Wall clock time and date at job start Tue Mar 31 2020 00:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00063 * 2 1 4 4 C 1.50702 * 109.47591 * 270.00472 * 3 2 1 5 5 H 1.08005 * 119.99615 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00352 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00387 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00018 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.47397 * 89.99690 * 8 6 4 10 10 H 1.48498 * 109.47175 * 210.00295 * 8 6 4 11 11 H 1.48498 * 109.46958 * 329.99769 * 8 6 4 12 12 C 1.34781 * 119.99952 * 180.02562 * 2 1 3 13 13 O 1.21601 * 119.99901 * 175.68156 * 12 2 1 14 14 C 1.47434 * 119.99729 * 355.68024 * 12 2 1 15 15 C 1.39737 * 120.20623 * 48.60872 * 14 12 2 16 16 C 1.37746 * 119.92090 * 179.97438 * 15 14 12 17 17 C 1.38604 * 120.35893 * 359.97438 * 16 15 14 18 18 C 1.37959 * 120.42243 * 359.97438 * 17 16 15 19 19 N 1.48017 * 119.97097 * 180.02562 * 18 17 16 20 20 O 1.21801 * 120.00096 * 356.02253 * 19 18 17 21 21 O 1.21797 * 120.00018 * 176.02589 * 19 18 17 22 22 C 1.38956 * 120.05935 * 359.78258 * 18 17 16 23 23 N 1.38874 * 120.17484 * 180.22896 * 22 18 17 24 24 H 1.09001 * 109.47656 * 95.03269 * 1 2 3 25 25 H 1.09002 * 109.47261 * 215.03731 * 1 2 3 26 26 H 1.09004 * 109.46824 * 335.02983 * 1 2 3 27 27 H 1.09001 * 109.47300 * 30.00281 * 3 2 1 28 28 H 1.09004 * 109.47174 * 150.00081 * 3 2 1 29 29 H 0.96991 * 120.00117 * 179.97438 * 7 6 4 30 30 H 1.07991 * 120.03883 * 359.95370 * 15 14 12 31 31 H 1.08009 * 119.81967 * 179.97438 * 16 15 14 32 32 H 1.08001 * 119.79516 * 180.02562 * 17 16 15 33 33 H 0.96998 * 120.00372 * 209.49611 * 23 22 18 34 34 H 0.97008 * 120.00092 * 29.50755 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3464 3.2570 -2.9126 8 14 3.7351 3.9279 -0.2529 9 1 5.1084 3.5056 0.1225 10 1 3.7509 5.3548 -0.6640 11 1 2.8294 3.7585 0.9117 12 6 2.1389 -1.1672 -0.0005 13 8 3.3523 -1.1687 -0.0798 14 6 1.4048 -2.4422 0.0951 15 6 0.3051 -2.6841 -0.7325 16 6 -0.3762 -3.8776 -0.6386 17 6 0.0232 -4.8423 0.2730 18 6 1.1074 -4.6192 1.0963 19 7 1.5256 -5.6566 2.0658 20 8 0.8701 -6.6760 2.1876 21 8 2.5251 -5.4909 2.7418 22 6 1.8104 -3.4235 1.0128 23 7 2.9051 -3.1983 1.8372 24 1 -0.3634 -0.0901 -1.0237 25 1 -0.3634 -0.8414 0.5900 26 1 -0.3633 0.9317 0.4338 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5138 29 1 3.8232 4.0829 -3.0898 30 1 -0.0104 -1.9361 -1.4446 31 1 -1.2262 -4.0627 -1.2788 32 1 -0.5173 -5.7751 0.3386 33 1 3.1312 -2.2945 2.1072 34 1 3.4438 -3.9449 2.1429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122787996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:59 Heat of formation + Delta-G solvation = 3.532003 kcal Electronic energy + Delta-G solvation = -21607.510329 eV Core-core repulsion = 18123.360230 eV Total energy + Delta-G solvation = -3484.150099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.28039 -40.36585 -38.30849 -36.79654 -35.46212 -34.57998 -32.84360 -31.98073 -29.71270 -28.45338 -26.55771 -26.10023 -24.12219 -22.63207 -22.05352 -19.89385 -18.75608 -18.34245 -17.64199 -17.47840 -17.21490 -17.01144 -16.37071 -15.77616 -14.99224 -14.87080 -14.61102 -13.90089 -13.45349 -13.29289 -13.07005 -12.49839 -12.40541 -12.24879 -12.09077 -11.68385 -11.60462 -11.28343 -11.20902 -11.03915 -10.80554 -10.66014 -10.26348 -9.73880 -9.66029 -9.33761 -8.69142 -8.20839 -7.93605 -6.18654 -4.18687 -0.16521 0.80417 1.27739 1.37352 2.84249 3.20675 3.26146 3.28164 3.35585 3.44315 3.55894 4.24901 4.29826 4.48216 4.70201 4.74643 4.87705 5.11538 5.21485 5.38243 5.43316 5.66685 5.72906 5.90385 5.94432 6.05729 6.40195 6.50841 6.73601 6.99241 7.09925 7.46455 7.47289 7.65569 7.95008 8.32720 8.64102 8.83735 9.40321 10.94598 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.004443 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.116874 B = 6300.072761 C = 6798.908415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.587 5.587 3 C 0.216 3.784 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.553 3.447 13 O -0.523 6.523 14 C -0.190 4.190 15 C 0.004 3.996 16 C -0.175 4.175 17 C -0.004 4.004 18 C -0.128 4.128 19 N 0.053 4.947 20 O -0.172 6.172 21 O -0.193 6.193 22 C 0.320 3.680 23 N -0.834 5.834 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.411 0.589 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -12.634 7.619 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.318 5.318 3 C 0.096 3.904 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.191 1.191 12 C 0.338 3.662 13 O -0.400 6.400 14 C -0.199 4.199 15 C -0.016 4.016 16 C -0.196 4.196 17 C -0.024 4.024 18 C -0.219 4.219 19 N 0.563 4.437 20 O -0.386 6.386 21 O -0.397 6.397 22 C 0.204 3.796 23 N -0.379 5.379 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.168 0.832 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.242 0.758 34 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -9.144 -11.995 7.096 16.669 hybrid contribution 0.683 0.481 0.868 1.205 sum -8.461 -11.515 7.964 16.359 Atomic orbital electron populations 1.21867 0.80748 1.02458 1.01392 1.47803 1.06468 1.06797 1.70684 1.19767 0.92383 0.79484 0.98742 1.21264 1.37424 1.07318 0.91040 0.90700 1.24851 0.95128 0.97314 0.95606 1.69883 1.41149 1.23555 1.18680 0.86855 0.80128 0.79912 0.82797 1.19854 1.20942 1.19102 1.17707 0.87133 0.82762 0.78568 1.90823 1.13158 1.86708 1.49274 1.19893 1.01706 0.97717 1.00587 1.21791 0.89453 0.96492 0.93876 1.20899 1.03435 0.93522 1.01738 1.20940 0.91097 1.00024 0.90311 1.20623 1.05058 0.92343 1.03845 1.43351 0.99348 1.01084 0.99875 1.94507 1.53846 1.17098 1.73119 1.94314 1.16402 1.84394 1.44600 1.17184 0.85662 0.89647 0.87090 1.43073 1.28882 1.14155 1.51816 0.92472 0.92232 0.90741 0.94827 0.94527 0.92423 0.83188 0.83403 0.82987 0.75793 0.74379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 9.10 59.85 0.54 1.61 16 2 N -0.59 -10.99 2.86 -184.23 -0.53 -11.51 16 3 C 0.22 4.93 4.24 -5.20 -0.02 4.91 16 4 C -0.53 -14.58 9.94 -34.44 -0.34 -14.92 16 5 H 0.07 2.25 8.06 -52.48 -0.42 1.83 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 8 Si 0.88 20.69 27.47 -169.99 -4.67 16.02 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 12 C 0.55 10.40 6.58 -12.51 -0.08 10.31 16 13 O -0.52 -11.95 15.68 5.28 0.08 -11.86 16 14 C -0.19 -2.76 4.91 -104.80 -0.52 -3.27 16 15 C 0.00 0.04 7.77 -39.20 -0.30 -0.27 16 16 C -0.18 -1.51 10.02 -39.63 -0.40 -1.91 16 17 C 0.00 -0.04 9.54 -39.55 -0.38 -0.42 16 18 C -0.13 -1.63 6.86 -79.78 -0.55 -2.18 16 19 N 0.05 0.75 4.45 34.04 0.15 0.90 16 20 O -0.17 -2.43 18.44 -29.46 -0.54 -2.97 16 21 O -0.19 -2.80 15.87 -29.46 -0.47 -3.27 16 22 C 0.32 4.46 6.73 -83.61 -0.56 3.89 16 23 N -0.83 -11.34 7.87 32.55 0.26 -11.08 16 24 H 0.06 0.72 7.05 -51.93 -0.37 0.35 16 25 H 0.06 0.64 6.27 -51.93 -0.33 0.32 16 26 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 27 H 0.03 0.72 6.92 -51.93 -0.36 0.36 16 28 H 0.04 0.88 6.91 -51.93 -0.36 0.53 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.15 1.52 6.27 -52.49 -0.33 1.19 16 31 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.15 1.17 7.60 -52.49 -0.40 0.77 16 33 H 0.41 5.61 7.74 -40.82 -0.32 5.30 16 34 H 0.42 5.35 6.10 -40.82 -0.25 5.10 16 LS Contribution 295.62 15.07 4.45 4.45 Total: -1.00 -33.32 295.62 -6.31 -39.64 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.12 Total: 5.96 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.70 Total: -0.26 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.65 Total: -47.71 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.93 Total: -18.10 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.32 -6.31 -39.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122787996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.168 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds