Wall clock time and date at job start Tue Mar 31 2020 00:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.38801 * 111.00042 * 2 1 4 4 C 1.40501 * 120.18773 * 90.81154 * 3 2 1 5 5 C 1.47257 * 120.21683 * 359.97438 * 4 3 2 6 6 O 1.21528 * 120.00407 * 321.65751 * 5 4 3 7 7 N 1.34772 * 119.99926 * 141.65306 * 5 4 3 8 8 C 1.46502 * 120.00014 * 6.57036 * 7 5 4 9 9 C 1.33303 * 120.00379 * 186.57157 * 7 5 4 10 10 H 1.07994 * 119.99735 * 40.34708 * 9 7 5 11 11 C 1.46788 * 120.00132 * 220.35205 * 9 7 5 12 12 N 1.29316 * 120.00185 * 26.93195 * 11 9 7 13 13 Si 1.86796 * 120.00157 * 206.93793 * 11 9 7 14 14 H 1.48497 * 109.47603 * 89.99293 * 13 11 9 15 15 H 1.48498 * 109.47381 * 209.99999 * 13 11 9 16 16 H 1.48506 * 109.46962 * 329.99502 * 13 11 9 17 17 C 1.39806 * 119.56691 * 179.97438 * 4 3 2 18 18 C 1.37741 * 119.91457 * 0.02562 * 17 4 3 19 19 C 1.38613 * 120.36850 * 359.73987 * 18 17 4 20 20 C 1.37989 * 120.44238 * 0.52142 * 19 18 17 21 21 N 1.48020 * 119.95872 * 179.76175 * 20 19 18 22 22 O 1.31699 * 120.00322 * 354.68499 * 21 20 19 23 23 O 1.31699 * 119.99778 * 174.40845 * 21 20 19 24 24 H 1.09003 * 109.47205 * 305.11714 * 1 2 3 25 25 H 1.09000 * 109.47271 * 65.11182 * 1 2 3 26 26 H 1.08996 * 109.47038 * 185.11656 * 1 2 3 27 27 H 1.00906 * 110.99663 * 123.94470 * 2 1 3 28 28 H 1.08999 * 109.47710 * 96.22803 * 8 7 5 29 29 H 1.09007 * 109.47376 * 216.22800 * 8 7 5 30 30 H 1.09002 * 109.47115 * 336.22577 * 8 7 5 31 31 H 0.96999 * 120.00464 * 179.97438 * 12 11 9 32 32 H 1.07993 * 120.04083 * 179.97438 * 17 4 3 33 33 H 1.07998 * 119.81192 * 179.97438 * 18 17 4 34 34 H 1.07999 * 119.77523 * 180.25828 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9664 1.2958 0.0000 4 6 2.2356 1.9492 1.2143 5 6 1.9914 1.2640 2.4947 6 8 1.0185 0.5474 2.6245 7 7 2.8469 1.4314 3.5225 8 6 3.9377 2.4037 3.4167 9 6 2.7008 0.7122 4.6353 10 1 2.4341 -0.3324 4.5720 11 6 2.9022 1.3401 5.9467 12 7 2.7049 2.6098 6.0929 13 14 3.4436 0.3053 7.4046 14 1 4.9269 0.2763 7.4676 15 1 2.9063 0.8950 8.6571 16 1 2.9277 -1.0785 7.2481 17 6 2.7370 3.2542 1.1992 18 6 2.9626 3.8895 -0.0020 19 6 2.7004 3.2402 -1.1982 20 6 2.2004 1.9541 -1.2007 21 7 1.9193 1.2728 -2.4844 22 8 2.0465 1.9283 -3.6195 23 8 1.5473 0.0094 -2.4916 24 1 -0.3634 0.5912 0.8406 25 1 -0.3634 0.4325 -0.9322 26 1 -0.3633 -1.0235 0.0916 27 1 1.8305 -0.5260 0.7815 28 1 3.6344 3.3420 3.8812 29 1 4.8208 2.0158 3.9245 30 1 4.1695 2.5768 2.3658 31 1 2.8376 3.0247 6.9595 32 1 2.9462 3.7638 2.1281 33 1 3.3495 4.8977 -0.0117 34 1 2.8848 3.7459 -2.1345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170596215.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:22 Heat of formation + Delta-G solvation = 54.685546 kcal Electronic energy + Delta-G solvation = -22087.203992 eV Core-core repulsion = 18605.272077 eV Total energy + Delta-G solvation = -3481.931915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.105 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.65998 -38.69384 -37.44157 -36.09293 -34.64083 -33.83668 -32.61210 -31.51026 -29.99297 -27.04629 -26.01208 -25.52262 -24.70123 -22.88090 -21.49761 -19.89908 -18.12272 -17.62717 -17.32185 -17.04493 -15.97924 -15.82622 -15.42282 -15.18648 -14.99194 -14.44611 -14.21228 -13.98687 -13.29395 -13.08396 -12.75635 -12.33709 -12.22017 -11.93330 -11.89346 -11.49735 -11.34677 -11.08884 -10.94659 -10.79752 -10.68777 -10.56533 -10.26757 -9.39479 -9.37006 -9.18728 -8.69100 -8.23503 -7.95605 -6.80293 -4.11970 -0.35289 0.85591 1.31086 1.48028 2.89837 3.04756 3.07645 3.15026 3.83560 3.85549 4.03978 4.36580 4.58603 4.70295 4.83819 4.90967 5.10430 5.14326 5.45371 5.67405 5.73137 5.81195 5.94426 6.01446 6.07447 6.13135 6.26545 6.27915 6.43993 6.53828 7.01089 7.08508 7.15368 7.41952 7.89704 8.14307 8.81710 9.02461 9.76618 10.16878 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.030398 B = 0.005122 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.898911 B = 5465.133204 C = 6093.652876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.630 5.630 3 C 0.211 3.789 4 C -0.142 4.142 5 C 0.457 3.543 6 O -0.577 6.577 7 N -0.390 5.390 8 C 0.063 3.937 9 C -0.365 4.365 10 H 0.098 0.902 11 C 0.060 3.940 12 N -0.812 5.812 13 Si 0.921 3.079 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.261 1.261 17 C -0.039 4.039 18 C -0.141 4.141 19 C -0.046 4.046 20 C -0.016 4.016 21 N -0.010 5.010 22 O -0.229 6.229 23 O -0.120 6.120 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.371 0.629 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.280 0.720 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 4.168 -5.999 7.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.259 5.259 3 C 0.108 3.892 4 C -0.149 4.149 5 C 0.248 3.752 6 O -0.463 6.463 7 N -0.103 5.103 8 C -0.080 4.080 9 C -0.493 4.493 10 H 0.116 0.884 11 C -0.158 4.158 12 N -0.441 5.441 13 Si 0.746 3.254 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.185 1.185 17 C -0.059 4.059 18 C -0.160 4.160 19 C -0.067 4.067 20 C -0.105 4.105 21 N 0.467 4.533 22 O -0.407 6.407 23 O -0.327 6.327 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.195 0.805 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.774 4.256 -5.940 7.816 hybrid contribution 0.215 -0.095 1.273 1.295 sum 2.989 4.162 -4.667 6.931 Atomic orbital electron populations 1.22123 0.83466 1.03347 1.00756 1.57674 1.09990 1.07967 1.50232 1.18603 0.91690 0.89790 0.89122 1.21216 1.03378 0.95702 0.94640 1.17769 0.84437 0.88525 0.84495 1.90599 1.28770 1.43828 1.83149 1.42129 1.21280 1.33826 1.13089 1.22346 0.91359 0.95047 0.99263 1.20131 1.54043 0.93732 0.81431 0.88405 1.27123 0.94230 0.95112 0.99295 1.69018 1.35736 1.12857 1.26517 0.86032 0.79276 0.81034 0.79097 1.19701 1.20681 1.18482 1.22217 0.90534 0.93372 0.99730 1.21061 1.03385 1.01005 0.90533 1.21027 0.93835 0.91006 1.00798 1.20149 1.14523 0.95249 0.80569 1.50238 0.96894 1.02669 1.03453 1.96225 1.61073 1.66257 1.17099 1.96299 1.47096 0.93225 1.96031 0.92700 0.92814 0.90371 0.80493 0.91555 0.92158 0.92738 0.90797 0.82700 0.83508 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.83 9.47 60.06 0.57 1.40 16 2 N -0.63 -11.41 4.61 -64.90 -0.30 -11.71 16 3 C 0.21 3.75 5.25 -83.60 -0.44 3.31 16 4 C -0.14 -2.58 5.35 -104.79 -0.56 -3.14 16 5 C 0.46 10.21 6.67 -12.60 -0.08 10.12 16 6 O -0.58 -14.50 13.32 5.34 0.07 -14.43 16 7 N -0.39 -8.89 2.84 -121.92 -0.35 -9.24 16 8 C 0.06 1.17 7.82 59.85 0.47 1.64 16 9 C -0.36 -9.17 8.92 -13.46 -0.12 -9.29 16 10 H 0.10 2.60 7.97 -52.49 -0.42 2.18 16 11 C 0.06 1.42 5.17 -15.16 -0.08 1.34 16 12 N -0.81 -19.42 12.49 56.00 0.70 -18.72 16 13 Si 0.92 18.24 29.70 -169.99 -5.05 13.19 16 14 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 15 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 17 C -0.04 -0.56 7.37 -39.18 -0.29 -0.85 16 18 C -0.14 -1.63 10.02 -39.62 -0.40 -2.03 16 19 C -0.05 -0.61 9.57 -39.53 -0.38 -0.99 16 20 C -0.02 -0.26 6.89 -79.79 -0.55 -0.81 16 21 N -0.01 -0.18 4.98 34.04 0.17 -0.01 16 22 O -0.23 -4.17 19.15 -31.57 -0.60 -4.77 16 23 O -0.12 -2.29 16.75 -31.57 -0.53 -2.82 16 24 H 0.05 1.04 6.59 -51.93 -0.34 0.70 16 25 H 0.05 0.89 7.54 -51.93 -0.39 0.50 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.37 7.07 7.03 -39.29 -0.28 6.79 16 28 H 0.07 1.25 6.92 -51.93 -0.36 0.89 16 29 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 30 H 0.05 0.84 4.74 -51.93 -0.25 0.59 16 31 H 0.28 6.17 8.26 -40.82 -0.34 5.84 16 32 H 0.16 2.15 5.44 -52.49 -0.29 1.86 16 33 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.15 1.68 7.57 -52.49 -0.40 1.28 16 LS Contribution 294.00 15.07 4.43 4.43 Total: -1.00 -28.92 294.00 -6.43 -35.35 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -3.11 Total: 8.03 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.86 Total: 0.71 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.22 Total: -39.69 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -1.06 Total: -22.03 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.05 Total: 13.19 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.92 -6.43 -35.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170596215.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.035 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds