210.00221 * 11 9 7 14 14 H 1.48495 * 109.47295 * 330.00379 * 11 9 7 15 15 C 1.39676 * 111.00267 * 123.94911 * 2 1 3 16 16 C 1.38930 * 120.07263 * 296.03023 * 15 2 1 17 17 C 1.38089 * 119.92063 * 180.02562 * 16 15 2 18 18 C 1.38306 * 120.07673 * 359.72243 * 17 16 15 19 19 C 1.38265 * 120.14784 * 0.55309 * 18 17 16 20 20 C 1.38133 * 120.07407 * 359.44555 * 19 18 17 21 21 N 1.48004 * 120.03704 * 180.29695 * 20 19 18 22 22 O 1.21803 * 119.99981 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99889 * 180.02562 * 21 20 19 24 24 H 1.08999 * 109.47578 * 296.04333 * 1 2 3 25 25 H 1.08997 * 109.47340 * 56.05047 * 1 2 3 26 26 H 1.09006 * 109.46874 * 176.04798 * 1 2 3 27 27 H 1.08997 * 109.46828 * 53.95164 * 3 2 1 28 28 H 1.08996 * 109.46943 * 173.95396 * 3 2 1 29 29 H 0.97002 * 119.99666 * 0.02562 * 6 4 3 30 30 H 0.96997 * 120.00499 * 179.97438 * 10 9 7 31 31 H 1.07998 * 120.04182 * 359.97438 * 16 15 2 32 32 H 1.07994 * 119.96009 * 179.97438 * 17 16 15 33 33 H 1.08001 * 119.92834 * 180.28197 * 18 17 16 34 34 H 1.08002 * 119.96572 * 179.72711 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 8 1.0046 1.4455 -2.1408 6 7 2.0179 3.3203 -1.5234 7 6 1.6922 3.9347 -2.7048 8 1 1.1299 3.3987 -3.4552 9 6 2.0845 5.2474 -2.9365 10 7 2.7682 5.8997 -2.0233 11 14 1.6401 6.0849 -4.5460 12 1 0.3273 6.7643 -4.4045 13 1 2.6818 7.0869 -4.8867 14 1 1.5579 5.0693 -5.6263 15 6 1.9696 -0.7282 1.0817 16 6 1.7265 -0.3006 2.3810 17 6 2.2234 -1.0226 3.4481 18 6 2.9574 -2.1734 3.2246 19 6 3.2059 -2.5986 1.9327 20 6 2.7118 -1.8811 0.8607 21 7 2.9728 -2.3407 -0.5218 22 8 3.6231 -3.3523 -0.7148 23 8 2.5372 -1.7072 -1.4665 24 1 -0.3634 0.4512 0.9233 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0253 -0.0708 27 1 1.5610 1.9274 0.8309 28 1 3.0796 1.3445 0.1082 29 1 2.5232 3.8015 -0.8496 30 1 3.0424 6.8159 -2.1850 31 1 1.1504 0.5959 2.5563 32 1 2.0352 -0.6906 4.4583 33 1 3.3410 -2.7388 4.0611 34 1 3.7831 -3.4952 1.7615 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072302832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:38 Heat of formation + Delta-G solvation = -6.123596 kcal Electronic energy + Delta-G solvation = -21601.262848 eV Core-core repulsion = 18116.694051 eV Total energy + Delta-G solvation = -3484.568797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.05359 -41.19392 -39.93414 -37.74293 -37.14369 -35.85416 -33.28761 -32.94283 -31.34607 -29.54826 -27.57003 -26.85326 -25.70696 -23.52567 -22.57139 -21.02988 -20.13164 -19.88007 -19.38182 -18.34941 -18.20945 -17.34209 -16.77941 -16.58716 -16.20569 -16.07297 -15.63801 -15.46846 -15.23383 -14.55017 -14.00495 -13.84117 -13.51689 -13.31720 -13.10158 -12.87107 -12.74466 -12.53232 -12.48785 -12.39816 -12.12151 -12.05078 -12.03214 -11.45770 -10.55972 -10.37133 -10.12740 -9.99166 -9.45002 -8.45910 -5.93939 -1.13461 -0.08423 0.42139 0.62349 1.38255 1.42329 1.55167 2.04155 2.23572 2.32930 2.46026 3.20248 3.23846 3.49059 3.77976 3.81140 3.99132 4.03047 4.15228 4.22176 4.36551 4.42665 4.47025 4.55405 4.86167 5.01967 5.07068 5.12908 5.32819 5.42298 5.51089 5.62665 5.99662 6.14894 6.61247 6.67648 7.14214 7.55751 8.12651 8.71671 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.004326 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.379464 B = 6470.728535 C = 6950.709499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.505 5.505 3 C 0.069 3.931 4 C 0.443 3.557 5 O -0.604 6.604 6 N -0.573 5.573 7 C -0.330 4.330 8 H 0.078 0.922 9 C -0.011 4.011 10 N -0.921 5.921 11 Si 0.991 3.009 12 H -0.269 1.269 13 H -0.271 1.271 14 H -0.276 1.276 15 C 0.141 3.859 16 C -0.154 4.154 17 C -0.037 4.037 18 C -0.106 4.106 19 C -0.056 4.056 20 C -0.057 4.057 21 N 0.028 4.972 22 O -0.194 6.194 23 O -0.168 6.168 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.396 0.604 30 H 0.277 0.723 31 H 0.159 0.841 32 H 0.187 0.813 33 H 0.190 0.810 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 -11.908 18.937 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.227 5.227 3 C -0.061 4.061 4 C 0.230 3.770 5 O -0.489 6.489 6 N -0.211 5.211 7 C -0.460 4.460 8 H 0.096 0.904 9 C -0.211 4.211 10 N -0.562 5.562 11 Si 0.815 3.185 12 H -0.194 1.194 13 H -0.196 1.196 14 H -0.201 1.201 15 C 0.045 3.955 16 C -0.174 4.174 17 C -0.055 4.055 18 C -0.125 4.125 19 C -0.076 4.076 20 C -0.142 4.142 21 N 0.541 4.459 22 O -0.404 6.404 23 O -0.382 6.382 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.230 0.770 30 H 0.087 0.913 31 H 0.177 0.823 32 H 0.204 0.796 33 H 0.208 0.792 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.163 -12.132 18.547 22.163 hybrid contribution -0.024 0.986 -0.818 1.281 sum -0.187 -11.146 17.729 20.943 Atomic orbital electron populations 1.22436 0.83774 1.02383 1.02115 1.59020 1.10245 1.13480 1.39957 1.21739 1.01214 0.87533 0.95575 1.20490 0.84120 0.82249 0.90130 1.90509 1.44753 1.65020 1.48578 1.41869 1.50184 1.11376 1.17701 1.19644 1.34386 0.96308 0.95613 0.90379 1.25989 0.96246 0.96565 1.02289 1.69662 1.38211 1.12628 1.35728 0.84952 0.78315 0.77751 0.77476 1.19404 1.19589 1.20053 1.18919 0.93726 0.91547 0.91324 1.22130 1.02085 1.02686 0.90518 1.22041 0.90687 0.91977 1.00836 1.21752 0.98079 0.97134 0.95485 1.21415 0.95955 0.99180 0.91010 1.21607 1.10586 1.01132 0.80848 1.44027 0.98015 0.99271 1.04605 1.94401 1.38539 1.15343 1.92157 1.94793 1.52970 1.55374 1.35101 0.92687 0.91127 0.91807 0.89294 0.88820 0.77048 0.91329 0.82328 0.79602 0.79236 0.81829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 9.02 127.69 1.15 2.40 16 2 N -0.51 -17.56 2.35 -724.42 -1.70 -19.26 16 3 C 0.07 2.44 5.03 85.56 0.43 2.88 16 4 C 0.44 21.63 7.48 87.66 0.66 22.29 16 5 O -0.60 -34.44 13.91 -3.07 -0.04 -34.48 16 6 N -0.57 -29.81 5.29 -306.98 -1.62 -31.44 16 7 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 10 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 11 Si 0.99 43.61 29.55 68.60 2.03 45.64 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 C 0.14 3.75 4.67 38.21 0.18 3.93 16 16 C -0.15 -2.51 8.66 22.40 0.19 -2.31 16 17 C -0.04 -0.31 10.04 22.25 0.22 -0.09 16 18 C -0.11 -0.93 10.04 22.29 0.22 -0.70 16 19 C -0.06 -0.98 9.55 22.25 0.21 -0.77 16 20 C -0.06 -1.59 6.87 36.51 0.25 -1.33 16 21 N 0.03 1.03 4.45 -46.16 -0.21 0.82 16 22 O -0.19 -6.98 18.45 18.88 0.35 -6.64 16 23 O -0.17 -7.62 17.10 18.89 0.32 -7.29 16 24 H 0.05 1.36 7.34 -2.39 -0.02 1.35 16 25 H 0.07 2.87 5.82 -2.39 -0.01 2.85 16 26 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.09 2.51 7.47 -2.39 -0.02 2.49 16 28 H 0.09 3.20 8.06 -2.39 -0.02 3.18 16 29 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 30 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.16 2.09 7.14 -2.91 -0.02 2.07 16 32 H 0.19 0.02 8.06 -2.91 -0.02 -0.01 16 33 H 0.19 0.05 8.06 -2.91 -0.02 0.02 16 34 H 0.16 2.42 7.61 -2.91 -0.02 2.40 16 Total: -1.00 -78.81 303.07 4.63 -74.18 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.42 Total: 20.16 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 4.80 Total: 7.94 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -3.25 Total: -99.51 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: 0.63 Total: -48.41 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -78.81 4.63 -74.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072302832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.053 kcal (2) G-P(sol) polarization free energy of solvation -78.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds