Wall clock time and date at job start Tue Mar 31 2020 00:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00063 * 2 1 4 4 C 1.50702 * 109.47591 * 270.00472 * 3 2 1 5 5 H 1.08005 * 119.99615 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00352 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00387 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00018 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.47397 * 89.99690 * 8 6 4 10 10 H 1.48498 * 109.47175 * 210.00295 * 8 6 4 11 11 H 1.48498 * 109.46958 * 329.99769 * 8 6 4 12 12 C 1.34781 * 119.99952 * 180.02562 * 2 1 3 13 13 O 1.21601 * 119.99901 * 175.68156 * 12 2 1 14 14 C 1.47434 * 119.99729 * 355.68024 * 12 2 1 15 15 C 1.39737 * 120.20623 * 48.60872 * 14 12 2 16 16 C 1.37746 * 119.92090 * 179.97438 * 15 14 12 17 17 C 1.38604 * 120.35893 * 359.97438 * 16 15 14 18 18 C 1.37959 * 120.42243 * 359.97438 * 17 16 15 19 19 N 1.48017 * 119.97097 * 180.02562 * 18 17 16 20 20 O 1.21801 * 120.00096 * 356.02253 * 19 18 17 21 21 O 1.21797 * 120.00018 * 176.02589 * 19 18 17 22 22 C 1.38956 * 120.05935 * 359.78258 * 18 17 16 23 23 N 1.38874 * 120.17484 * 180.22896 * 22 18 17 24 24 H 1.09001 * 109.47656 * 95.03269 * 1 2 3 25 25 H 1.09002 * 109.47261 * 215.03731 * 1 2 3 26 26 H 1.09004 * 109.46824 * 335.02983 * 1 2 3 27 27 H 1.09001 * 109.47300 * 30.00281 * 3 2 1 28 28 H 1.09004 * 109.47174 * 150.00081 * 3 2 1 29 29 H 0.96991 * 120.00117 * 179.97438 * 7 6 4 30 30 H 1.07991 * 120.03883 * 359.95370 * 15 14 12 31 31 H 1.08009 * 119.81967 * 179.97438 * 16 15 14 32 32 H 1.08001 * 119.79516 * 180.02562 * 17 16 15 33 33 H 0.96998 * 120.00372 * 209.49611 * 23 22 18 34 34 H 0.97008 * 120.00092 * 29.50755 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.3464 3.2570 -2.9126 8 14 3.7351 3.9279 -0.2529 9 1 5.1084 3.5056 0.1225 10 1 3.7509 5.3548 -0.6640 11 1 2.8294 3.7585 0.9117 12 6 2.1389 -1.1672 -0.0005 13 8 3.3523 -1.1687 -0.0798 14 6 1.4048 -2.4422 0.0951 15 6 0.3051 -2.6841 -0.7325 16 6 -0.3762 -3.8776 -0.6386 17 6 0.0232 -4.8423 0.2730 18 6 1.1074 -4.6192 1.0963 19 7 1.5256 -5.6566 2.0658 20 8 0.8701 -6.6760 2.1876 21 8 2.5251 -5.4909 2.7418 22 6 1.8104 -3.4235 1.0128 23 7 2.9051 -3.1983 1.8372 24 1 -0.3634 -0.0901 -1.0237 25 1 -0.3634 -0.8414 0.5900 26 1 -0.3633 0.9317 0.4338 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1383 0.5138 29 1 3.8232 4.0829 -3.0898 30 1 -0.0104 -1.9361 -1.4446 31 1 -1.2262 -4.0627 -1.2788 32 1 -0.5173 -5.7751 0.3386 33 1 3.1312 -2.2945 2.1072 34 1 3.4438 -3.9449 2.1429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122787996.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:58 Heat of formation + Delta-G solvation = -20.066201 kcal Electronic energy + Delta-G solvation = -21608.533624 eV Core-core repulsion = 18123.360230 eV Total energy + Delta-G solvation = -3485.173394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.31261 -41.54702 -39.55543 -37.84599 -36.87499 -35.69473 -34.76376 -33.17689 -30.89240 -30.00753 -27.72964 -27.21498 -25.56866 -23.79062 -23.36197 -21.08476 -19.81321 -19.58525 -19.17037 -18.67778 -18.37764 -18.21714 -17.67368 -17.25055 -16.43909 -15.98917 -15.74773 -15.33866 -14.95435 -14.40322 -14.35790 -14.11893 -13.71119 -13.37180 -13.27985 -13.21718 -12.76294 -12.66969 -12.47351 -12.33567 -12.21469 -12.03991 -11.77221 -11.73034 -10.97373 -10.84129 -10.56026 -9.52249 -9.15631 -8.34511 -6.39821 -1.15631 -0.16776 0.32082 0.38014 1.32974 1.36824 1.44483 1.62734 2.12165 2.30157 2.34566 2.48713 3.00110 3.21241 3.59764 3.72185 3.92186 3.95954 4.25571 4.35427 4.58572 4.62994 4.74840 4.86530 4.89667 4.96639 5.07860 5.19712 5.42228 5.48174 5.52803 5.98080 6.20441 6.41073 6.53276 6.59352 6.61920 7.14402 7.28084 8.82284 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.004443 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.116874 B = 6300.072761 C = 6798.908415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.593 5.593 3 C 0.223 3.777 4 C -0.535 4.535 5 H 0.031 0.969 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.235 1.235 12 C 0.550 3.450 13 O -0.578 6.578 14 C -0.213 4.213 15 C 0.012 3.988 16 C -0.150 4.150 17 C 0.011 3.989 18 C -0.138 4.138 19 N 0.053 4.947 20 O -0.166 6.166 21 O -0.222 6.222 22 C 0.309 3.691 23 N -0.839 5.839 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.021 0.979 29 H 0.268 0.732 30 H 0.161 0.839 31 H 0.196 0.804 32 H 0.182 0.818 33 H 0.407 0.593 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 -13.522 8.480 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.323 5.323 3 C 0.101 3.899 4 C -0.574 4.574 5 H 0.050 0.950 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.203 1.203 11 H -0.158 1.158 12 C 0.338 3.662 13 O -0.459 6.459 14 C -0.221 4.221 15 C -0.007 4.007 16 C -0.170 4.170 17 C -0.009 4.009 18 C -0.229 4.229 19 N 0.560 4.440 20 O -0.383 6.383 21 O -0.419 6.419 22 C 0.193 3.807 23 N -0.384 5.384 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.179 0.821 31 H 0.213 0.787 32 H 0.199 0.801 33 H 0.237 0.763 34 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -11.876 -12.897 7.992 19.268 hybrid contribution 1.403 0.635 0.477 1.612 sum -10.474 -12.262 8.469 18.215 Atomic orbital electron populations 1.22184 0.77478 1.04514 1.02829 1.47851 1.08549 1.05526 1.70398 1.19458 0.92856 0.81990 0.95597 1.21525 1.36811 1.06676 0.92367 0.95034 1.25822 0.95321 0.98983 0.98468 1.70040 1.42676 1.24483 1.21308 0.85749 0.79561 0.77798 0.80039 1.20397 1.20253 1.15790 1.18345 0.86753 0.84099 0.77012 1.90779 1.15720 1.87700 1.51668 1.19511 1.03572 0.95980 1.03070 1.22032 0.88147 0.97860 0.92683 1.21357 1.03446 0.91374 1.00818 1.21439 0.89463 1.01239 0.88719 1.20826 1.06063 0.91623 1.04375 1.43549 0.99185 1.01281 0.99996 1.94480 1.53524 1.17346 1.72923 1.94324 1.17145 1.84799 1.45676 1.17307 0.85892 0.90226 0.87302 1.43086 1.29290 1.13910 1.52134 0.91480 0.88983 0.89737 0.92541 0.96091 0.92295 0.82106 0.78713 0.80078 0.76286 0.74308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.77 9.10 127.77 1.16 2.93 16 2 N -0.59 -21.95 2.86 -855.03 -2.44 -24.39 16 3 C 0.22 10.12 4.24 85.63 0.36 10.49 16 4 C -0.54 -30.06 9.94 25.60 0.25 -29.81 16 5 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 6 C 0.01 0.70 5.47 84.65 0.46 1.16 16 7 N -0.95 -58.31 13.96 21.45 0.30 -58.01 16 8 Si 0.95 42.74 27.47 68.60 1.88 44.62 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.23 -9.34 6.54 99.48 0.65 -8.69 16 12 C 0.55 20.88 6.58 86.67 0.57 21.45 16 13 O -0.58 -27.55 15.68 -4.03 -0.06 -27.61 16 14 C -0.21 -5.90 4.91 -19.98 -0.10 -6.00 16 15 C 0.01 0.23 7.77 22.52 0.18 0.41 16 16 C -0.15 -1.79 10.02 22.24 0.22 -1.57 16 17 C 0.01 0.16 9.54 22.29 0.21 0.38 16 18 C -0.14 -3.21 6.86 36.48 0.25 -2.96 16 19 N 0.05 1.41 4.45 -46.21 -0.21 1.20 16 20 O -0.17 -4.33 18.44 18.89 0.35 -3.99 16 21 O -0.22 -6.44 15.87 18.89 0.30 -6.14 16 22 C 0.31 8.34 6.73 38.71 0.26 8.60 16 23 N -0.84 -23.47 7.87 -50.95 -0.40 -23.87 16 24 H 0.07 1.53 7.05 -2.39 -0.02 1.51 16 25 H 0.09 1.67 6.27 -2.39 -0.01 1.66 16 26 H 0.08 1.92 7.84 -2.38 -0.02 1.90 16 27 H 0.06 2.31 6.92 -2.39 -0.02 2.29 16 28 H 0.02 1.02 6.91 -2.38 -0.02 1.01 16 29 H 0.27 15.41 8.31 -92.72 -0.77 14.64 16 30 H 0.16 2.71 6.27 -2.92 -0.02 2.69 16 31 H 0.20 0.64 8.06 -2.91 -0.02 0.62 16 32 H 0.18 1.77 7.60 -2.91 -0.02 1.75 16 33 H 0.41 11.72 7.74 -92.71 -0.72 11.00 16 34 H 0.42 11.20 6.10 -92.70 -0.57 10.63 16 Total: -1.00 -77.01 295.62 3.40 -73.62 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.16 Total: 19.49 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 3.84 Total: 5.06 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -2.75 Total: -105.06 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: 0.58 Total: -37.73 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.88 Total: 44.62 kcal Total: -77.01 3.40 -73.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122787996.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.550 kcal (2) G-P(sol) polarization free energy of solvation -77.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds